Coexpression cluster: Cluster_192 (Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding 9.43% (5/53) 5.94 0.0 5e-06
GO:1990837 sequence-specific double-stranded DNA binding 9.43% (5/53) 5.35 0.0 7e-06
GO:0000976 transcription cis-regulatory region binding 9.43% (5/53) 5.41 0.0 8e-06
GO:0001067 transcription regulatory region nucleic acid binding 9.43% (5/53) 5.41 0.0 8e-06
GO:0009891 positive regulation of biosynthetic process 9.43% (5/53) 5.09 0.0 8e-06
GO:0031328 positive regulation of cellular biosynthetic process 9.43% (5/53) 5.09 0.0 8e-06
GO:0010557 positive regulation of macromolecule biosynthetic process 9.43% (5/53) 5.09 0.0 8e-06
GO:0045944 positive regulation of transcription by RNA polymerase II 9.43% (5/53) 5.54 0.0 1e-05
GO:0045935 positive regulation of nucleobase-containing compound metabolic process 9.43% (5/53) 5.1 0.0 1e-05
GO:0051254 positive regulation of RNA metabolic process 9.43% (5/53) 5.12 0.0 1e-05
GO:1902680 positive regulation of RNA biosynthetic process 9.43% (5/53) 5.12 0.0 1e-05
GO:0045893 positive regulation of DNA-templated transcription 9.43% (5/53) 5.12 0.0 1e-05
GO:0031325 positive regulation of cellular metabolic process 9.43% (5/53) 4.94 1e-06 1.2e-05
GO:0048522 positive regulation of cellular process 9.43% (5/53) 4.85 1e-06 1.5e-05
GO:0009893 positive regulation of metabolic process 9.43% (5/53) 4.79 1e-06 1.5e-05
GO:0051173 positive regulation of nitrogen compound metabolic process 9.43% (5/53) 4.8 1e-06 1.6e-05
GO:0010604 positive regulation of macromolecule metabolic process 9.43% (5/53) 4.8 1e-06 1.6e-05
GO:0006357 regulation of transcription by RNA polymerase II 9.43% (5/53) 4.58 2e-06 3e-05
GO:0048518 positive regulation of biological process 9.43% (5/53) 4.46 3e-06 4e-05
GO:0003690 double-stranded DNA binding 9.43% (5/53) 4.47 3e-06 4.1e-05
GO:0005634 nucleus 11.32% (6/53) 3.26 3.7e-05 0.000435
GO:0046983 protein dimerization activity 11.32% (6/53) 3.21 4.6e-05 0.000507
GO:0043565 sequence-specific DNA binding 9.43% (5/53) 3.33 0.000141 0.001496
GO:0043227 membrane-bounded organelle 11.32% (6/53) 2.85 0.000182 0.001707
GO:0043231 intracellular membrane-bounded organelle 11.32% (6/53) 2.85 0.000182 0.001707
GO:0005215 transporter activity 15.09% (8/53) 2.32 0.000177 0.001796
GO:0110165 cellular anatomical entity 22.64% (12/53) 1.59 0.000476 0.004305
GO:0006811 monoatomic ion transport 7.55% (4/53) 3.2 0.000944 0.00698
GO:0022857 transmembrane transporter activity 13.21% (7/53) 2.16 0.000894 0.007034
GO:0006355 regulation of DNA-templated transcription 15.09% (8/53) 1.99 0.000838 0.007051
GO:2001141 regulation of RNA biosynthetic process 15.09% (8/53) 1.99 0.000838 0.007051
GO:0051252 regulation of RNA metabolic process 15.09% (8/53) 1.98 0.000869 0.00707
GO:0019219 regulation of nucleobase-containing compound metabolic process 15.09% (8/53) 1.96 0.000935 0.007126
GO:0031326 regulation of cellular biosynthetic process 15.09% (8/53) 1.85 0.001524 0.009297
GO:0009889 regulation of biosynthetic process 15.09% (8/53) 1.85 0.001524 0.009297
GO:1901702 salt transmembrane transporter activity 5.66% (3/53) 3.81 0.001301 0.009336
GO:0003677 DNA binding 15.09% (8/53) 1.84 0.001604 0.009545
GO:0080090 regulation of primary metabolic process 15.09% (8/53) 1.87 0.001414 0.009582
GO:0051171 regulation of nitrogen compound metabolic process 15.09% (8/53) 1.87 0.001387 0.009671
GO:0010556 regulation of macromolecule biosynthetic process 15.09% (8/53) 1.85 0.00151 0.009696
GO:0010468 regulation of gene expression 15.09% (8/53) 1.86 0.001496 0.009865
GO:0015075 monoatomic ion transmembrane transporter activity 7.55% (4/53) 2.96 0.001736 0.010088
GO:0031323 regulation of cellular metabolic process 15.09% (8/53) 1.79 0.002001 0.011352
GO:0060255 regulation of macromolecule metabolic process 15.09% (8/53) 1.78 0.002081 0.011541
GO:0019222 regulation of metabolic process 15.09% (8/53) 1.77 0.002202 0.011941
GO:0050896 response to stimulus 13.21% (7/53) 1.93 0.002292 0.012159
GO:0005575 cellular_component 24.53% (13/53) 1.25 0.002382 0.012366
GO:0005548 phospholipid transporter activity 1.89% (1/53) 8.26 0.003265 0.016597
GO:0043229 intracellular organelle 11.32% (6/53) 2.0 0.00368 0.017957
GO:0043226 organelle 11.32% (6/53) 2.0 0.00368 0.017957
GO:0006950 response to stress 11.32% (6/53) 1.97 0.004131 0.019764
GO:0007602 phototransduction 1.89% (1/53) 7.67 0.004894 0.022529
GO:0009585 red, far-red light phototransduction 1.89% (1/53) 7.67 0.004894 0.022529
GO:0009584 detection of visible light 1.89% (1/53) 7.26 0.00652 0.026513
GO:0018298 obsolete protein-chromophore linkage 1.89% (1/53) 7.26 0.00652 0.026513
GO:0009583 detection of light stimulus 1.89% (1/53) 7.26 0.00652 0.026513
GO:0009582 detection of abiotic stimulus 1.89% (1/53) 7.26 0.00652 0.026513
GO:0009581 detection of external stimulus 1.89% (1/53) 7.26 0.00652 0.026513
GO:0051606 detection of stimulus 1.89% (1/53) 7.26 0.00652 0.026513
GO:0006812 monoatomic cation transport 5.66% (3/53) 3.03 0.005976 0.027003
GO:0017006 protein-tetrapyrrole linkage 1.89% (1/53) 6.94 0.008143 0.032572
GO:0008324 monoatomic cation transmembrane transporter activity 5.66% (3/53) 2.84 0.008601 0.03331
GO:0016020 membrane 11.32% (6/53) 1.75 0.008526 0.033553
GO:0005515 protein binding 24.53% (13/53) 1.02 0.009313 0.034961
GO:0003700 DNA-binding transcription factor activity 9.43% (5/53) 1.96 0.009212 0.03512
GO:0015318 inorganic molecular entity transmembrane transporter activity 5.66% (3/53) 2.74 0.010331 0.038194
GO:0050794 regulation of cellular process 15.09% (8/53) 1.39 0.01059 0.038565
GO:0140110 transcription regulator activity 9.43% (5/53) 1.87 0.011849 0.042517
GO:0009881 photoreceptor activity 1.89% (1/53) 6.26 0.012998 0.045306
GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines 1.89% (1/53) 6.26 0.012998 0.045306
GO:0009605 response to external stimulus 3.77% (2/53) 3.52 0.013313 0.045751
GO:0071577 zinc ion transmembrane transport 1.89% (1/53) 6.09 0.014611 0.048835
GO:0050789 regulation of biological process 15.09% (8/53) 1.3 0.014907 0.049153
GO:0098655 monoatomic cation transmembrane transport 3.77% (2/53) 3.45 0.014517 0.049195
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (53) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms