Coexpression cluster: Cluster_163 (Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0005488 binding 66.67% (48/72) 1.08 0.0 0.0
GO:0090304 nucleic acid metabolic process 19.44% (14/72) 2.6 0.0 1e-05
GO:0140640 catalytic activity, acting on a nucleic acid 13.89% (10/72) 3.15 0.0 2.1e-05
GO:0006139 nucleobase-containing compound metabolic process 19.44% (14/72) 2.27 1e-06 7.5e-05
GO:0005515 protein binding 33.33% (24/72) 1.46 2e-06 0.000142
GO:0046483 heterocycle metabolic process 19.44% (14/72) 2.14 3e-06 0.000155
GO:1901360 organic cyclic compound metabolic process 19.44% (14/72) 2.08 4e-06 0.000166
GO:0006725 cellular aromatic compound metabolic process 19.44% (14/72) 2.1 4e-06 0.00017
GO:0003674 molecular_function 75.0% (54/72) 0.63 4e-06 0.000173
GO:0034641 cellular nitrogen compound metabolic process 19.44% (14/72) 1.84 2.9e-05 0.000865
GO:0140097 catalytic activity, acting on DNA 6.94% (5/72) 3.82 2.9e-05 0.000947
GO:0006259 DNA metabolic process 8.33% (6/72) 3.21 4.9e-05 0.001352
GO:0043170 macromolecule metabolic process 29.17% (21/72) 1.25 9.7e-05 0.002473
GO:0097159 organic cyclic compound binding 36.11% (26/72) 1.02 0.000164 0.003883
GO:0006950 response to stress 12.5% (9/72) 2.11 0.000225 0.004976
GO:0016070 RNA metabolic process 11.11% (8/72) 2.25 0.00027 0.005595
GO:0003676 nucleic acid binding 20.83% (15/72) 1.43 0.000335 0.006534
GO:0006265 DNA topological change 2.78% (2/72) 6.12 0.000373 0.00688
GO:0006807 nitrogen compound metabolic process 29.17% (21/72) 1.08 0.000504 0.007969
GO:0051276 chromosome organization 4.17% (3/72) 4.31 0.000474 0.008278
GO:0003916 DNA topoisomerase activity 2.78% (2/72) 5.91 0.000501 0.008311
GO:0006281 DNA repair 5.56% (4/72) 3.24 0.000877 0.009701
GO:0008150 biological_process 51.39% (37/72) 0.65 0.000862 0.009869
GO:0051020 GTPase binding 2.78% (2/72) 5.57 0.000811 0.009968
GO:0031267 small GTPase binding 2.78% (2/72) 5.57 0.000811 0.009968
GO:0003684 damaged DNA binding 2.78% (2/72) 5.65 0.000726 0.010048
GO:0050896 response to stimulus 12.5% (9/72) 1.85 0.000853 0.010113
GO:0097367 carbohydrate derivative binding 20.83% (15/72) 1.33 0.000704 0.010157
GO:0140098 catalytic activity, acting on RNA 6.94% (5/72) 2.84 0.000678 0.010229
GO:0032559 adenyl ribonucleotide binding 19.44% (14/72) 1.38 0.000777 0.010316
GO:0071103 DNA conformation change 2.78% (2/72) 5.36 0.00109 0.011313
GO:0006974 DNA damage response 5.56% (4/72) 3.16 0.001059 0.011342
GO:0030554 adenyl nucleotide binding 19.44% (14/72) 1.31 0.001285 0.012925
GO:0008094 ATP-dependent activity, acting on DNA 4.17% (3/72) 3.8 0.001331 0.012998
GO:0003678 DNA helicase activity 2.78% (2/72) 5.12 0.001525 0.014469
GO:0060147 regulation of post-transcriptional gene silencing 1.39% (1/72) 8.82 0.00222 0.014738
GO:0004819 glutamine-tRNA ligase activity 1.39% (1/72) 8.82 0.00222 0.014738
GO:0006425 glutaminyl-tRNA aminoacylation 1.39% (1/72) 8.82 0.00222 0.014738
GO:1990112 RQC complex 1.39% (1/72) 8.82 0.00222 0.014738
GO:0046975 histone H3K36 methyltransferase activity 1.39% (1/72) 8.82 0.00222 0.014738
GO:0010452 histone H3-K36 methylation 1.39% (1/72) 8.82 0.00222 0.014738
GO:1990116 ribosome-associated ubiquitin-dependent protein catabolic process 1.39% (1/72) 8.82 0.00222 0.014738
GO:0008240 tripeptidyl-peptidase activity 1.39% (1/72) 8.82 0.00222 0.014738
GO:0033554 cellular response to stress 5.56% (4/72) 2.98 0.00171 0.014936
GO:0032555 purine ribonucleotide binding 19.44% (14/72) 1.27 0.00168 0.015076
GO:0005634 nucleus 6.94% (5/72) 2.56 0.001636 0.015088
GO:1901363 heterocyclic compound binding 20.83% (15/72) 1.16 0.002334 0.015195
GO:0044238 primary metabolic process 30.56% (22/72) 0.9 0.001935 0.016058
GO:0032553 ribonucleotide binding 19.44% (14/72) 1.25 0.00189 0.016089
GO:0036094 small molecule binding 20.83% (15/72) 1.15 0.002529 0.016144
GO:0051716 cellular response to stimulus 5.56% (4/72) 2.91 0.001997 0.016171
GO:0017076 purine nucleotide binding 19.44% (14/72) 1.19 0.002673 0.016744
GO:0004386 helicase activity 4.17% (3/72) 3.55 0.002166 0.017125
GO:0043531 ADP binding 5.56% (4/72) 2.56 0.004774 0.023309
GO:0017038 protein import 1.39% (1/72) 7.82 0.004434 0.023368
GO:0140938 histone H3 methyltransferase activity 1.39% (1/72) 7.82 0.004434 0.023368
GO:0008452 RNA ligase activity 1.39% (1/72) 7.82 0.004434 0.023368
GO:0032039 integrator complex 1.39% (1/72) 7.82 0.004434 0.023368
GO:0003972 RNA ligase (ATP) activity 1.39% (1/72) 7.82 0.004434 0.023368
GO:0042054 histone methyltransferase activity 1.39% (1/72) 7.82 0.004434 0.023368
GO:0043564 Ku70:Ku80 complex 1.39% (1/72) 7.82 0.004434 0.023368
GO:0043168 anion binding 19.44% (14/72) 1.1 0.00476 0.023589
GO:0006310 DNA recombination 2.78% (2/72) 4.26 0.004923 0.023689
GO:0006511 ubiquitin-dependent protein catabolic process 4.17% (3/72) 3.15 0.004749 0.023889
GO:0043632 modification-dependent macromolecule catabolic process 4.17% (3/72) 3.15 0.004749 0.023889
GO:0019941 modification-dependent protein catabolic process 4.17% (3/72) 3.15 0.004749 0.023889
GO:0071704 organic substance metabolic process 30.56% (22/72) 0.79 0.005342 0.02498
GO:0043231 intracellular membrane-bounded organelle 6.94% (5/72) 2.14 0.0056 0.025125
GO:0043227 membrane-bounded organelle 6.94% (5/72) 2.14 0.0056 0.025125
GO:0016579 protein deubiquitination 2.78% (2/72) 4.2 0.005341 0.02533
GO:0070646 protein modification by small protein removal 2.78% (2/72) 4.14 0.005774 0.025559
GO:0004843 cysteine-type deubiquitinase activity 2.78% (2/72) 4.17 0.005555 0.025616
GO:0006886 intracellular protein transport 4.17% (3/72) 3.19 0.004409 0.026141
GO:0006303 double-strand break repair via nonhomologous end joining 1.39% (1/72) 7.23 0.006644 0.02626
GO:0016073 snRNA metabolic process 1.39% (1/72) 7.23 0.006644 0.02626
GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation 1.39% (1/72) 7.23 0.006644 0.02626
GO:0016180 snRNA processing 1.39% (1/72) 7.23 0.006644 0.02626
GO:0090576 RNA polymerase III transcription regulator complex 1.39% (1/72) 7.23 0.006644 0.02626
GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation 1.39% (1/72) 7.23 0.006644 0.02626
GO:0000127 transcription factor TFIIIC complex 1.39% (1/72) 7.23 0.006644 0.02626
GO:1901265 nucleoside phosphate binding 19.44% (14/72) 1.12 0.004372 0.026392
GO:0000166 nucleotide binding 19.44% (14/72) 1.12 0.004372 0.026392
GO:0008152 metabolic process 31.94% (23/72) 0.75 0.006074 0.026534
GO:0051603 proteolysis involved in protein catabolic process 4.17% (3/72) 3.02 0.006162 0.02657
GO:0043138 3'-5' DNA helicase activity 1.39% (1/72) 6.82 0.008849 0.03159
GO:0048608 reproductive structure development 1.39% (1/72) 6.82 0.008849 0.03159
GO:0004560 alpha-L-fucosidase activity 1.39% (1/72) 6.82 0.008849 0.03159
GO:0009908 flower development 1.39% (1/72) 6.82 0.008849 0.03159
GO:0090567 reproductive shoot system development 1.39% (1/72) 6.82 0.008849 0.03159
GO:0006384 transcription initiation at RNA polymerase III promoter 1.39% (1/72) 6.82 0.008849 0.03159
GO:0015928 fucosidase activity 1.39% (1/72) 6.82 0.008849 0.03159
GO:0019783 ubiquitin-like protein peptidase activity 2.78% (2/72) 3.82 0.008962 0.031651
GO:0019899 enzyme binding 2.78% (2/72) 3.79 0.009233 0.03193
GO:0006352 DNA-templated transcription initiation 2.78% (2/72) 3.79 0.009233 0.03193
GO:0044237 cellular metabolic process 23.61% (17/72) 0.87 0.009429 0.031944
GO:0016043 cellular component organization 6.94% (5/72) 1.96 0.009407 0.032196
GO:0034660 ncRNA metabolic process 4.17% (3/72) 2.78 0.009676 0.03245
GO:0101005 deubiquitinase activity 2.78% (2/72) 3.86 0.00843 0.032926
GO:0032774 RNA biosynthetic process 4.17% (3/72) 2.75 0.010217 0.033919
GO:0006396 RNA processing 5.56% (4/72) 2.31 0.008815 0.034028
GO:0003677 DNA binding 11.11% (8/72) 1.4 0.010755 0.035008
GO:0009987 cellular process 31.94% (23/72) 0.68 0.010724 0.035251
GO:0016886 ligase activity, forming phosphoric ester bonds 1.39% (1/72) 6.49 0.011049 0.035615
GO:0015031 protein transport 4.17% (3/72) 2.69 0.011349 0.036229
GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity 1.39% (1/72) 6.23 0.013245 0.041878
GO:0070727 cellular macromolecule localization 4.17% (3/72) 2.51 0.015866 0.045409
GO:0051649 establishment of localization in cell 4.17% (3/72) 2.51 0.015866 0.045409
GO:0008104 protein localization 4.17% (3/72) 2.51 0.015866 0.045409
GO:0033036 macromolecule localization 4.17% (3/72) 2.51 0.015866 0.045409
GO:0046907 intracellular transport 4.17% (3/72) 2.52 0.015514 0.046403
GO:0045184 establishment of protein localization 4.17% (3/72) 2.55 0.014825 0.046432
GO:0006996 organelle organization 4.17% (3/72) 2.52 0.015689 0.046508
GO:0042162 telomeric DNA binding 1.39% (1/72) 6.01 0.015435 0.046586
GO:0016278 lysine N-methyltransferase activity 1.39% (1/72) 6.01 0.015435 0.046586
GO:0016279 protein-lysine N-methyltransferase activity 1.39% (1/72) 6.01 0.015435 0.046586
GO:0071840 cellular component organization or biogenesis 6.94% (5/72) 1.79 0.015069 0.046757
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (72) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms