Coexpression cluster: Cluster_60 (Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0044281 small molecule metabolic process 30.21% (29/96) 3.73 0.0 0.0
GO:0006082 organic acid metabolic process 22.92% (22/96) 4.03 0.0 0.0
GO:0043436 oxoacid metabolic process 22.92% (22/96) 4.03 0.0 0.0
GO:0019752 carboxylic acid metabolic process 22.92% (22/96) 4.04 0.0 0.0
GO:0006090 pyruvate metabolic process 13.54% (13/96) 6.1 0.0 0.0
GO:0055086 nucleobase-containing small molecule metabolic process 16.67% (16/96) 4.51 0.0 0.0
GO:0009117 nucleotide metabolic process 15.62% (15/96) 4.69 0.0 0.0
GO:0006753 nucleoside phosphate metabolic process 15.62% (15/96) 4.67 0.0 0.0
GO:0046034 ATP metabolic process 12.5% (12/96) 5.53 0.0 0.0
GO:0009205 purine ribonucleoside triphosphate metabolic process 12.5% (12/96) 5.45 0.0 0.0
GO:0009144 purine nucleoside triphosphate metabolic process 12.5% (12/96) 5.45 0.0 0.0
GO:0009141 nucleoside triphosphate metabolic process 12.5% (12/96) 5.31 0.0 0.0
GO:0072526 pyridine-containing compound catabolic process 10.42% (10/96) 6.11 0.0 0.0
GO:0072523 purine-containing compound catabolic process 10.42% (10/96) 6.11 0.0 0.0
GO:0009154 purine ribonucleotide catabolic process 10.42% (10/96) 6.11 0.0 0.0
GO:0009137 purine nucleoside diphosphate catabolic process 10.42% (10/96) 6.11 0.0 0.0
GO:0009179 purine ribonucleoside diphosphate metabolic process 10.42% (10/96) 6.11 0.0 0.0
GO:0046032 ADP catabolic process 10.42% (10/96) 6.11 0.0 0.0
GO:0009181 purine ribonucleoside diphosphate catabolic process 10.42% (10/96) 6.11 0.0 0.0
GO:0009185 ribonucleoside diphosphate metabolic process 10.42% (10/96) 6.11 0.0 0.0
GO:0009191 ribonucleoside diphosphate catabolic process 10.42% (10/96) 6.11 0.0 0.0
GO:0046031 ADP metabolic process 10.42% (10/96) 6.11 0.0 0.0
GO:0009261 ribonucleotide catabolic process 10.42% (10/96) 6.11 0.0 0.0
GO:0009135 purine nucleoside diphosphate metabolic process 10.42% (10/96) 6.11 0.0 0.0
GO:0009134 nucleoside diphosphate catabolic process 10.42% (10/96) 6.11 0.0 0.0
GO:0019364 pyridine nucleotide catabolic process 10.42% (10/96) 6.11 0.0 0.0
GO:0006195 purine nucleotide catabolic process 10.42% (10/96) 6.11 0.0 0.0
GO:0006096 glycolytic process 10.42% (10/96) 6.11 0.0 0.0
GO:0016052 carbohydrate catabolic process 11.46% (11/96) 5.65 0.0 0.0
GO:0046496 nicotinamide nucleotide metabolic process 11.46% (11/96) 5.65 0.0 0.0
GO:0072521 purine-containing compound metabolic process 14.58% (14/96) 4.69 0.0 0.0
GO:0009132 nucleoside diphosphate metabolic process 10.42% (10/96) 6.08 0.0 0.0
GO:0019362 pyridine nucleotide metabolic process 11.46% (11/96) 5.63 0.0 0.0
GO:0009166 nucleotide catabolic process 10.42% (10/96) 6.05 0.0 0.0
GO:0009259 ribonucleotide metabolic process 13.54% (13/96) 4.94 0.0 0.0
GO:0006163 purine nucleotide metabolic process 14.58% (14/96) 4.78 0.0 0.0
GO:0009199 ribonucleoside triphosphate metabolic process 12.5% (12/96) 5.37 0.0 0.0
GO:0019693 ribose phosphate metabolic process 13.54% (13/96) 4.91 0.0 0.0
GO:0009150 purine ribonucleotide metabolic process 13.54% (13/96) 5.01 0.0 0.0
GO:1901292 nucleoside phosphate catabolic process 10.42% (10/96) 5.97 0.0 0.0
GO:0072524 pyridine-containing compound metabolic process 11.46% (11/96) 5.5 0.0 0.0
GO:1901135 carbohydrate derivative metabolic process 15.62% (15/96) 4.32 0.0 0.0
GO:0046434 organophosphate catabolic process 10.42% (10/96) 5.84 0.0 0.0
GO:0032787 monocarboxylic acid metabolic process 13.54% (13/96) 4.74 0.0 0.0
GO:0006091 generation of precursor metabolites and energy 13.54% (13/96) 4.63 0.0 0.0
GO:0019637 organophosphate metabolic process 16.67% (16/96) 3.9 0.0 0.0
GO:1901136 carbohydrate derivative catabolic process 10.42% (10/96) 5.49 0.0 0.0
GO:0034655 nucleobase-containing compound catabolic process 10.42% (10/96) 5.02 0.0 0.0
GO:0044270 cellular nitrogen compound catabolic process 10.42% (10/96) 4.92 0.0 0.0
GO:0046700 heterocycle catabolic process 10.42% (10/96) 4.9 0.0 0.0
GO:0019439 aromatic compound catabolic process 10.42% (10/96) 4.57 0.0 0.0
GO:1901361 organic cyclic compound catabolic process 10.42% (10/96) 4.55 0.0 0.0
GO:1901565 organonitrogen compound catabolic process 10.42% (10/96) 4.51 0.0 0.0
GO:0003824 catalytic activity 55.21% (53/96) 1.21 0.0 0.0
GO:0072350 tricarboxylic acid metabolic process 5.21% (5/96) 7.4 0.0 0.0
GO:0005975 carbohydrate metabolic process 15.62% (15/96) 3.09 0.0 0.0
GO:1901360 organic cyclic compound metabolic process 22.92% (22/96) 2.31 0.0 0.0
GO:0000287 magnesium ion binding 8.33% (8/96) 4.77 0.0 0.0
GO:0072351 tricarboxylic acid biosynthetic process 4.17% (4/96) 7.82 0.0 0.0
GO:0030418 nicotianamine biosynthetic process 4.17% (4/96) 7.82 0.0 0.0
GO:0030410 nicotianamine synthase activity 4.17% (4/96) 7.82 0.0 0.0
GO:0030417 nicotianamine metabolic process 4.17% (4/96) 7.82 0.0 0.0
GO:0046483 heterocycle metabolic process 21.88% (21/96) 2.3 0.0 0.0
GO:0008152 metabolic process 45.83% (44/96) 1.27 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 22.92% (22/96) 2.08 0.0 0.0
GO:0044237 cellular metabolic process 35.42% (34/96) 1.45 0.0 0.0
GO:0006099 tricarboxylic acid cycle 5.21% (5/96) 5.86 0.0 0.0
GO:0044248 cellular catabolic process 10.42% (10/96) 3.39 0.0 0.0
GO:0000015 phosphopyruvate hydratase complex 3.12% (3/96) 7.66 0.0 2e-06
GO:0004634 phosphopyruvate hydratase activity 3.12% (3/96) 7.66 0.0 2e-06
GO:0006139 nucleobase-containing compound metabolic process 17.71% (17/96) 2.14 0.0 2e-06
GO:0071704 organic substance metabolic process 39.58% (38/96) 1.16 0.0 2e-06
GO:0042401 biogenic amine biosynthetic process 4.17% (4/96) 5.94 1e-06 3e-06
GO:0009309 amine biosynthetic process 4.17% (4/96) 5.94 1e-06 3e-06
GO:1901575 organic substance catabolic process 11.46% (11/96) 2.81 1e-06 3e-06
GO:0009056 catabolic process 11.46% (11/96) 2.76 1e-06 4e-06
GO:0006725 cellular aromatic compound metabolic process 17.71% (17/96) 1.97 1e-06 8e-06
GO:0044238 primary metabolic process 36.46% (35/96) 1.16 1e-06 8e-06
GO:0006796 phosphate-containing compound metabolic process 18.75% (18/96) 1.85 2e-06 1.1e-05
GO:0030955 potassium ion binding 3.12% (3/96) 6.82 2e-06 1.1e-05
GO:0031420 alkali metal ion binding 3.12% (3/96) 6.82 2e-06 1.1e-05
GO:0004743 pyruvate kinase activity 3.12% (3/96) 6.82 2e-06 1.1e-05
GO:0006793 phosphorus metabolic process 18.75% (18/96) 1.85 2e-06 1.1e-05
GO:0006576 biogenic amine metabolic process 4.17% (4/96) 5.23 4e-06 2.1e-05
GO:0016836 hydro-lyase activity 4.17% (4/96) 4.82 1.3e-05 6.7e-05
GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors 4.17% (4/96) 4.76 1.5e-05 7.8e-05
GO:1901564 organonitrogen compound metabolic process 26.04% (25/96) 1.3 1.6e-05 8.1e-05
GO:0006006 glucose metabolic process 3.12% (3/96) 5.82 2e-05 0.000101
GO:0009308 amine metabolic process 4.17% (4/96) 4.59 2.4e-05 0.000118
GO:0016418 S-acetyltransferase activity 2.08% (2/96) 7.82 2.6e-05 0.000126
GO:0004742 dihydrolipoyllysine-residue acetyltransferase activity 2.08% (2/96) 7.82 2.6e-05 0.000126
GO:0004449 isocitrate dehydrogenase (NAD+) activity 2.08% (2/96) 7.82 2.6e-05 0.000126
GO:0008150 biological_process 53.12% (51/96) 0.69 3.2e-05 0.000155
GO:1902494 catalytic complex 7.29% (7/96) 2.85 5.5e-05 0.000261
GO:0016491 oxidoreductase activity 14.58% (14/96) 1.77 5.6e-05 0.000265
GO:0006807 nitrogen compound metabolic process 29.17% (28/96) 1.08 6.4e-05 0.000299
GO:1901362 organic cyclic compound biosynthetic process 8.33% (8/96) 2.52 8.2e-05 0.000378
GO:0051287 NAD binding 4.17% (4/96) 4.12 8.7e-05 0.000392
GO:0016417 S-acyltransferase activity 2.08% (2/96) 7.08 8.6e-05 0.000393
GO:0016835 carbon-oxygen lyase activity 4.17% (4/96) 4.04 0.000106 0.000472
GO:0009987 cellular process 36.46% (35/96) 0.87 0.000122 0.000539
GO:0045254 pyruvate dehydrogenase complex 2.08% (2/96) 6.82 0.000129 0.00056
GO:0004448 isocitrate dehydrogenase [NAD(P)+] activity 2.08% (2/96) 6.82 0.000129 0.00056
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor 4.17% (4/96) 3.85 0.000179 0.00077
GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor 3.12% (3/96) 4.66 0.000229 0.000976
GO:0019318 hexose metabolic process 3.12% (3/96) 4.63 0.000247 0.001041
GO:0009058 biosynthetic process 13.54% (13/96) 1.65 0.000253 0.001056
GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups 4.17% (4/96) 3.62 0.000327 0.001341
GO:0018130 heterocycle biosynthetic process 7.29% (7/96) 2.44 0.000326 0.001351
GO:0046394 carboxylic acid biosynthetic process 5.21% (5/96) 3.06 0.000344 0.001386
GO:0016053 organic acid biosynthetic process 5.21% (5/96) 3.06 0.000344 0.001386
GO:0016740 transferase activity 21.88% (21/96) 1.15 0.000361 0.00144
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors 4.17% (4/96) 3.55 0.000387 0.001532
GO:0016829 lyase activity 5.21% (5/96) 2.88 0.000609 0.002387
GO:0005996 monosaccharide metabolic process 3.12% (3/96) 4.18 0.000621 0.002415
GO:0050661 NADP binding 3.12% (3/96) 4.05 0.000798 0.003076
GO:0044283 small molecule biosynthetic process 5.21% (5/96) 2.75 0.000919 0.00351
GO:0044249 cellular biosynthetic process 11.46% (11/96) 1.61 0.000954 0.003612
GO:1901566 organonitrogen compound biosynthetic process 8.33% (8/96) 1.96 0.001091 0.004097
GO:1901576 organic substance biosynthetic process 11.46% (11/96) 1.51 0.001684 0.006275
GO:0044271 cellular nitrogen compound biosynthetic process 8.33% (8/96) 1.77 0.002486 0.009183
GO:0051540 metal cluster binding 3.12% (3/96) 3.48 0.002527 0.009184
GO:0051536 iron-sulfur cluster binding 3.12% (3/96) 3.48 0.002527 0.009184
GO:0090407 organophosphate biosynthetic process 4.17% (4/96) 2.82 0.002585 0.00932
GO:0015078 proton transmembrane transporter activity 3.12% (3/96) 3.45 0.002688 0.009612
GO:0050311 sulfite reductase (ferredoxin) activity 1.04% (1/96) 8.4 0.002959 0.009872
GO:0004333 fumarate hydratase activity 1.04% (1/96) 8.4 0.002959 0.009872
GO:0016673 oxidoreductase activity, acting on a sulfur group of donors, iron-sulfur protein as acceptor 1.04% (1/96) 8.4 0.002959 0.009872
GO:0004108 citrate (Si)-synthase activity 1.04% (1/96) 8.4 0.002959 0.009872
GO:0006106 fumarate metabolic process 1.04% (1/96) 8.4 0.002959 0.009872
GO:0008930 methylthioadenosine nucleosidase activity 1.04% (1/96) 8.4 0.002959 0.009872
GO:0036440 citrate synthase activity 1.04% (1/96) 8.4 0.002959 0.009872
GO:0008477 purine nucleosidase activity 1.04% (1/96) 8.4 0.002959 0.009872
GO:0006101 citrate metabolic process 1.04% (1/96) 8.4 0.002959 0.009872
GO:0046961 proton-transporting ATPase activity, rotational mechanism 2.08% (2/96) 4.59 0.003116 0.010167
GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism 2.08% (2/96) 4.59 0.003116 0.010167
GO:0042625 ATPase-coupled ion transmembrane transporter activity 2.08% (2/96) 4.59 0.003116 0.010167
GO:0051539 4 iron, 4 sulfur cluster binding 2.08% (2/96) 4.49 0.003572 0.01157
GO:0003674 molecular_function 62.5% (60/96) 0.36 0.004083 0.013131
GO:1901293 nucleoside phosphate biosynthetic process 3.12% (3/96) 3.19 0.004422 0.014019
GO:0009165 nucleotide biosynthetic process 3.12% (3/96) 3.19 0.004422 0.014019
GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity 1.04% (1/96) 7.4 0.00591 0.017972
GO:0045239 tricarboxylic acid cycle enzyme complex 1.04% (1/96) 7.4 0.00591 0.017972
GO:0004046 aminoacylase activity 1.04% (1/96) 7.4 0.00591 0.017972
GO:0008934 inositol monophosphate 1-phosphatase activity 1.04% (1/96) 7.4 0.00591 0.017972
GO:0006007 glucose catabolic process 1.04% (1/96) 7.4 0.00591 0.017972
GO:0052834 inositol monophosphate phosphatase activity 1.04% (1/96) 7.4 0.00591 0.017972
GO:0032991 protein-containing complex 9.38% (9/96) 1.41 0.006729 0.020325
GO:0009555 pollen development 1.04% (1/96) 6.82 0.008852 0.025694
GO:0048229 gametophyte development 1.04% (1/96) 6.82 0.008852 0.025694
GO:0046365 monosaccharide catabolic process 1.04% (1/96) 6.82 0.008852 0.025694
GO:0004618 phosphoglycerate kinase activity 1.04% (1/96) 6.82 0.008852 0.025694
GO:0019320 hexose catabolic process 1.04% (1/96) 6.82 0.008852 0.025694
GO:0004807 triose-phosphate isomerase activity 1.04% (1/96) 6.82 0.008852 0.025694
GO:1902600 proton transmembrane transport 2.08% (2/96) 3.76 0.009681 0.027918
GO:0016667 oxidoreductase activity, acting on a sulfur group of donors 2.08% (2/96) 3.67 0.010828 0.031025
GO:0004332 fructose-bisphosphate aldolase activity 1.04% (1/96) 6.4 0.011786 0.033133
GO:0004148 dihydrolipoyl dehydrogenase activity 1.04% (1/96) 6.4 0.011786 0.033133
GO:0047334 diphosphate-fructose-6-phosphate 1-phosphotransferase activity 1.04% (1/96) 6.4 0.011786 0.033133
GO:1990204 oxidoreductase complex 2.08% (2/96) 3.59 0.012031 0.033612
GO:0016407 acetyltransferase activity 2.08% (2/96) 3.54 0.012865 0.035497
GO:0044272 sulfur compound biosynthetic process 2.08% (2/96) 3.54 0.012865 0.035497
GO:0046872 metal ion binding 11.46% (11/96) 1.1 0.013313 0.036286
GO:0019829 ATPase-coupled monoatomic cation transmembrane transporter activity 2.08% (2/96) 3.52 0.013291 0.036448
GO:0004619 phosphoglycerate mutase activity 1.04% (1/96) 6.08 0.014711 0.039375
GO:0061578 K63-linked deubiquitinase activity 1.04% (1/96) 6.08 0.014711 0.039375
GO:0004749 ribose phosphate diphosphokinase activity 1.04% (1/96) 6.08 0.014711 0.039375
GO:0043169 cation binding 11.46% (11/96) 1.06 0.016579 0.044113
GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor 1.04% (1/96) 5.82 0.017627 0.045545
GO:0071267 L-methionine salvage 1.04% (1/96) 5.82 0.017627 0.045545
GO:0019509 L-methionine salvage from methylthioadenosine 1.04% (1/96) 5.82 0.017627 0.045545
GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity 1.04% (1/96) 5.82 0.017627 0.045545
GO:0043102 amino acid salvage 1.04% (1/96) 5.82 0.017627 0.045545
GO:0009152 purine ribonucleotide biosynthetic process 2.08% (2/96) 3.29 0.017879 0.04593
GO:0015399 primary active transmembrane transporter activity 3.12% (3/96) 2.43 0.018465 0.047164
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (96) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms