Coexpression cluster: Cluster_160 (Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0006497 protein lipidation 2.2% (4/182) 5.16 4e-06 0.000573
GO:0006505 GPI anchor metabolic process 2.2% (4/182) 5.23 3e-06 0.000613
GO:0006506 GPI anchor biosynthetic process 2.2% (4/182) 5.23 3e-06 0.000613
GO:0090304 nucleic acid metabolic process 10.99% (20/182) 1.78 2e-06 0.000967
GO:0009247 glycolipid biosynthetic process 2.2% (4/182) 4.78 1.3e-05 0.001377
GO:0006661 phosphatidylinositol biosynthetic process 2.2% (4/182) 4.67 1.8e-05 0.001558
GO:0006664 glycolipid metabolic process 2.2% (4/182) 4.52 2.7e-05 0.001575
GO:1903509 liposaccharide metabolic process 2.2% (4/182) 4.52 2.7e-05 0.001575
GO:0046467 membrane lipid biosynthetic process 2.2% (4/182) 4.52 2.7e-05 0.001575
GO:0006360 transcription by RNA polymerase I 1.1% (2/182) 7.48 3.1e-05 0.001656
GO:0006139 nucleobase-containing compound metabolic process 10.99% (20/182) 1.45 4.8e-05 0.001949
GO:0005667 transcription regulator complex 2.75% (5/182) 3.71 4.1e-05 0.001981
GO:0005669 transcription factor TFIID complex 1.65% (3/182) 5.36 4.8e-05 0.002101
GO:0006643 membrane lipid metabolic process 2.2% (4/182) 4.16 7.5e-05 0.002827
GO:0016070 RNA metabolic process 7.69% (14/182) 1.72 0.000102 0.003583
GO:0046474 glycerophospholipid biosynthetic process 2.2% (4/182) 4.02 0.000109 0.003611
GO:0046483 heterocycle metabolic process 10.99% (20/182) 1.31 0.000176 0.005471
GO:0032300 mismatch repair complex 1.1% (2/182) 6.48 0.000186 0.00548
GO:0045017 glycerolipid biosynthetic process 2.2% (4/182) 3.78 0.00021 0.005855
GO:0006725 cellular aromatic compound metabolic process 10.99% (20/182) 1.28 0.000232 0.006148
GO:0046695 SLIK (SAGA-like) complex 1.1% (2/182) 6.16 0.00031 0.007444
GO:1901360 organic cyclic compound metabolic process 10.99% (20/182) 1.25 0.000299 0.007541
GO:0008654 phospholipid biosynthetic process 2.2% (4/182) 3.48 0.000468 0.008849
GO:0043015 gamma-tubulin binding 1.1% (2/182) 5.89 0.000463 0.009065
GO:0005815 microtubule organizing center 1.1% (2/182) 5.89 0.000463 0.009065
GO:0000922 spindle pole 1.1% (2/182) 5.89 0.000463 0.009065
GO:1905368 peptidase complex 1.65% (3/182) 4.31 0.00046 0.010142
GO:0140513 nuclear protein-containing complex 3.85% (7/182) 2.37 0.000456 0.010486
GO:0007020 microtubule nucleation 1.1% (2/182) 5.67 0.000645 0.01138
GO:0043170 macromolecule metabolic process 20.88% (38/182) 0.77 0.000634 0.011569
GO:0046488 phosphatidylinositol metabolic process 2.2% (4/182) 3.33 0.000695 0.011856
GO:0032991 protein-containing complex 8.79% (16/182) 1.32 0.000742 0.012267
GO:1901137 carbohydrate derivative biosynthetic process 2.75% (5/182) 2.8 0.000798 0.012785
GO:0006397 mRNA processing 2.75% (5/182) 2.74 0.000947 0.01474
GO:0006974 DNA damage response 3.3% (6/182) 2.41 0.000989 0.014952
GO:0000124 SAGA complex 1.1% (2/182) 5.31 0.001098 0.016137
GO:0000226 microtubule cytoskeleton organization 1.65% (3/182) 3.67 0.001698 0.023636
GO:0004536 DNA nuclease activity 1.1% (2/182) 5.02 0.001665 0.023811
GO:0033554 cellular response to stress 3.3% (6/182) 2.22 0.001921 0.026052
GO:0016071 mRNA metabolic process 2.75% (5/182) 2.44 0.002385 0.027424
GO:0051716 cellular response to stimulus 3.3% (6/182) 2.16 0.002378 0.027952
GO:0090575 RNA polymerase II transcription regulator complex 1.65% (3/182) 3.48 0.002496 0.028091
GO:0030983 mismatched DNA binding 1.1% (2/182) 4.78 0.002345 0.028188
GO:0006298 mismatch repair 1.1% (2/182) 4.78 0.002345 0.028188
GO:0070461 SAGA-type complex 1.1% (2/182) 4.78 0.002345 0.028188
GO:1902494 catalytic complex 3.85% (7/182) 1.93 0.002583 0.028465
GO:0034641 cellular nitrogen compound metabolic process 10.99% (20/182) 1.01 0.002236 0.029568
GO:0006650 glycerophospholipid metabolic process 2.2% (4/182) 2.86 0.002297 0.029641
GO:0006807 nitrogen compound metabolic process 21.43% (39/182) 0.64 0.002949 0.031834
GO:0046486 glycerolipid metabolic process 2.2% (4/182) 2.75 0.003052 0.032288
GO:0005488 binding 41.21% (75/182) 0.39 0.003421 0.03548
GO:0032774 RNA biosynthetic process 2.75% (5/182) 2.15 0.005655 0.039886
GO:0045145 single-stranded DNA 5'-3' DNA exonuclease activity 0.55% (1/182) 7.48 0.005611 0.040108
GO:0009330 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex 0.55% (1/182) 7.48 0.005611 0.040108
GO:0008297 single-stranded DNA exodeoxyribonuclease activity 0.55% (1/182) 7.48 0.005611 0.040108
GO:0070860 RNA polymerase I core factor complex 0.55% (1/182) 7.48 0.005611 0.040108
GO:0000225 N-acetylglucosaminylphosphatidylinositol deacetylase activity 0.55% (1/182) 7.48 0.005611 0.040108
GO:0001046 core promoter sequence-specific DNA binding 0.55% (1/182) 7.48 0.005611 0.040108
GO:0001163 RNA polymerase I transcription regulatory region sequence-specific DNA binding 0.55% (1/182) 7.48 0.005611 0.040108
GO:0001164 RNA polymerase I core promoter sequence-specific DNA binding 0.55% (1/182) 7.48 0.005611 0.040108
GO:0001188 RNA polymerase I preinitiation complex assembly 0.55% (1/182) 7.48 0.005611 0.040108
GO:0060560 developmental growth involved in morphogenesis 0.55% (1/182) 7.48 0.005611 0.040108
GO:0048588 developmental cell growth 0.55% (1/182) 7.48 0.005611 0.040108
GO:0009932 cell tip growth 0.55% (1/182) 7.48 0.005611 0.040108
GO:0009826 unidimensional cell growth 0.55% (1/182) 7.48 0.005611 0.040108
GO:0009846 pollen germination 0.55% (1/182) 7.48 0.005611 0.040108
GO:0000120 RNA polymerase I transcription regulator complex 0.55% (1/182) 7.48 0.005611 0.040108
GO:0009860 pollen tube growth 0.55% (1/182) 7.48 0.005611 0.040108
GO:0018142 protein-DNA covalent cross-linking 0.55% (1/182) 7.48 0.005611 0.040108
GO:0042283 dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase activity 0.55% (1/182) 7.48 0.005611 0.040108
GO:0004610 phosphoacetylglucosamine mutase activity 0.55% (1/182) 7.48 0.005611 0.040108
GO:0018143 nucleic acid-protein covalent cross-linking 0.55% (1/182) 7.48 0.005611 0.040108
GO:0006352 DNA-templated transcription initiation 1.65% (3/182) 3.04 0.00588 0.040925
GO:0005634 nucleus 3.85% (7/182) 1.7 0.006084 0.041795
GO:0006644 phospholipid metabolic process 2.2% (4/182) 2.44 0.006462 0.04327
GO:0006259 DNA metabolic process 3.3% (6/182) 1.87 0.006385 0.043301
GO:0044238 primary metabolic process 23.63% (43/182) 0.53 0.006751 0.044638
GO:0007010 cytoskeleton organization 1.65% (3/182) 2.95 0.006938 0.045314
GO:0006396 RNA processing 3.85% (7/182) 1.78 0.004639 0.04544
GO:0006281 DNA repair 2.75% (5/182) 2.22 0.004569 0.045603
GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity 1.1% (2/182) 4.31 0.004515 0.045931
GO:0003690 double-stranded DNA binding 2.2% (4/182) 2.37 0.00774 0.049932
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (182) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms