Coexpression cluster: Cluster_363 (Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0006139 nucleobase-containing compound metabolic process 26.32% (15/57) 3.01 0.0 0.0
GO:1901360 organic cyclic compound metabolic process 26.32% (15/57) 2.81 0.0 0.0
GO:0090304 nucleic acid metabolic process 22.81% (13/57) 3.14 0.0 0.0
GO:0006725 cellular aromatic compound metabolic process 26.32% (15/57) 2.84 0.0 0.0
GO:0046483 heterocycle metabolic process 26.32% (15/57) 2.88 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 26.32% (15/57) 2.56 0.0 1e-06
GO:0006974 DNA damage response 12.28% (7/57) 4.43 0.0 2e-06
GO:0033554 cellular response to stress 12.28% (7/57) 4.26 0.0 3e-06
GO:0051716 cellular response to stimulus 12.28% (7/57) 4.2 0.0 4e-06
GO:0009987 cellular process 42.11% (24/57) 1.32 6e-06 0.000189
GO:0006259 DNA metabolic process 10.53% (6/57) 3.67 8e-06 0.000224
GO:0006807 nitrogen compound metabolic process 35.09% (20/57) 1.47 1.1e-05 0.000252
GO:0042770 signal transduction in response to DNA damage 3.51% (2/57) 8.53 1.1e-05 0.000256
GO:0000077 DNA damage checkpoint signaling 3.51% (2/57) 8.53 1.1e-05 0.000256
GO:0006281 DNA repair 8.77% (5/57) 4.0 1.6e-05 0.00033
GO:0031570 DNA integrity checkpoint signaling 3.51% (2/57) 7.95 2.7e-05 0.000519
GO:0003676 nucleic acid binding 22.81% (13/57) 1.81 5.9e-05 0.001085
GO:0016070 RNA metabolic process 12.28% (7/57) 2.79 6.5e-05 0.00112
GO:0044237 cellular metabolic process 29.82% (17/57) 1.43 9.8e-05 0.001603
GO:0003677 DNA binding 15.79% (9/57) 2.25 0.000105 0.001623
GO:0010948 negative regulation of cell cycle process 3.51% (2/57) 6.83 0.000139 0.001718
GO:0000075 cell cycle checkpoint signaling 3.51% (2/57) 6.83 0.000139 0.001718
GO:1901988 negative regulation of cell cycle phase transition 3.51% (2/57) 6.83 0.000139 0.001718
GO:0043170 macromolecule metabolic process 29.82% (17/57) 1.4 0.000127 0.001795
GO:0005488 binding 50.88% (29/57) 0.9 0.000125 0.001851
GO:1901987 regulation of cell cycle phase transition 3.51% (2/57) 6.36 0.000271 0.003226
GO:0045786 negative regulation of cell cycle 3.51% (2/57) 6.28 0.000302 0.003469
GO:0006302 double-strand break repair 3.51% (2/57) 6.21 0.000335 0.003714
GO:0044238 primary metabolic process 33.33% (19/57) 1.16 0.000396 0.004229
GO:0008152 metabolic process 35.09% (20/57) 1.04 0.000804 0.008304
GO:0071704 organic substance metabolic process 33.33% (19/57) 1.06 0.001001 0.009696
GO:0006950 response to stress 12.28% (7/57) 2.15 0.000974 0.009736
GO:0019136 deoxynucleoside kinase activity 1.75% (1/57) 9.53 0.001351 0.010471
GO:0000380 alternative mRNA splicing, via spliceosome 1.75% (1/57) 9.53 0.001351 0.010471
GO:0030289 protein phosphatase 4 complex 1.75% (1/57) 9.53 0.001351 0.010471
GO:0004797 thymidine kinase activity 1.75% (1/57) 9.53 0.001351 0.010471
GO:0000012 single strand break repair 1.75% (1/57) 9.53 0.001351 0.010471
GO:0000737 obsolete DNA catabolic process, endonucleolytic 1.75% (1/57) 9.53 0.001351 0.010471
GO:0034508 centromere complex assembly 1.75% (1/57) 9.53 0.001351 0.010471
GO:0034654 nucleobase-containing compound biosynthetic process 7.02% (4/57) 3.09 0.001274 0.011965
GO:0043226 organelle 10.53% (6/57) 2.22 0.001762 0.013004
GO:0043229 intracellular organelle 10.53% (6/57) 2.22 0.001762 0.013004
GO:0005634 nucleus 7.02% (4/57) 2.94 0.001859 0.0131
GO:0140640 catalytic activity, acting on a nucleic acid 8.77% (5/57) 2.51 0.001849 0.013332
GO:0046049 UMP metabolic process 1.75% (1/57) 8.53 0.0027 0.013723
GO:0044205 'de novo' UMP biosynthetic process 1.75% (1/57) 8.53 0.0027 0.013723
GO:0008821 crossover junction DNA endonuclease activity 1.75% (1/57) 8.53 0.0027 0.013723
GO:0006222 UMP biosynthetic process 1.75% (1/57) 8.53 0.0027 0.013723
GO:0004588 orotate phosphoribosyltransferase activity 1.75% (1/57) 8.53 0.0027 0.013723
GO:0016889 DNA endonuclease activity, producing 3'-phosphomonoesters 1.75% (1/57) 8.53 0.0027 0.013723
GO:0009173 pyrimidine ribonucleoside monophosphate metabolic process 1.75% (1/57) 8.53 0.0027 0.013723
GO:0030896 checkpoint clamp complex 1.75% (1/57) 8.53 0.0027 0.013723
GO:0009174 pyrimidine ribonucleoside monophosphate biosynthetic process 1.75% (1/57) 8.53 0.0027 0.013723
GO:0004590 orotidine-5'-phosphate decarboxylase activity 1.75% (1/57) 8.53 0.0027 0.013723
GO:0008150 biological_process 47.37% (27/57) 0.71 0.002366 0.014669
GO:0097159 organic cyclic compound binding 31.58% (18/57) 1.0 0.002158 0.014864
GO:0050896 response to stimulus 12.28% (7/57) 1.92 0.002366 0.014967
GO:0018130 heterocycle biosynthetic process 7.02% (4/57) 2.74 0.003054 0.015028
GO:0019438 aromatic compound biosynthetic process 7.02% (4/57) 2.74 0.003029 0.015147
GO:0016570 histone modification 3.51% (2/57) 4.8 0.002364 0.01527
GO:0005575 cellular_component 21.05% (12/57) 1.34 0.002269 0.015294
GO:0032774 RNA biosynthetic process 5.26% (3/57) 3.52 0.002334 0.015392
GO:0140097 catalytic activity, acting on DNA 5.26% (3/57) 3.47 0.00258 0.015681
GO:0010564 regulation of cell cycle process 3.51% (2/57) 4.55 0.003322 0.016091
GO:0043933 protein-containing complex organization 5.26% (3/57) 3.32 0.003412 0.016272
GO:0009532 plastid stroma 1.75% (1/57) 7.95 0.004048 0.018186
GO:0009570 chloroplast stroma 1.75% (1/57) 7.95 0.004048 0.018186
GO:0006303 double-strand break repair via nonhomologous end joining 1.75% (1/57) 7.95 0.004048 0.018186
GO:0019206 nucleoside kinase activity 1.75% (1/57) 7.95 0.004048 0.018186
GO:1901362 organic cyclic compound biosynthetic process 7.02% (4/57) 2.6 0.004275 0.018931
GO:0071824 protein-DNA complex organization 3.51% (2/57) 4.19 0.005426 0.021293
GO:0000776 kinetochore 1.75% (1/57) 7.53 0.005393 0.021436
GO:0016149 translation release factor activity, codon specific 1.75% (1/57) 7.53 0.005393 0.021436
GO:0009143 nucleoside triphosphate catabolic process 1.75% (1/57) 7.53 0.005393 0.021436
GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters 1.75% (1/57) 7.53 0.005393 0.021436
GO:0016151 nickel cation binding 1.75% (1/57) 7.53 0.005393 0.021436
GO:0043231 intracellular membrane-bounded organelle 7.02% (4/57) 2.53 0.005168 0.021945
GO:0043227 membrane-bounded organelle 7.02% (4/57) 2.53 0.005168 0.021945
GO:0006260 DNA replication 3.51% (2/57) 4.25 0.005042 0.022016
GO:0009130 pyrimidine nucleoside monophosphate biosynthetic process 1.75% (1/57) 7.21 0.006737 0.024572
GO:0009129 pyrimidine nucleoside monophosphate metabolic process 1.75% (1/57) 7.21 0.006737 0.024572
GO:0016593 Cdc73/Paf1 complex 1.75% (1/57) 7.21 0.006737 0.024572
GO:0043087 regulation of GTPase activity 1.75% (1/57) 7.21 0.006737 0.024572
GO:0030176 obsolete integral component of endoplasmic reticulum membrane 1.75% (1/57) 7.21 0.006737 0.024572
GO:0051726 regulation of cell cycle 3.51% (2/57) 4.06 0.006513 0.025239
GO:0110165 cellular anatomical entity 15.79% (9/57) 1.36 0.00772 0.027827
GO:0008237 metallopeptidase activity 3.51% (2/57) 3.92 0.007844 0.027951
GO:0036297 interstrand cross-link repair 1.75% (1/57) 6.95 0.00808 0.028142
GO:0004520 DNA endonuclease activity 1.75% (1/57) 6.95 0.00808 0.028142
GO:0047429 nucleoside triphosphate diphosphatase activity 1.75% (1/57) 6.53 0.010758 0.035861
GO:0008023 transcription elongation factor complex 1.75% (1/57) 6.53 0.010758 0.035861
GO:0006368 transcription elongation by RNA polymerase II 1.75% (1/57) 6.53 0.010758 0.035861
GO:0006354 DNA-templated transcription elongation 1.75% (1/57) 6.53 0.010758 0.035861
GO:0004536 DNA nuclease activity 1.75% (1/57) 6.36 0.012095 0.039888
GO:0006396 RNA processing 5.26% (3/57) 2.64 0.012456 0.040645
GO:0006397 mRNA processing 3.51% (2/57) 3.54 0.012879 0.041589
GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process 1.75% (1/57) 6.21 0.01343 0.042483
GO:0071586 CAAX-box protein processing 1.75% (1/57) 6.21 0.01343 0.042483
GO:0004519 endonuclease activity 3.51% (2/57) 3.49 0.013858 0.043393
GO:0008079 translation termination factor activity 1.75% (1/57) 6.07 0.014763 0.044869
GO:0006415 translational termination 1.75% (1/57) 6.07 0.014763 0.044869
GO:0003747 translation release factor activity 1.75% (1/57) 6.07 0.014763 0.044869
GO:0003674 molecular_function 57.89% (33/57) 0.44 0.015062 0.045331
GO:0019856 pyrimidine nucleobase biosynthetic process 1.75% (1/57) 5.95 0.016095 0.047518
GO:0043687 post-translational protein modification 5.26% (3/57) 2.51 0.015979 0.047629
GO:0006206 pyrimidine nucleobase metabolic process 1.75% (1/57) 5.83 0.017425 0.048663
GO:0009218 pyrimidine ribonucleotide metabolic process 1.75% (1/57) 5.83 0.017425 0.048663
GO:0030880 RNA polymerase complex 1.75% (1/57) 5.83 0.017425 0.048663
GO:0009220 pyrimidine ribonucleotide biosynthetic process 1.75% (1/57) 5.83 0.017425 0.048663
GO:0005730 nucleolus 1.75% (1/57) 5.83 0.017425 0.048663
GO:0008094 ATP-dependent activity, acting on DNA 3.51% (2/57) 3.33 0.016979 0.049657
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (57) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms