Coexpression cluster: Cluster_58 (Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0140101 catalytic activity, acting on a tRNA 14.29% (10/70) 5.67 0.0 0.0
GO:0140098 catalytic activity, acting on RNA 17.14% (12/70) 4.15 0.0 0.0
GO:0006399 tRNA metabolic process 12.86% (9/70) 5.11 0.0 0.0
GO:0016875 ligase activity, forming carbon-oxygen bonds 10.0% (7/70) 5.88 0.0 0.0
GO:0043039 tRNA aminoacylation 10.0% (7/70) 5.88 0.0 0.0
GO:0043038 amino acid activation 10.0% (7/70) 5.88 0.0 0.0
GO:0006418 tRNA aminoacylation for protein translation 10.0% (7/70) 5.88 0.0 0.0
GO:0004812 aminoacyl-tRNA ligase activity 10.0% (7/70) 5.88 0.0 0.0
GO:0034660 ncRNA metabolic process 12.86% (9/70) 4.4 0.0 0.0
GO:0140640 catalytic activity, acting on a nucleic acid 17.14% (12/70) 3.45 0.0 0.0
GO:0016874 ligase activity 11.43% (8/70) 4.57 0.0 0.0
GO:0046483 heterocycle metabolic process 22.86% (16/70) 2.37 0.0 2e-06
GO:0016070 RNA metabolic process 17.14% (12/70) 2.88 0.0 2e-06
GO:1901360 organic cyclic compound metabolic process 22.86% (16/70) 2.31 0.0 2e-06
GO:0090304 nucleic acid metabolic process 18.57% (13/70) 2.53 0.0 8e-06
GO:0006725 cellular aromatic compound metabolic process 21.43% (15/70) 2.24 0.0 1e-05
GO:0006082 organic acid metabolic process 12.86% (9/70) 3.19 1e-06 1.2e-05
GO:0043436 oxoacid metabolic process 12.86% (9/70) 3.2 1e-06 1.2e-05
GO:0019752 carboxylic acid metabolic process 12.86% (9/70) 3.2 1e-06 1.2e-05
GO:0006520 amino acid metabolic process 10.0% (7/70) 3.65 1e-06 2.7e-05
GO:0006139 nucleobase-containing compound metabolic process 18.57% (13/70) 2.21 4e-06 6.6e-05
GO:0034641 cellular nitrogen compound metabolic process 21.43% (15/70) 1.98 4e-06 7.2e-05
GO:0044281 small molecule metabolic process 12.86% (9/70) 2.49 3e-05 0.000479
GO:0008173 RNA methyltransferase activity 4.29% (3/70) 5.19 7.7e-05 0.001179
GO:0003824 catalytic activity 44.29% (31/70) 0.89 0.00014 0.002054
GO:0016741 transferase activity, transferring one-carbon groups 7.14% (5/70) 3.27 0.000177 0.00251
GO:0044237 cellular metabolic process 28.57% (20/70) 1.14 0.00042 0.005722
GO:0003674 molecular_function 68.57% (48/70) 0.5 0.000552 0.00725
GO:0008152 metabolic process 35.71% (25/70) 0.91 0.000751 0.009533
GO:0006396 RNA processing 7.14% (5/70) 2.67 0.001153 0.014141
GO:0043170 macromolecule metabolic process 25.71% (18/70) 1.07 0.001527 0.017031
GO:0009987 cellular process 35.71% (25/70) 0.84 0.001507 0.017336
GO:0008168 methyltransferase activity 5.71% (4/70) 3.03 0.001492 0.017708
GO:0006778 porphyrin-containing compound metabolic process 2.86% (2/70) 5.05 0.001673 0.01811
GO:0046408 chlorophyll synthetase activity 1.43% (1/70) 8.86 0.002158 0.019368
GO:0004479 methionyl-tRNA formyltransferase activity 1.43% (1/70) 8.86 0.002158 0.019368
GO:0071951 conversion of methionyl-tRNA to N-formyl-methionyl-tRNA 1.43% (1/70) 8.86 0.002158 0.019368
GO:0030956 glutamyl-tRNA(Gln) amidotransferase complex 1.43% (1/70) 8.86 0.002158 0.019368
GO:0050567 glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity 1.43% (1/70) 8.86 0.002158 0.019368
GO:0042440 pigment metabolic process 2.86% (2/70) 4.9 0.00205 0.020953
GO:0017076 purine nucleotide binding 20.0% (14/70) 1.24 0.002028 0.021324
GO:0016672 oxidoreductase activity, acting on a sulfur group of donors, quinone or similar compound as acceptor 1.43% (1/70) 7.86 0.004311 0.022665
GO:0004392 heme oxygenase (decyclizing) activity 1.43% (1/70) 7.86 0.004311 0.022665
GO:0004821 histidine-tRNA ligase activity 1.43% (1/70) 7.86 0.004311 0.022665
GO:0006426 glycyl-tRNA aminoacylation 1.43% (1/70) 7.86 0.004311 0.022665
GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen 1.43% (1/70) 7.86 0.004311 0.022665
GO:0006427 histidyl-tRNA aminoacylation 1.43% (1/70) 7.86 0.004311 0.022665
GO:0004820 glycine-tRNA ligase activity 1.43% (1/70) 7.86 0.004311 0.022665
GO:0019852 L-ascorbic acid metabolic process 1.43% (1/70) 7.86 0.004311 0.022665
GO:0004822 isoleucine-tRNA ligase activity 1.43% (1/70) 7.86 0.004311 0.022665
GO:0033355 ascorbate glutathione cycle 1.43% (1/70) 7.86 0.004311 0.022665
GO:0006428 isoleucyl-tRNA aminoacylation 1.43% (1/70) 7.86 0.004311 0.022665
GO:0045174 glutathione dehydrogenase (ascorbate) activity 1.43% (1/70) 7.86 0.004311 0.022665
GO:0006788 heme oxidation 1.43% (1/70) 7.86 0.004311 0.022665
GO:0006436 tryptophanyl-tRNA aminoacylation 1.43% (1/70) 7.86 0.004311 0.022665
GO:0051053 negative regulation of DNA metabolic process 1.43% (1/70) 7.86 0.004311 0.022665
GO:0004830 tryptophan-tRNA ligase activity 1.43% (1/70) 7.86 0.004311 0.022665
GO:0004816 asparagine-tRNA ligase activity 1.43% (1/70) 7.86 0.004311 0.022665
GO:0000018 regulation of DNA recombination 1.43% (1/70) 7.86 0.004311 0.022665
GO:0045910 negative regulation of DNA recombination 1.43% (1/70) 7.86 0.004311 0.022665
GO:0006421 asparaginyl-tRNA aminoacylation 1.43% (1/70) 7.86 0.004311 0.022665
GO:0008150 biological_process 48.57% (34/70) 0.56 0.004524 0.023122
GO:0097367 carbohydrate derivative binding 18.57% (13/70) 1.17 0.004513 0.023393
GO:1901363 heterocyclic compound binding 20.0% (14/70) 1.1 0.00474 0.023894
GO:0033013 tetrapyrrole metabolic process 2.86% (2/70) 4.69 0.002758 0.024164
GO:0030554 adenyl nucleotide binding 18.57% (13/70) 1.24 0.002892 0.02475
GO:0036094 small molecule binding 20.0% (14/70) 1.09 0.005098 0.025352
GO:0044238 primary metabolic process 30.0% (21/70) 0.88 0.0031 0.025924
GO:0032559 adenyl ribonucleotide binding 17.14% (12/70) 1.2 0.005327 0.026137
GO:0000166 nucleotide binding 20.0% (14/70) 1.16 0.003347 0.026778
GO:1901265 nucleoside phosphate binding 20.0% (14/70) 1.16 0.003347 0.026778
GO:0006807 nitrogen compound metabolic process 25.71% (18/70) 0.9 0.005569 0.026964
GO:0006434 seryl-tRNA aminoacylation 1.43% (1/70) 7.27 0.00646 0.027643
GO:0006430 lysyl-tRNA aminoacylation 1.43% (1/70) 7.27 0.00646 0.027643
GO:0008176 tRNA (guanine(46)-N7)-methyltransferase activity 1.43% (1/70) 7.27 0.00646 0.027643
GO:0004618 phosphoglycerate kinase activity 1.43% (1/70) 7.27 0.00646 0.027643
GO:0009638 phototropism 1.43% (1/70) 7.27 0.00646 0.027643
GO:0019988 charged-tRNA amino acid modification 1.43% (1/70) 7.27 0.00646 0.027643
GO:1901334 lactone metabolic process 1.43% (1/70) 7.27 0.00646 0.027643
GO:0004828 serine-tRNA ligase activity 1.43% (1/70) 7.27 0.00646 0.027643
GO:0004824 lysine-tRNA ligase activity 1.43% (1/70) 7.27 0.00646 0.027643
GO:0110102 ribulose bisphosphate carboxylase complex assembly 1.43% (1/70) 7.27 0.00646 0.027643
GO:0006400 tRNA modification 2.86% (2/70) 4.46 0.003738 0.028071
GO:0043167 ion binding 25.71% (18/70) 0.88 0.006673 0.028228
GO:0032555 purine ribonucleotide binding 18.57% (13/70) 1.2 0.003689 0.02828
GO:0071704 organic substance metabolic process 31.43% (22/70) 0.83 0.003664 0.028687
GO:0032553 ribonucleotide binding 18.57% (13/70) 1.18 0.004104 0.030203
GO:0046434 organophosphate catabolic process 2.86% (2/70) 3.97 0.007254 0.030337
GO:0003844 1,4-alpha-glucan branching enzyme activity 1.43% (1/70) 6.86 0.008604 0.034794
GO:0016423 tRNA (guanine) methyltransferase activity 1.43% (1/70) 6.86 0.008604 0.034794
GO:0044183 protein folding chaperone 1.43% (1/70) 6.86 0.008604 0.034794
GO:0008033 tRNA processing 2.86% (2/70) 3.81 0.009007 0.03564
GO:0005737 cytoplasm 4.29% (3/70) 2.82 0.00896 0.03584
GO:0005975 carbohydrate metabolic process 7.14% (5/70) 1.96 0.009288 0.036362
GO:0043168 anion binding 18.57% (13/70) 1.04 0.009462 0.036654
GO:0035639 purine ribonucleoside triphosphate binding 15.71% (11/70) 1.14 0.01034 0.039637
GO:0046168 glycerol-3-phosphate catabolic process 1.43% (1/70) 6.53 0.010744 0.040759
GO:1901136 carbohydrate derivative catabolic process 2.86% (2/70) 3.63 0.011508 0.043213
GO:0009331 glycerol-3-phosphate dehydrogenase complex 1.43% (1/70) 6.27 0.012879 0.047872
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (70) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms