Coexpression cluster: Cluster_56 (Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0032993 protein-DNA complex 12.71% (15/118) 6.43 0.0 0.0
GO:0000786 nucleosome 12.71% (15/118) 6.46 0.0 0.0
GO:0046982 protein heterodimerization activity 12.71% (15/118) 5.8 0.0 0.0
GO:0046983 protein dimerization activity 16.1% (19/118) 3.91 0.0 0.0
GO:0003677 DNA binding 23.73% (28/118) 2.83 0.0 0.0
GO:0003676 nucleic acid binding 26.27% (31/118) 2.01 0.0 0.0
GO:0032991 protein-containing complex 13.56% (16/118) 2.29 0.0 1e-05
GO:0050789 regulation of biological process 16.95% (20/118) 1.71 3e-06 0.000129
GO:0065007 biological regulation 16.95% (20/118) 1.68 4e-06 0.000166
GO:0097159 organic cyclic compound binding 32.2% (38/118) 1.03 7e-06 0.00026
GO:0032502 developmental process 5.08% (6/118) 3.5 1.6e-05 0.000575
GO:0005575 cellular_component 20.34% (24/118) 1.29 3.6e-05 0.001087
GO:0005515 protein binding 22.88% (27/118) 1.19 3.5e-05 0.001132
GO:0050794 regulation of cellular process 14.41% (17/118) 1.56 6e-05 0.001666
GO:0009263 deoxyribonucleotide biosynthetic process 1.69% (2/118) 6.9 0.000116 0.003003
GO:0080090 regulation of primary metabolic process 11.02% (13/118) 1.71 0.000181 0.003925
GO:0009262 deoxyribonucleotide metabolic process 1.69% (2/118) 6.67 0.000161 0.003934
GO:0051171 regulation of nitrogen compound metabolic process 11.02% (13/118) 1.71 0.000175 0.004016
GO:0019219 regulation of nucleobase-containing compound metabolic process 10.17% (12/118) 1.7 0.000332 0.005181
GO:0060255 regulation of macromolecule metabolic process 11.02% (13/118) 1.64 0.000293 0.005202
GO:0051252 regulation of RNA metabolic process 10.17% (12/118) 1.71 0.00031 0.005258
GO:0019222 regulation of metabolic process 11.02% (13/118) 1.62 0.000331 0.005378
GO:2001141 regulation of RNA biosynthetic process 10.17% (12/118) 1.72 0.000293 0.005449
GO:0006355 regulation of DNA-templated transcription 10.17% (12/118) 1.72 0.000293 0.005449
GO:0040008 regulation of growth 2.54% (3/118) 4.58 0.000278 0.005702
GO:0003674 molecular_function 58.47% (69/118) 0.45 0.000411 0.006162
GO:0031326 regulation of cellular biosynthetic process 10.17% (12/118) 1.59 0.000679 0.008831
GO:0009889 regulation of biosynthetic process 10.17% (12/118) 1.59 0.000679 0.008831
GO:0010556 regulation of macromolecule biosynthetic process 10.17% (12/118) 1.59 0.000671 0.009347
GO:0010468 regulation of gene expression 10.17% (12/118) 1.59 0.000659 0.009517
GO:0048869 cellular developmental process 1.69% (2/118) 5.48 0.000907 0.010722
GO:0009629 response to gravity 1.69% (2/118) 5.48 0.000907 0.010722
GO:0009630 gravitropism 1.69% (2/118) 5.48 0.000907 0.010722
GO:0031323 regulation of cellular metabolic process 10.17% (12/118) 1.52 0.001015 0.011643
GO:0005488 binding 40.68% (48/118) 0.58 0.00105 0.011702
GO:0003006 developmental process involved in reproduction 1.69% (2/118) 4.96 0.001888 0.020458
GO:0006244 pyrimidine nucleotide catabolic process 0.85% (1/118) 8.48 0.002797 0.020581
GO:0006226 dUMP biosynthetic process 0.85% (1/118) 8.48 0.002797 0.020581
GO:0048236 plant-type sporogenesis 0.85% (1/118) 8.48 0.002797 0.020581
GO:0004170 dUTP diphosphatase activity 0.85% (1/118) 8.48 0.002797 0.020581
GO:0043934 sporulation 0.85% (1/118) 8.48 0.002797 0.020581
GO:0034293 sexual sporulation 0.85% (1/118) 8.48 0.002797 0.020581
GO:0009149 pyrimidine nucleoside triphosphate catabolic process 0.85% (1/118) 8.48 0.002797 0.020581
GO:0009211 pyrimidine deoxyribonucleoside triphosphate metabolic process 0.85% (1/118) 8.48 0.002797 0.020581
GO:0009213 pyrimidine deoxyribonucleoside triphosphate catabolic process 0.85% (1/118) 8.48 0.002797 0.020581
GO:0009223 pyrimidine deoxyribonucleotide catabolic process 0.85% (1/118) 8.48 0.002797 0.020581
GO:0046078 dUMP metabolic process 0.85% (1/118) 8.48 0.002797 0.020581
GO:0046386 deoxyribose phosphate catabolic process 0.85% (1/118) 8.48 0.002797 0.020581
GO:0046080 dUTP metabolic process 0.85% (1/118) 8.48 0.002797 0.020581
GO:0046081 dUTP catabolic process 0.85% (1/118) 8.48 0.002797 0.020581
GO:0004175 endopeptidase activity 4.24% (5/118) 2.5 0.002005 0.021131
GO:0034654 nucleobase-containing compound biosynthetic process 4.24% (5/118) 2.36 0.003036 0.021923
GO:0003700 DNA-binding transcription factor activity 6.78% (8/118) 1.79 0.002361 0.024235
GO:0009606 tropism 1.69% (2/118) 4.48 0.003642 0.025363
GO:0140110 transcription regulator activity 6.78% (8/118) 1.68 0.003632 0.025753
GO:0005096 GTPase activator activity 1.69% (2/118) 4.67 0.002796 0.027958
GO:0070001 aspartic-type peptidase activity 2.54% (3/118) 3.2 0.004401 0.02959
GO:0004190 aspartic-type endopeptidase activity 2.54% (3/118) 3.2 0.004401 0.02959
GO:1901874 negative regulation of post-translational protein modification 0.85% (1/118) 7.48 0.005586 0.03404
GO:0031397 negative regulation of protein ubiquitination 0.85% (1/118) 7.48 0.005586 0.03404
GO:1904667 negative regulation of ubiquitin protein ligase activity 0.85% (1/118) 7.48 0.005586 0.03404
GO:0051444 negative regulation of ubiquitin-protein transferase activity 0.85% (1/118) 7.48 0.005586 0.03404
GO:1903321 negative regulation of protein modification by small protein conjugation or removal 0.85% (1/118) 7.48 0.005586 0.03404
GO:0009264 deoxyribonucleotide catabolic process 0.85% (1/118) 7.48 0.005586 0.03404
GO:0008047 enzyme activator activity 1.69% (2/118) 4.09 0.006208 0.037247
GO:0048830 adventitious root development 0.85% (1/118) 6.9 0.008368 0.044703
GO:0009177 pyrimidine deoxyribonucleoside monophosphate biosynthetic process 0.85% (1/118) 6.9 0.008368 0.044703
GO:0009176 pyrimidine deoxyribonucleoside monophosphate metabolic process 0.85% (1/118) 6.9 0.008368 0.044703
GO:0009162 deoxyribonucleoside monophosphate metabolic process 0.85% (1/118) 6.9 0.008368 0.044703
GO:0009157 deoxyribonucleoside monophosphate biosynthetic process 0.85% (1/118) 6.9 0.008368 0.044703
GO:0070192 chromosome organization involved in meiotic cell cycle 0.85% (1/118) 6.9 0.008368 0.044703
GO:0018130 heterocycle biosynthetic process 4.24% (5/118) 2.01 0.008292 0.048269
GO:0019438 aromatic compound biosynthetic process 4.24% (5/118) 2.02 0.008217 0.048553
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (118) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms