Coexpression cluster: Cluster_236 (Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0016072 rRNA metabolic process 13.04% (9/69) 5.82 0.0 0.0
GO:0006364 rRNA processing 11.59% (8/69) 5.75 0.0 0.0
GO:0034470 ncRNA processing 13.04% (9/69) 4.94 0.0 0.0
GO:0034660 ncRNA metabolic process 14.49% (10/69) 4.58 0.0 0.0
GO:0006396 RNA processing 15.94% (11/69) 3.83 0.0 0.0
GO:0016070 RNA metabolic process 20.29% (14/69) 3.12 0.0 0.0
GO:0006139 nucleobase-containing compound metabolic process 24.64% (17/69) 2.62 0.0 0.0
GO:0005488 binding 66.67% (46/69) 1.08 0.0 0.0
GO:0003723 RNA binding 18.84% (13/69) 3.07 0.0 0.0
GO:0090304 nucleic acid metabolic process 21.74% (15/69) 2.76 0.0 0.0
GO:0003676 nucleic acid binding 31.88% (22/69) 2.05 0.0 0.0
GO:0046483 heterocycle metabolic process 24.64% (17/69) 2.48 0.0 0.0
GO:0006725 cellular aromatic compound metabolic process 24.64% (17/69) 2.45 0.0 0.0
GO:1901360 organic cyclic compound metabolic process 24.64% (17/69) 2.42 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 24.64% (17/69) 2.18 0.0 2e-06
GO:0022613 ribonucleoprotein complex biogenesis 5.8% (4/69) 6.12 0.0 6e-06
GO:0097159 organic cyclic compound binding 43.48% (30/69) 1.29 1e-06 1.1e-05
GO:0003674 molecular_function 76.81% (53/69) 0.66 1e-06 2.3e-05
GO:0042254 ribosome biogenesis 4.35% (3/69) 6.0 1.4e-05 0.00021
GO:0044085 cellular component biogenesis 5.8% (4/69) 4.61 2.3e-05 0.000327
GO:0140098 catalytic activity, acting on RNA 8.7% (6/69) 3.17 5.6e-05 0.000778
GO:0004386 helicase activity 5.8% (4/69) 4.03 0.000108 0.001258
GO:0043227 membrane-bounded organelle 10.14% (7/69) 2.69 0.000107 0.001296
GO:0043231 intracellular membrane-bounded organelle 10.14% (7/69) 2.69 0.000107 0.001296
GO:0140640 catalytic activity, acting on a nucleic acid 10.14% (7/69) 2.69 0.000105 0.00138
GO:0005515 protein binding 28.99% (20/69) 1.26 0.000138 0.001542
GO:0005634 nucleus 8.7% (6/69) 2.88 0.000167 0.001792
GO:0008186 ATP-dependent activity, acting on RNA 4.35% (3/69) 4.76 0.000189 0.001889
GO:0003724 RNA helicase activity 4.35% (3/69) 4.76 0.000189 0.001889
GO:0043229 intracellular organelle 11.59% (8/69) 2.04 0.000711 0.006649
GO:0043226 organelle 11.59% (8/69) 2.04 0.000711 0.006649
GO:0006807 nitrogen compound metabolic process 28.99% (20/69) 1.08 0.000741 0.006712
GO:0005643 nuclear pore 2.9% (2/69) 5.55 0.000826 0.007263
GO:0005525 GTP binding 5.8% (4/69) 3.2 0.000954 0.007903
GO:0032561 guanyl ribonucleotide binding 5.8% (4/69) 3.2 0.000954 0.007903
GO:0035639 purine ribonucleoside triphosphate binding 18.84% (13/69) 1.4 0.00106 0.008312
GO:0019001 guanyl nucleotide binding 5.8% (4/69) 3.17 0.001043 0.008404
GO:0001522 pseudouridine synthesis 2.9% (2/69) 5.29 0.001194 0.009112
GO:0035246 peptidyl-arginine N-methylation 1.45% (1/69) 8.88 0.002127 0.014687
GO:0004638 phosphoribosylaminoimidazole carboxylase activity 1.45% (1/69) 8.88 0.002127 0.014687
GO:0035266 meristem growth 1.45% (1/69) 8.88 0.002127 0.014687
GO:0000107 imidazoleglycerol-phosphate synthase activity 1.45% (1/69) 8.88 0.002127 0.014687
GO:0044237 cellular metabolic process 26.09% (18/69) 1.01 0.002481 0.016733
GO:0009987 cellular process 34.78% (24/69) 0.8 0.002779 0.018318
GO:0032555 purine ribonucleotide binding 18.84% (13/69) 1.22 0.003239 0.020871
GO:0043170 macromolecule metabolic process 24.64% (17/69) 1.01 0.003319 0.020921
GO:0032553 ribonucleotide binding 18.84% (13/69) 1.2 0.003606 0.022252
GO:0006458 'de novo' protein folding 1.45% (1/69) 7.88 0.00425 0.023253
GO:0048589 developmental growth 1.45% (1/69) 7.88 0.00425 0.023253
GO:0000469 obsolete cleavage involved in rRNA processing 1.45% (1/69) 7.88 0.00425 0.023253
GO:0051083 'de novo' cotranslational protein folding 1.45% (1/69) 7.88 0.00425 0.023253
GO:0034511 U3 snoRNA binding 1.45% (1/69) 7.88 0.00425 0.023253
GO:0097367 carbohydrate derivative binding 18.84% (13/69) 1.19 0.00397 0.023984
GO:0009451 RNA modification 4.35% (3/69) 3.12 0.005032 0.026535
GO:0017076 purine nucleotide binding 18.84% (13/69) 1.15 0.00495 0.026584
GO:0004824 lysine-tRNA ligase activity 1.45% (1/69) 7.29 0.006368 0.029312
GO:0010073 meristem maintenance 1.45% (1/69) 7.29 0.006368 0.029312
GO:0042274 ribosomal small subunit biogenesis 1.45% (1/69) 7.29 0.006368 0.029312
GO:0051731 polynucleotide 5'-hydroxyl-kinase activity 1.45% (1/69) 7.29 0.006368 0.029312
GO:0000493 box H/ACA snoRNP assembly 1.45% (1/69) 7.29 0.006368 0.029312
GO:0006430 lysyl-tRNA aminoacylation 1.45% (1/69) 7.29 0.006368 0.029312
GO:0006450 regulation of translational fidelity 1.45% (1/69) 7.29 0.006368 0.029312
GO:0044238 primary metabolic process 28.99% (20/69) 0.83 0.00589 0.030502
GO:1990904 ribonucleoprotein complex 4.35% (3/69) 2.94 0.007149 0.031898
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity 2.9% (2/69) 3.99 0.007055 0.03197
GO:1901265 nucleoside phosphate binding 18.84% (13/69) 1.07 0.007757 0.033576
GO:0000166 nucleotide binding 18.84% (13/69) 1.07 0.007757 0.033576
GO:0000491 small nucleolar ribonucleoprotein complex assembly 1.45% (1/69) 6.88 0.008482 0.035138
GO:0040007 growth 1.45% (1/69) 6.88 0.008482 0.035138
GO:0043168 anion binding 18.84% (13/69) 1.06 0.008383 0.035751
GO:0005575 cellular_component 20.29% (14/69) 0.97 0.010087 0.041203
GO:1901363 heterocyclic compound binding 18.84% (13/69) 1.01 0.010588 0.042646
GO:0036094 small molecule binding 18.84% (13/69) 1.0 0.0113 0.044888
GO:0071840 cellular component organization or biogenesis 7.25% (5/69) 1.85 0.012708 0.04849
GO:0000105 histidine biosynthetic process 1.45% (1/69) 6.29 0.012696 0.04909
GO:0006547 histidine metabolic process 1.45% (1/69) 6.29 0.012696 0.04909
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (69) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms