Coexpression cluster: Cluster_121 (Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003674 molecular_function 81.58% (93/114) 0.75 0.0 0.0
GO:0009987 cellular process 47.37% (54/114) 1.25 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 23.68% (27/114) 2.12 0.0 0.0
GO:0005575 cellular_component 32.46% (37/114) 1.65 0.0 0.0
GO:0043226 organelle 16.67% (19/114) 2.56 0.0 0.0
GO:0043229 intracellular organelle 16.67% (19/114) 2.56 0.0 0.0
GO:0008150 biological_process 61.4% (70/114) 0.9 0.0 0.0
GO:0044238 primary metabolic process 40.35% (46/114) 1.31 0.0 0.0
GO:0005198 structural molecule activity 11.4% (13/114) 3.21 0.0 0.0
GO:0043170 macromolecule metabolic process 33.33% (38/114) 1.45 0.0 0.0
GO:0097159 organic cyclic compound binding 41.23% (47/114) 1.21 0.0 0.0
GO:0005488 binding 57.89% (66/114) 0.88 0.0 0.0
GO:0140097 catalytic activity, acting on DNA 7.89% (9/114) 4.01 0.0 0.0
GO:0071704 organic substance metabolic process 40.35% (46/114) 1.19 0.0 0.0
GO:1903047 mitotic cell cycle process 4.39% (5/114) 6.02 0.0 0.0
GO:0035639 purine ribonucleoside triphosphate binding 23.68% (27/114) 1.73 0.0 1e-06
GO:0006807 nitrogen compound metabolic process 34.21% (39/114) 1.31 0.0 1e-06
GO:0008152 metabolic process 41.23% (47/114) 1.12 0.0 1e-06
GO:0051082 unfolded protein binding 5.26% (6/114) 4.88 0.0 1e-06
GO:0005524 ATP binding 21.93% (25/114) 1.75 0.0 2e-06
GO:0006259 DNA metabolic process 8.77% (10/114) 3.28 0.0 2e-06
GO:0003676 nucleic acid binding 23.68% (27/114) 1.62 0.0 2e-06
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 10.53% (12/114) 2.84 0.0 3e-06
GO:0016817 hydrolase activity, acting on acid anhydrides 10.53% (12/114) 2.83 0.0 3e-06
GO:0051276 chromosome organization 5.26% (6/114) 4.65 0.0 3e-06
GO:0007076 mitotic chromosome condensation 2.63% (3/114) 7.74 0.0 3e-06
GO:1901265 nucleoside phosphate binding 25.44% (29/114) 1.5 0.0 3e-06
GO:0000166 nucleotide binding 25.44% (29/114) 1.5 0.0 3e-06
GO:0017076 purine nucleotide binding 24.56% (28/114) 1.53 0.0 4e-06
GO:0140640 catalytic activity, acting on a nucleic acid 10.53% (12/114) 2.75 0.0 4e-06
GO:0032555 purine ribonucleotide binding 23.68% (27/114) 1.55 0.0 4e-06
GO:0032553 ribonucleotide binding 23.68% (27/114) 1.53 0.0 5e-06
GO:0006412 translation 8.77% (10/114) 3.06 0.0 5e-06
GO:0003735 structural constituent of ribosome 8.77% (10/114) 3.03 0.0 6e-06
GO:0043043 peptide biosynthetic process 8.77% (10/114) 3.03 0.0 6e-06
GO:0097367 carbohydrate derivative binding 23.68% (27/114) 1.52 0.0 6e-06
GO:0017111 ribonucleoside triphosphate phosphatase activity 9.65% (11/114) 2.83 0.0 6e-06
GO:1901363 heterocyclic compound binding 25.44% (29/114) 1.45 0.0 6e-06
GO:0030261 chromosome condensation 2.63% (3/114) 7.42 0.0 6e-06
GO:0016887 ATP hydrolysis activity 7.89% (9/114) 3.24 1e-06 6e-06
GO:0036094 small molecule binding 25.44% (29/114) 1.44 1e-06 6e-06
GO:0044237 cellular metabolic process 30.7% (35/114) 1.24 1e-06 6e-06
GO:0030554 adenyl nucleotide binding 22.81% (26/114) 1.54 1e-06 7e-06
GO:0006518 peptide metabolic process 8.77% (10/114) 2.96 1e-06 8e-06
GO:0090304 nucleic acid metabolic process 14.04% (16/114) 2.13 1e-06 8e-06
GO:0043604 amide biosynthetic process 8.77% (10/114) 2.94 1e-06 8e-06
GO:0016462 pyrophosphatase activity 9.65% (11/114) 2.75 1e-06 8e-06
GO:0032559 adenyl ribonucleotide binding 21.93% (25/114) 1.56 1e-06 8e-06
GO:0005515 protein binding 28.95% (33/114) 1.26 1e-06 1.1e-05
GO:0016787 hydrolase activity 21.05% (24/114) 1.57 1e-06 1.2e-05
GO:0043232 intracellular non-membrane-bounded organelle 8.77% (10/114) 2.81 2e-06 1.6e-05
GO:0043228 non-membrane-bounded organelle 8.77% (10/114) 2.81 2e-06 1.6e-05
GO:0043603 amide metabolic process 8.77% (10/114) 2.8 2e-06 1.7e-05
GO:0032991 protein-containing complex 14.04% (16/114) 2.0 3e-06 2.2e-05
GO:0043168 anion binding 23.68% (27/114) 1.39 3e-06 2.3e-05
GO:0006139 nucleobase-containing compound metabolic process 14.91% (17/114) 1.89 3e-06 2.6e-05
GO:0110165 cellular anatomical entity 21.05% (24/114) 1.48 4e-06 3e-05
GO:0006457 protein folding 5.26% (6/114) 3.84 4e-06 3.4e-05
GO:1901360 organic cyclic compound metabolic process 15.79% (18/114) 1.78 5e-06 3.8e-05
GO:0006260 DNA replication 4.39% (5/114) 4.3 6e-06 4.4e-05
GO:0006270 DNA replication initiation 2.63% (3/114) 6.28 7e-06 5.3e-05
GO:0005634 nucleus 7.89% (9/114) 2.74 9e-06 6.7e-05
GO:0046483 heterocycle metabolic process 14.91% (17/114) 1.75 1.1e-05 8.3e-05
GO:0022402 cell cycle process 4.39% (5/114) 4.05 1.4e-05 0.0001
GO:1901576 organic substance biosynthetic process 14.04% (16/114) 1.8 1.4e-05 0.000101
GO:0006725 cellular aromatic compound metabolic process 14.91% (17/114) 1.72 1.5e-05 0.000103
GO:0005840 ribosome 7.02% (8/114) 2.88 1.5e-05 0.000103
GO:0009059 macromolecule biosynthetic process 9.65% (11/114) 2.28 1.8e-05 0.000121
GO:0044249 cellular biosynthetic process 13.16% (15/114) 1.81 2.5e-05 0.000167
GO:0003887 DNA-directed DNA polymerase activity 2.63% (3/114) 5.57 3.3e-05 0.000219
GO:0009058 biosynthetic process 14.04% (16/114) 1.7 3.3e-05 0.000221
GO:0034061 DNA polymerase activity 2.63% (3/114) 5.49 3.9e-05 0.000256
GO:0140657 ATP-dependent activity 7.89% (9/114) 2.44 4.5e-05 0.000288
GO:0043227 membrane-bounded organelle 7.89% (9/114) 2.33 8.4e-05 0.000523
GO:0043231 intracellular membrane-bounded organelle 7.89% (9/114) 2.33 8.4e-05 0.000523
GO:0003678 DNA helicase activity 2.63% (3/114) 5.04 0.000104 0.000639
GO:0044271 cellular nitrogen compound biosynthetic process 9.65% (11/114) 1.98 0.000115 0.000702
GO:0016779 nucleotidyltransferase activity 4.39% (5/114) 3.4 0.000118 0.000711
GO:0008097 5S rRNA binding 1.75% (2/114) 6.83 0.000122 0.000722
GO:0030120 vesicle coat 2.63% (3/114) 4.88 0.000144 0.000847
GO:0043167 ion binding 27.19% (31/114) 0.96 0.000159 0.000919
GO:1901566 organonitrogen compound biosynthetic process 8.77% (10/114) 2.03 0.000178 0.001018
GO:0006996 organelle organization 5.26% (6/114) 2.85 0.000193 0.001089
GO:0042555 MCM complex 1.75% (2/114) 6.35 0.000254 0.001419
GO:0003723 RNA binding 8.77% (10/114) 1.96 0.000261 0.001438
GO:0019538 protein metabolic process 19.3% (22/114) 1.16 0.00027 0.001473
GO:0004520 DNA endonuclease activity 1.75% (2/114) 6.15 0.000338 0.001802
GO:0006508 proteolysis 7.89% (9/114) 2.06 0.000335 0.001806
GO:0008094 ATP-dependent activity, acting on DNA 3.51% (4/114) 3.55 0.00039 0.002054
GO:0032508 DNA duplex unwinding 1.75% (2/114) 5.98 0.000434 0.002235
GO:0032392 DNA geometric change 1.75% (2/114) 5.98 0.000434 0.002235
GO:0030117 membrane coat 2.63% (3/114) 4.28 0.000504 0.002569
GO:0003824 catalytic activity 37.72% (43/114) 0.66 0.00066 0.003291
GO:0004536 DNA nuclease activity 1.75% (2/114) 5.69 0.00066 0.003326
GO:0004386 helicase activity 3.51% (4/114) 3.31 0.000741 0.003657
GO:1901564 organonitrogen compound metabolic process 21.05% (24/114) 0.99 0.000766 0.00374
GO:0030126 COPI vesicle coat 1.75% (2/114) 5.57 0.00079 0.003818
GO:0008233 peptidase activity 7.02% (8/114) 2.03 0.000824 0.003945
GO:0003777 microtubule motor activity 2.63% (3/114) 3.98 0.00092 0.004315
GO:0007018 microtubule-based movement 2.63% (3/114) 3.98 0.00092 0.004315
GO:0005852 eukaryotic translation initiation factor 3 complex 1.75% (2/114) 5.15 0.001423 0.006606
GO:0003774 cytoskeletal motor activity 2.63% (3/114) 3.69 0.001646 0.00757
GO:0008234 cysteine-type peptidase activity 3.51% (4/114) 2.97 0.001747 0.007953
GO:0008610 lipid biosynthetic process 4.39% (5/114) 2.5 0.002007 0.00905
GO:0071103 DNA conformation change 1.75% (2/114) 4.69 0.002701 0.012064
GO:0051603 proteolysis involved in protein catabolic process 3.51% (4/114) 2.77 0.002913 0.01289
GO:0071216 cellular response to biotic stimulus 0.88% (1/114) 8.15 0.003514 0.013735
GO:0101031 protein folding chaperone complex 0.88% (1/114) 8.15 0.003514 0.013735
GO:0005832 chaperonin-containing T-complex 0.88% (1/114) 8.15 0.003514 0.013735
GO:0072396 response to cell cycle checkpoint signaling 0.88% (1/114) 8.15 0.003514 0.013735
GO:0072402 response to DNA integrity checkpoint signaling 0.88% (1/114) 8.15 0.003514 0.013735
GO:0072423 response to DNA damage checkpoint signaling 0.88% (1/114) 8.15 0.003514 0.013735
GO:0033567 DNA replication, Okazaki fragment processing 0.88% (1/114) 8.15 0.003514 0.013735
GO:1902315 nuclear cell cycle DNA replication initiation 0.88% (1/114) 8.15 0.003514 0.013735
GO:1902975 mitotic DNA replication initiation 0.88% (1/114) 8.15 0.003514 0.013735
GO:0071495 cellular response to endogenous stimulus 0.88% (1/114) 8.15 0.003514 0.013735
GO:0017116 single-stranded DNA helicase activity 0.88% (1/114) 8.15 0.003514 0.013735
GO:1902292 cell cycle DNA replication initiation 0.88% (1/114) 8.15 0.003514 0.013735
GO:0048532 anatomical structure arrangement 0.88% (1/114) 8.15 0.003514 0.013735
GO:0009933 meristem structural organization 0.88% (1/114) 8.15 0.003514 0.013735
GO:1990904 ribonucleoprotein complex 3.51% (4/114) 2.63 0.004116 0.015956
GO:0008092 cytoskeletal protein binding 3.51% (4/114) 2.61 0.004277 0.016442
GO:0016043 cellular component organization 6.14% (7/114) 1.78 0.004477 0.01707
GO:0008017 microtubule binding 2.63% (3/114) 3.11 0.00519 0.019629
GO:0006426 glycyl-tRNA aminoacylation 0.88% (1/114) 7.15 0.007016 0.021792
GO:1905462 regulation of DNA duplex unwinding 0.88% (1/114) 7.15 0.007016 0.021792
GO:0004820 glycine-tRNA ligase activity 0.88% (1/114) 7.15 0.007016 0.021792
GO:0032780 negative regulation of ATP-dependent activity 0.88% (1/114) 7.15 0.007016 0.021792
GO:0048256 flap endonuclease activity 0.88% (1/114) 7.15 0.007016 0.021792
GO:0000796 condensin complex 0.88% (1/114) 7.15 0.007016 0.021792
GO:0000082 G1/S transition of mitotic cell cycle 0.88% (1/114) 7.15 0.007016 0.021792
GO:0043462 regulation of ATP-dependent activity 0.88% (1/114) 7.15 0.007016 0.021792
GO:1905463 negative regulation of DNA duplex unwinding 0.88% (1/114) 7.15 0.007016 0.021792
GO:0051095 regulation of helicase activity 0.88% (1/114) 7.15 0.007016 0.021792
GO:0051097 negative regulation of helicase activity 0.88% (1/114) 7.15 0.007016 0.021792
GO:0017108 5'-flap endonuclease activity 0.88% (1/114) 7.15 0.007016 0.021792
GO:1905775 negative regulation of DNA helicase activity 0.88% (1/114) 7.15 0.007016 0.021792
GO:1905774 regulation of DNA helicase activity 0.88% (1/114) 7.15 0.007016 0.021792
GO:0016442 RISC complex 0.88% (1/114) 7.15 0.007016 0.021792
GO:0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters 0.88% (1/114) 7.15 0.007016 0.021792
GO:0031332 RNAi effector complex 0.88% (1/114) 7.15 0.007016 0.021792
GO:0044770 cell cycle phase transition 0.88% (1/114) 7.15 0.007016 0.021792
GO:0016885 ligase activity, forming carbon-carbon bonds 0.88% (1/114) 7.15 0.007016 0.021792
GO:0044772 mitotic cell cycle phase transition 0.88% (1/114) 7.15 0.007016 0.021792
GO:0044843 cell cycle G1/S phase transition 0.88% (1/114) 7.15 0.007016 0.021792
GO:0003989 acetyl-CoA carboxylase activity 0.88% (1/114) 7.15 0.007016 0.021792
GO:0016421 CoA carboxylase activity 0.88% (1/114) 7.15 0.007016 0.021792
GO:0006427 histidyl-tRNA aminoacylation 0.88% (1/114) 7.15 0.007016 0.021792
GO:0004821 histidine-tRNA ligase activity 0.88% (1/114) 7.15 0.007016 0.021792
GO:0006515 protein quality control for misfolded or incompletely synthesized proteins 0.88% (1/114) 7.15 0.007016 0.021792
GO:0019843 rRNA binding 1.75% (2/114) 3.98 0.007134 0.021868
GO:0015631 tubulin binding 2.63% (3/114) 2.94 0.00712 0.021968
GO:0044255 cellular lipid metabolic process 4.39% (5/114) 2.13 0.005984 0.022454
GO:0007017 microtubule-based process 2.63% (3/114) 2.87 0.008224 0.025046
GO:0071840 cellular component organization or biogenesis 6.14% (7/114) 1.61 0.008377 0.025346
GO:0006629 lipid metabolic process 5.26% (6/114) 1.77 0.008656 0.026024
GO:0003677 DNA binding 9.65% (11/114) 1.19 0.008819 0.026346
GO:0046907 intracellular transport 3.51% (4/114) 2.28 0.00963 0.028586
GO:0051649 establishment of localization in cell 3.51% (4/114) 2.26 0.009912 0.029237
GO:0000737 obsolete DNA catabolic process, endonucleolytic 0.88% (1/114) 6.57 0.010506 0.029683
GO:0005689 U12-type spliceosomal complex 0.88% (1/114) 6.57 0.010506 0.029683
GO:0009008 DNA-methyltransferase activity 0.88% (1/114) 6.57 0.010506 0.029683
GO:0090116 C-5 methylation of cytosine 0.88% (1/114) 6.57 0.010506 0.029683
GO:0003886 DNA (cytosine-5-)-methyltransferase activity 0.88% (1/114) 6.57 0.010506 0.029683
GO:0032776 DNA methylation on cytosine 0.88% (1/114) 6.57 0.010506 0.029683
GO:0004576 oligosaccharyl transferase activity 0.88% (1/114) 6.57 0.010506 0.029683
GO:0009057 macromolecule catabolic process 3.51% (4/114) 2.18 0.012194 0.034245
GO:0016579 protein deubiquitination 1.75% (2/114) 3.54 0.012928 0.03609
GO:0004843 cysteine-type deubiquitinase activity 1.75% (2/114) 3.51 0.013436 0.037286
GO:0032543 mitochondrial translation 0.88% (1/114) 6.15 0.013984 0.03791
GO:0016889 DNA endonuclease activity, producing 3'-phosphomonoesters 0.88% (1/114) 6.15 0.013984 0.03791
GO:0008821 crossover junction DNA endonuclease activity 0.88% (1/114) 6.15 0.013984 0.03791
GO:0070646 protein modification by small protein removal 1.75% (2/114) 3.48 0.013952 0.038492
GO:0004518 nuclease activity 2.63% (3/114) 2.56 0.014661 0.039518
GO:0006886 intracellular protein transport 2.63% (3/114) 2.53 0.01548 0.041486
GO:0006418 tRNA aminoacylation for protein translation 1.75% (2/114) 3.37 0.016103 0.041958
GO:0004812 aminoacyl-tRNA ligase activity 1.75% (2/114) 3.37 0.016103 0.041958
GO:0016875 ligase activity, forming carbon-oxygen bonds 1.75% (2/114) 3.37 0.016103 0.041958
GO:0043038 amino acid activation 1.75% (2/114) 3.37 0.016103 0.041958
GO:0043039 tRNA aminoacylation 1.75% (2/114) 3.37 0.016103 0.041958
GO:0043632 modification-dependent macromolecule catabolic process 2.63% (3/114) 2.49 0.016611 0.04257
GO:0019941 modification-dependent protein catabolic process 2.63% (3/114) 2.49 0.016611 0.04257
GO:0006511 ubiquitin-dependent protein catabolic process 2.63% (3/114) 2.49 0.016611 0.04257
GO:0046168 glycerol-3-phosphate catabolic process 0.88% (1/114) 5.83 0.017449 0.042624
GO:0032977 membrane insertase activity 0.88% (1/114) 5.83 0.017449 0.042624
GO:0140597 protein carrier chaperone 0.88% (1/114) 5.83 0.017449 0.042624
GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters 0.88% (1/114) 5.83 0.017449 0.042624
GO:0000278 mitotic cell cycle 0.88% (1/114) 5.83 0.017449 0.042624
GO:0016297 acyl-[acyl-carrier-protein] hydrolase activity 0.88% (1/114) 5.83 0.017449 0.042624
GO:0004306 ethanolamine-phosphate cytidylyltransferase activity 0.88% (1/114) 5.83 0.017449 0.042624
GO:0006646 phosphatidylethanolamine biosynthetic process 0.88% (1/114) 5.83 0.017449 0.042624
GO:0046337 phosphatidylethanolamine metabolic process 0.88% (1/114) 5.83 0.017449 0.042624
GO:0016874 ligase activity 2.63% (3/114) 2.45 0.017787 0.043222
GO:0004519 endonuclease activity 1.75% (2/114) 3.27 0.018386 0.044449
GO:0004175 endopeptidase activity 3.51% (4/114) 1.97 0.01962 0.047189
GO:0101005 deubiquitinase activity 1.75% (2/114) 3.2 0.020183 0.048294
GO:0009331 glycerol-3-phosphate dehydrogenase complex 0.88% (1/114) 5.57 0.020903 0.049264
GO:0009360 DNA polymerase III complex 0.88% (1/114) 5.57 0.020903 0.049264
GO:0006633 fatty acid biosynthetic process 1.75% (2/114) 3.18 0.020797 0.049512
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (114) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms