Coexpression cluster: Cluster_96 (Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0016192 vesicle-mediated transport 10.0% (9/90) 3.86 0.0 5e-06
GO:0032991 protein-containing complex 17.78% (16/90) 2.34 0.0 1.7e-05
GO:0016050 vesicle organization 3.33% (3/90) 6.62 3e-06 0.000244
GO:0000145 exocyst 4.44% (4/90) 5.32 3e-06 0.000277
GO:0005575 cellular_component 27.78% (25/90) 1.43 3e-06 0.000357
GO:0006901 vesicle coating 2.22% (2/90) 8.49 8e-06 0.000396
GO:0048208 COPII vesicle coating 2.22% (2/90) 8.49 8e-06 0.000396
GO:0099023 vesicle tethering complex 4.44% (4/90) 4.82 1.3e-05 0.000507
GO:0005634 nucleus 8.89% (8/90) 2.91 1.2e-05 0.000533
GO:0048193 Golgi vesicle transport 4.44% (4/90) 4.49 3.1e-05 0.001128
GO:0043231 intracellular membrane-bounded organelle 8.89% (8/90) 2.5 9e-05 0.002725
GO:0043227 membrane-bounded organelle 8.89% (8/90) 2.5 9e-05 0.002725
GO:0006887 exocytosis 3.33% (3/90) 4.95 0.000127 0.003549
GO:0032940 secretion by cell 3.33% (3/90) 4.91 0.000138 0.003588
GO:0009987 cellular process 36.67% (33/90) 0.88 0.000166 0.00402
GO:0046903 secretion 3.33% (3/90) 4.72 0.000204 0.00464
GO:0051641 cellular localization 6.67% (6/90) 2.74 0.000292 0.00625
GO:0030127 COPII vesicle coat 2.22% (2/90) 6.17 0.000338 0.006828
GO:0005488 binding 48.89% (44/90) 0.64 0.000416 0.007973
GO:0070727 cellular macromolecule localization 5.56% (5/90) 2.93 0.000529 0.008029
GO:0033036 macromolecule localization 5.56% (5/90) 2.93 0.000529 0.008029
GO:0008104 protein localization 5.56% (5/90) 2.93 0.000529 0.008029
GO:0140513 nuclear protein-containing complex 5.56% (5/90) 2.9 0.000582 0.008145
GO:0043687 post-translational protein modification 6.67% (6/90) 2.55 0.00058 0.008446
GO:0045184 establishment of protein localization 5.56% (5/90) 2.96 0.000471 0.008576
GO:0006996 organelle organization 5.56% (5/90) 2.93 0.000519 0.009002
GO:0070603 SWI/SNF superfamily-type complex 2.22% (2/90) 5.59 0.000781 0.010525
GO:1904949 ATPase complex 2.22% (2/90) 5.41 0.001008 0.013098
GO:0043169 cation binding 14.44% (13/90) 1.39 0.001289 0.013803
GO:0006914 autophagy 2.22% (2/90) 5.25 0.001262 0.013924
GO:0061919 process utilizing autophagic mechanism 2.22% (2/90) 5.25 0.001262 0.013924
GO:0016071 mRNA metabolic process 4.44% (4/90) 3.14 0.001148 0.013925
GO:0043167 ion binding 26.67% (24/90) 0.93 0.001122 0.014077
GO:0003924 GTPase activity 4.44% (4/90) 3.1 0.001254 0.014729
GO:0017111 ribonucleoside triphosphate phosphatase activity 6.67% (6/90) 2.3 0.001436 0.014932
GO:0008270 zinc ion binding 7.78% (7/90) 2.01 0.001792 0.017628
GO:0016462 pyrophosphatase activity 6.67% (6/90) 2.21 0.001917 0.017895
GO:0140352 export from cell 3.33% (3/90) 3.65 0.00179 0.018094
GO:0070647 protein modification by small protein conjugation or removal 5.56% (5/90) 2.51 0.001901 0.018206
GO:0019001 guanyl nucleotide binding 4.44% (4/90) 2.79 0.002777 0.019069
GO:0015031 protein transport 4.44% (4/90) 2.79 0.002777 0.019069
GO:1902494 catalytic complex 5.56% (5/90) 2.46 0.002205 0.019108
GO:0046872 metal ion binding 13.33% (12/90) 1.32 0.002962 0.019254
GO:0030120 vesicle coat 2.22% (2/90) 4.64 0.002944 0.019481
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport 2.22% (2/90) 4.64 0.002944 0.019481
GO:0016817 hydrolase activity, acting on acid anhydrides 6.67% (6/90) 2.17 0.0022 0.019529
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 6.67% (6/90) 2.18 0.002154 0.019605
GO:0016251 RNA polymerase II general transcription initiation factor activity 1.11% (1/90) 8.49 0.002774 0.019802
GO:0016556 mRNA modification 1.11% (1/90) 8.49 0.002774 0.019802
GO:0030906 retromer, cargo-selective complex 1.11% (1/90) 8.49 0.002774 0.019802
GO:0034450 ubiquitin-ubiquitin ligase activity 1.11% (1/90) 8.49 0.002774 0.019802
GO:0006893 Golgi to plasma membrane transport 1.11% (1/90) 8.49 0.002774 0.019802
GO:0071108 protein K48-linked deubiquitination 1.11% (1/90) 8.49 0.002774 0.019802
GO:0080009 mRNA methylation 1.11% (1/90) 8.49 0.002774 0.019802
GO:0051668 localization within membrane 2.22% (2/90) 4.59 0.003148 0.020104
GO:0005525 GTP binding 4.44% (4/90) 2.82 0.002545 0.021054
GO:0032561 guanyl ribonucleotide binding 4.44% (4/90) 2.82 0.002545 0.021054
GO:0016791 phosphatase activity 4.44% (4/90) 2.64 0.004029 0.024044
GO:0051234 establishment of localization 11.11% (10/90) 1.43 0.004 0.024268
GO:0043229 intracellular organelle 8.89% (8/90) 1.66 0.003935 0.024275
GO:0043226 organelle 8.89% (8/90) 1.66 0.003935 0.024275
GO:0016787 hydrolase activity 15.56% (14/90) 1.13 0.004423 0.024391
GO:0008150 biological_process 46.67% (42/90) 0.51 0.004378 0.024516
GO:0051179 localization 11.11% (10/90) 1.41 0.004346 0.02472
GO:0046907 intracellular transport 4.44% (4/90) 2.62 0.004217 0.024756
GO:0051649 establishment of localization in cell 4.44% (4/90) 2.6 0.004345 0.025104
GO:0016043 cellular component organization 6.67% (6/90) 1.9 0.005587 0.026759
GO:0004534 5'-3' RNA exonuclease activity 1.11% (1/90) 7.49 0.005541 0.026894
GO:0098876 vesicle-mediated transport to the plasma membrane 1.11% (1/90) 7.49 0.005541 0.026894
GO:0006892 post-Golgi vesicle-mediated transport 1.11% (1/90) 7.49 0.005541 0.026894
GO:1990380 K48-linked deubiquitinase activity 1.11% (1/90) 7.49 0.005541 0.026894
GO:0043484 regulation of RNA splicing 1.11% (1/90) 7.49 0.005541 0.026894
GO:0000381 regulation of alternative mRNA splicing, via spliceosome 1.11% (1/90) 7.49 0.005541 0.026894
GO:0140223 general transcription initiation factor activity 1.11% (1/90) 7.49 0.005541 0.026894
GO:0048024 regulation of mRNA splicing, via spliceosome 1.11% (1/90) 7.49 0.005541 0.026894
GO:0016070 RNA metabolic process 7.78% (7/90) 1.74 0.005106 0.027741
GO:0006397 mRNA processing 3.33% (3/90) 3.02 0.006104 0.028857
GO:0030117 membrane coat 2.22% (2/90) 4.03 0.006676 0.031155
GO:0140658 ATP-dependent chromatin remodeler activity 2.22% (2/90) 4.0 0.006974 0.031732
GO:0042578 phosphoric ester hydrolase activity 4.44% (4/90) 2.41 0.006941 0.031983
GO:0031213 RSF complex 1.11% (1/90) 6.91 0.008301 0.034334
GO:0016593 Cdc73/Paf1 complex 1.11% (1/90) 6.91 0.008301 0.034334
GO:0031087 deadenylation-independent decapping of nuclear-transcribed mRNA 1.11% (1/90) 6.91 0.008301 0.034334
GO:0031491 nucleosome binding 1.11% (1/90) 6.91 0.008301 0.034334
GO:0008352 katanin complex 1.11% (1/90) 6.91 0.008301 0.034334
GO:0031010 ISWI-type complex 1.11% (1/90) 6.91 0.008301 0.034334
GO:0004843 cysteine-type deubiquitinase activity 2.22% (2/90) 3.85 0.008552 0.034979
GO:0070646 protein modification by small protein removal 2.22% (2/90) 3.82 0.008886 0.035937
GO:0016579 protein deubiquitination 2.22% (2/90) 3.88 0.008225 0.036512
GO:0006886 intracellular protein transport 3.33% (3/90) 2.87 0.008184 0.036777
GO:0071840 cellular component organization or biogenesis 6.67% (6/90) 1.73 0.009729 0.038917
GO:0071705 nitrogen compound transport 4.44% (4/90) 2.21 0.01111 0.04004
GO:0035145 exon-exon junction complex 1.11% (1/90) 6.49 0.011052 0.04023
GO:0090114 COPII-coated vesicle budding 1.11% (1/90) 6.49 0.011052 0.04023
GO:0007030 Golgi organization 1.11% (1/90) 6.49 0.011052 0.04023
GO:0051013 microtubule severing 1.11% (1/90) 6.49 0.011052 0.04023
GO:0006900 vesicle budding from membrane 1.11% (1/90) 6.49 0.011052 0.04023
GO:0006741 NADP biosynthetic process 1.11% (1/90) 6.49 0.011052 0.04023
GO:0006891 intra-Golgi vesicle-mediated transport 1.11% (1/90) 6.49 0.011052 0.04023
GO:0006139 nucleobase-containing compound metabolic process 10.0% (9/90) 1.31 0.010219 0.040431
GO:0006810 transport 10.0% (9/90) 1.3 0.010855 0.042487
GO:0030433 ubiquitin-dependent ERAD pathway 1.11% (1/90) 6.17 0.013796 0.044441
GO:0036503 ERAD pathway 1.11% (1/90) 6.17 0.013796 0.044441
GO:0050684 regulation of mRNA processing 1.11% (1/90) 6.17 0.013796 0.044441
GO:0008409 5'-3' exonuclease activity 1.11% (1/90) 6.17 0.013796 0.044441
GO:0006354 DNA-templated transcription elongation 1.11% (1/90) 6.17 0.013796 0.044441
GO:1903311 regulation of mRNA metabolic process 1.11% (1/90) 6.17 0.013796 0.044441
GO:0046695 SLIK (SAGA-like) complex 1.11% (1/90) 6.17 0.013796 0.044441
GO:0030173 obsolete integral component of Golgi membrane 1.11% (1/90) 6.17 0.013796 0.044441
GO:0010243 response to organonitrogen compound 1.11% (1/90) 6.17 0.013796 0.044441
GO:0006368 transcription elongation by RNA polymerase II 1.11% (1/90) 6.17 0.013796 0.044441
GO:0101005 deubiquitinase activity 2.22% (2/90) 3.54 0.012922 0.046113
GO:0019783 ubiquitin-like protein peptidase activity 2.22% (2/90) 3.49 0.013727 0.04851
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (90) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms