Coexpression cluster: Cluster_298 (Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0043604 amide biosynthetic process 14.81% (8/54) 3.69 0.0 1e-05
GO:0003735 structural constituent of ribosome 14.81% (8/54) 3.79 0.0 1e-05
GO:0043043 peptide biosynthetic process 14.81% (8/54) 3.79 0.0 1e-05
GO:0006518 peptide metabolic process 14.81% (8/54) 3.71 0.0 1.1e-05
GO:0005198 structural molecule activity 14.81% (8/54) 3.59 0.0 1.5e-05
GO:0043603 amide metabolic process 14.81% (8/54) 3.55 0.0 1.5e-05
GO:0006412 translation 14.81% (8/54) 3.82 0.0 2.6e-05
GO:0005840 ribosome 12.96% (7/54) 3.76 1e-06 2.9e-05
GO:0009059 macromolecule biosynthetic process 16.67% (9/54) 3.07 1e-06 3.4e-05
GO:0043228 non-membrane-bounded organelle 12.96% (7/54) 3.38 5e-06 0.000112
GO:0043232 intracellular non-membrane-bounded organelle 12.96% (7/54) 3.38 5e-06 0.000112
GO:0044249 cellular biosynthetic process 20.37% (11/54) 2.44 4e-06 0.000122
GO:0044271 cellular nitrogen compound biosynthetic process 16.67% (9/54) 2.77 6e-06 0.000129
GO:1901576 organic substance biosynthetic process 20.37% (11/54) 2.34 9e-06 0.000171
GO:0003676 nucleic acid binding 27.78% (15/54) 1.85 9e-06 0.000176
GO:0009058 biosynthetic process 20.37% (11/54) 2.23 1.7e-05 0.00029
GO:1901566 organonitrogen compound biosynthetic process 14.81% (8/54) 2.79 1.9e-05 0.000311
GO:0034641 cellular nitrogen compound metabolic process 22.22% (12/54) 2.03 2.6e-05 0.000409
GO:0019843 rRNA binding 5.56% (3/54) 5.65 3e-05 0.000443
GO:0043226 organelle 14.81% (8/54) 2.39 0.000128 0.001715
GO:0043229 intracellular organelle 14.81% (8/54) 2.39 0.000128 0.001715
GO:0003723 RNA binding 12.96% (7/54) 2.53 0.000201 0.002563
GO:0005575 cellular_component 25.93% (14/54) 1.33 0.000921 0.011248
GO:0097159 organic cyclic compound binding 35.19% (19/54) 0.98 0.001701 0.018379
GO:0016632 oxidoreductase activity, acting on the CH-CH group of donors, cytochrome as acceptor 1.85% (1/54) 9.23 0.001665 0.018711
GO:0016633 galactonolactone dehydrogenase activity 1.85% (1/54) 9.23 0.001665 0.018711
GO:0032787 monocarboxylic acid metabolic process 5.56% (3/54) 3.46 0.002605 0.027109
GO:0044237 cellular metabolic process 27.78% (15/54) 1.1 0.002869 0.028788
GO:0001055 RNA polymerase II activity 1.85% (1/54) 8.23 0.003327 0.032234
GO:0051444 negative regulation of ubiquitin-protein transferase activity 1.85% (1/54) 7.65 0.004986 0.037865
GO:0017057 6-phosphogluconolactonase activity 1.85% (1/54) 7.65 0.004986 0.037865
GO:1903321 negative regulation of protein modification by small protein conjugation or removal 1.85% (1/54) 7.65 0.004986 0.037865
GO:0031397 negative regulation of protein ubiquitination 1.85% (1/54) 7.65 0.004986 0.037865
GO:1901874 negative regulation of post-translational protein modification 1.85% (1/54) 7.65 0.004986 0.037865
GO:1904667 negative regulation of ubiquitin protein ligase activity 1.85% (1/54) 7.65 0.004986 0.037865
GO:0044238 primary metabolic process 31.48% (17/54) 0.95 0.004301 0.040287
GO:0072330 monocarboxylic acid biosynthetic process 3.7% (2/54) 4.14 0.005775 0.042706
GO:0006633 fatty acid biosynthetic process 3.7% (2/54) 4.25 0.004978 0.045119
GO:0046496 nicotinamide nucleotide metabolic process 3.7% (2/54) 4.02 0.006804 0.045523
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific 3.7% (2/54) 4.02 0.006804 0.045523
GO:0019362 pyridine nucleotide metabolic process 3.7% (2/54) 4.0 0.006983 0.045634
GO:0051192 prosthetic group binding 1.85% (1/54) 6.91 0.008296 0.046624
GO:0008097 5S rRNA binding 1.85% (1/54) 6.91 0.008296 0.046624
GO:0000036 acyl carrier activity 1.85% (1/54) 6.91 0.008296 0.046624
GO:0140414 phosphopantetheine-dependent carrier activity 1.85% (1/54) 6.91 0.008296 0.046624
GO:0044620 ACP phosphopantetheine attachment site binding 1.85% (1/54) 6.91 0.008296 0.046624
GO:0005665 RNA polymerase II, core complex 1.85% (1/54) 7.23 0.006642 0.046663
GO:0110165 cellular anatomical entity 18.52% (10/54) 1.3 0.006521 0.046987
GO:0005488 binding 48.15% (26/54) 0.61 0.007618 0.048649
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (54) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms