Coexpression cluster: Cluster_70 (Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0015979 photosynthesis 8.64% (7/81) 4.81 0.0 2e-06
GO:0009521 photosystem 7.41% (6/81) 4.75 0.0 1.5e-05
GO:0009765 photosynthesis, light harvesting 4.94% (4/81) 6.32 0.0 1.7e-05
GO:0006091 generation of precursor metabolites and energy 8.64% (7/81) 3.99 0.0 1.9e-05
GO:0009654 photosystem II oxygen evolving complex 4.94% (4/81) 6.12 0.0 2.3e-05
GO:0098796 membrane protein complex 9.88% (8/81) 3.4 1e-06 4.9e-05
GO:0005575 cellular_component 29.63% (24/81) 1.52 1e-06 5.7e-05
GO:0042549 photosystem II stabilization 2.47% (2/81) 8.65 6e-06 0.000233
GO:0110165 cellular anatomical entity 23.46% (19/81) 1.64 7e-06 0.000237
GO:0042548 regulation of photosynthesis, light reaction 2.47% (2/81) 8.06 1.8e-05 0.000266
GO:0051341 regulation of oxidoreductase activity 2.47% (2/81) 8.06 1.8e-05 0.000266
GO:0051353 positive regulation of oxidoreductase activity 2.47% (2/81) 8.06 1.8e-05 0.000266
GO:0010109 regulation of photosynthesis 2.47% (2/81) 8.06 1.8e-05 0.000266
GO:1901671 positive regulation of superoxide dismutase activity 2.47% (2/81) 8.06 1.8e-05 0.000266
GO:1901668 regulation of superoxide dismutase activity 2.47% (2/81) 8.06 1.8e-05 0.000266
GO:0043467 regulation of generation of precursor metabolites and energy 2.47% (2/81) 8.06 1.8e-05 0.000266
GO:0044237 cellular metabolic process 30.86% (25/81) 1.25 2e-05 0.000282
GO:0009987 cellular process 40.74% (33/81) 1.03 1.4e-05 0.000304
GO:0006412 translation 8.64% (7/81) 3.04 2.4e-05 0.000314
GO:0009523 photosystem II 4.94% (4/81) 4.79 1.4e-05 0.000322
GO:0005840 ribosome 8.64% (7/81) 3.18 1.3e-05 0.000326
GO:0003735 structural constituent of ribosome 8.64% (7/81) 3.01 2.7e-05 0.000329
GO:0043043 peptide biosynthetic process 8.64% (7/81) 3.01 2.7e-05 0.000329
GO:1990204 oxidoreductase complex 4.94% (4/81) 4.84 1.2e-05 0.000331
GO:0019898 extrinsic component of membrane 3.7% (3/81) 6.06 1.2e-05 0.000361
GO:0009059 macromolecule biosynthetic process 11.11% (9/81) 2.48 3.3e-05 0.000386
GO:0006518 peptide metabolic process 8.64% (7/81) 2.94 3.7e-05 0.000419
GO:0009055 electron transfer activity 6.17% (5/81) 3.71 4.2e-05 0.000438
GO:0043604 amide biosynthetic process 8.64% (7/81) 2.91 4.1e-05 0.000448
GO:1901566 organonitrogen compound biosynthetic process 11.11% (9/81) 2.37 6e-05 0.000609
GO:0005198 structural molecule activity 8.64% (7/81) 2.81 6.5e-05 0.000638
GO:0043232 intracellular non-membrane-bounded organelle 8.64% (7/81) 2.79 7.1e-05 0.000648
GO:0043228 non-membrane-bounded organelle 8.64% (7/81) 2.79 7.1e-05 0.000648
GO:0043603 amide metabolic process 8.64% (7/81) 2.78 7.5e-05 0.000669
GO:0044271 cellular nitrogen compound biosynthetic process 11.11% (9/81) 2.18 0.000163 0.001373
GO:0016491 oxidoreductase activity 14.81% (12/81) 1.8 0.000161 0.001394
GO:0044249 cellular biosynthetic process 13.58% (11/81) 1.85 0.000218 0.001787
GO:1901576 organic substance biosynthetic process 13.58% (11/81) 1.75 0.0004 0.003192
GO:0032991 protein-containing complex 12.35% (10/81) 1.81 0.000544 0.004228
GO:0008152 metabolic process 34.57% (28/81) 0.86 0.000682 0.005167
GO:0009058 biosynthetic process 13.58% (11/81) 1.65 0.000721 0.005331
GO:0022900 electron transport chain 3.7% (3/81) 3.86 0.001193 0.00861
GO:1902494 catalytic complex 6.17% (5/81) 2.61 0.001383 0.009747
GO:0051536 iron-sulfur cluster binding 3.7% (3/81) 3.72 0.001555 0.010028
GO:0051540 metal cluster binding 3.7% (3/81) 3.72 0.001555 0.010028
GO:0050136 NADH dehydrogenase (quinone) activity 2.47% (2/81) 5.12 0.001506 0.010139
GO:0008137 NADH dehydrogenase (ubiquinone) activity 2.47% (2/81) 5.12 0.001506 0.010139
GO:0009522 photosystem I 2.47% (2/81) 5.0 0.00178 0.011235
GO:0043085 positive regulation of catalytic activity 2.47% (2/81) 4.89 0.002076 0.011867
GO:0015453 oxidoreduction-driven active transmembrane transporter activity 2.47% (2/81) 4.89 0.002076 0.011867
GO:0046148 pigment biosynthetic process 2.47% (2/81) 4.95 0.001925 0.011904
GO:0043229 intracellular organelle 9.88% (8/81) 1.81 0.002035 0.012092
GO:0043226 organelle 9.88% (8/81) 1.81 0.002035 0.012092
GO:0003954 NADH dehydrogenase activity 2.47% (2/81) 4.84 0.002232 0.012522
GO:0048529 magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity 1.23% (1/81) 8.65 0.002497 0.013045
GO:0010242 oxygen evolving activity 1.23% (1/81) 8.65 0.002497 0.013045
GO:0004424 imidazoleglycerol-phosphate dehydratase activity 1.23% (1/81) 8.65 0.002497 0.013045
GO:0003955 NAD(P)H dehydrogenase (quinone) activity 2.47% (2/81) 4.79 0.002393 0.013184
GO:0042440 pigment metabolic process 2.47% (2/81) 4.69 0.002732 0.013797
GO:0044093 positive regulation of molecular function 2.47% (2/81) 4.69 0.002732 0.013797
GO:0051537 2 iron, 2 sulfur cluster binding 2.47% (2/81) 4.6 0.003092 0.015112
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor 2.47% (2/81) 4.6 0.003092 0.015112
GO:0006457 protein folding 3.7% (3/81) 3.34 0.003335 0.016039
GO:0071277 cellular response to calcium ion 1.23% (1/81) 7.65 0.004988 0.02099
GO:1902075 cellular response to salt 1.23% (1/81) 7.65 0.004988 0.02099
GO:1901701 cellular response to oxygen-containing compound 1.23% (1/81) 7.65 0.004988 0.02099
GO:0090333 regulation of stomatal closure 1.23% (1/81) 7.65 0.004988 0.02099
GO:0071248 cellular response to metal ion 1.23% (1/81) 7.65 0.004988 0.02099
GO:0071241 cellular response to inorganic substance 1.23% (1/81) 7.65 0.004988 0.02099
GO:0051592 response to calcium ion 1.23% (1/81) 7.65 0.004988 0.02099
GO:0009704 de-etiolation 1.23% (1/81) 7.65 0.004988 0.02099
GO:0017111 ribonucleoside triphosphate phosphatase activity 6.17% (5/81) 2.19 0.004946 0.023414
GO:0016462 pyrophosphatase activity 6.17% (5/81) 2.1 0.006277 0.026052
GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen 2.47% (2/81) 4.06 0.006448 0.026402
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 6.17% (5/81) 2.07 0.006909 0.027913
GO:0016817 hydrolase activity, acting on acid anhydrides 6.17% (5/81) 2.06 0.007029 0.028022
GO:0051920 peroxiredoxin activity 1.23% (1/81) 7.06 0.007473 0.029405
GO:0010207 photosystem II assembly 1.23% (1/81) 6.65 0.009951 0.037224
GO:0010277 chlorophyllide a oxygenase [overall] activity 1.23% (1/81) 6.65 0.009951 0.037224
GO:0000774 adenyl-nucleotide exchange factor activity 1.23% (1/81) 6.65 0.009951 0.037224
GO:0005956 protein kinase CK2 complex 1.23% (1/81) 6.65 0.009951 0.037224
GO:0016651 oxidoreductase activity, acting on NAD(P)H 2.47% (2/81) 3.71 0.010244 0.037854
GO:0050790 regulation of catalytic activity 2.47% (2/81) 3.67 0.010898 0.039784
GO:0009538 photosystem I reaction center 1.23% (1/81) 6.32 0.012424 0.042777
GO:0010119 regulation of stomatal movement 1.23% (1/81) 6.32 0.012424 0.042777
GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) 1.23% (1/81) 6.32 0.012424 0.042777
GO:0034641 cellular nitrogen compound metabolic process 12.35% (10/81) 1.18 0.012304 0.043859
GO:0065009 regulation of molecular function 2.47% (2/81) 3.58 0.012259 0.044218
GO:0000105 histidine biosynthetic process 1.23% (1/81) 6.06 0.01489 0.047996
GO:0048564 photosystem I assembly 1.23% (1/81) 6.06 0.01489 0.047996
GO:0006547 histidine metabolic process 1.23% (1/81) 6.06 0.01489 0.047996
GO:0004097 catechol oxidase activity 1.23% (1/81) 6.06 0.01489 0.047996
GO:0005525 GTP binding 3.7% (3/81) 2.56 0.0146 0.049154
GO:0032561 guanyl ribonucleotide binding 3.7% (3/81) 2.56 0.0146 0.049154
GO:0019001 guanyl nucleotide binding 3.7% (3/81) 2.52 0.015568 0.049653
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (81) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms