Coexpression cluster: Cluster_245 (Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0006396 RNA processing 8.07% (13/161) 3.26 0.0 1e-06
GO:0016070 RNA metabolic process 10.56% (17/161) 2.58 0.0 1e-06
GO:0006725 cellular aromatic compound metabolic process 13.66% (22/161) 1.9 0.0 1.1e-05
GO:0046483 heterocycle metabolic process 13.66% (22/161) 1.94 0.0 1.1e-05
GO:1901360 organic cyclic compound metabolic process 13.66% (22/161) 1.87 0.0 1.2e-05
GO:0004176 ATP-dependent peptidase activity 3.11% (5/161) 5.4 0.0 1.3e-05
GO:0008033 tRNA processing 3.73% (6/161) 4.53 0.0 1.6e-05
GO:0006139 nucleobase-containing compound metabolic process 12.42% (20/161) 1.92 0.0 2e-05
GO:0006400 tRNA modification 3.11% (5/161) 4.96 1e-06 2.8e-05
GO:0006399 tRNA metabolic process 4.35% (7/161) 3.81 1e-06 3.4e-05
GO:0090304 nucleic acid metabolic process 10.56% (17/161) 2.03 1e-06 3.9e-05
GO:0034470 ncRNA processing 4.35% (7/161) 3.75 1e-06 4e-05
GO:0034660 ncRNA metabolic process 4.97% (8/161) 3.35 1e-06 4.6e-05
GO:0009536 plastid 2.48% (4/161) 5.39 2e-06 7.6e-05
GO:0034641 cellular nitrogen compound metabolic process 13.66% (22/161) 1.62 3e-06 8.8e-05
GO:0003674 molecular_function 60.25% (97/161) 0.5 6e-06 0.000155
GO:0003723 RNA binding 8.07% (13/161) 2.12 1.1e-05 0.000273
GO:0006807 nitrogen compound metabolic process 24.84% (40/161) 0.98 1.7e-05 0.000419
GO:0009658 chloroplast organization 1.86% (3/161) 5.81 1.9e-05 0.000424
GO:0009657 plastid organization 1.86% (3/161) 5.81 1.9e-05 0.000424
GO:0009451 RNA modification 3.73% (6/161) 3.32 3.3e-05 0.000694
GO:0008237 metallopeptidase activity 3.11% (5/161) 3.74 3.9e-05 0.000778
GO:0070525 tRNA threonylcarbamoyladenosine metabolic process 1.24% (2/161) 7.45 4.3e-05 0.000796
GO:0002949 tRNA threonylcarbamoyladenosine modification 1.24% (2/161) 7.45 4.3e-05 0.000796
GO:0044238 primary metabolic process 26.71% (43/161) 0.84 7.2e-05 0.001229
GO:0044237 cellular metabolic process 21.74% (35/161) 0.97 7.1e-05 0.001244
GO:0008152 metabolic process 29.19% (47/161) 0.77 9.6e-05 0.001564
GO:0009507 chloroplast 1.86% (3/161) 5.03 0.000104 0.001639
GO:0006353 DNA-templated transcription termination 1.24% (2/161) 6.71 0.000144 0.002184
GO:0032561 guanyl ribonucleotide binding 3.73% (6/161) 2.92 0.000156 0.002219
GO:0005525 GTP binding 3.73% (6/161) 2.92 0.000156 0.002219
GO:0071704 organic substance metabolic process 27.33% (44/161) 0.77 0.000188 0.002444
GO:0008173 RNA methyltransferase activity 1.86% (3/161) 4.76 0.000185 0.002476
GO:0019001 guanyl nucleotide binding 3.73% (6/161) 2.88 0.000182 0.002507
GO:0004175 endopeptidase activity 4.35% (7/161) 2.54 0.000226 0.002842
GO:0043170 macromolecule metabolic process 21.12% (34/161) 0.9 0.000239 0.002929
GO:0000373 Group II intron splicing 1.24% (2/161) 6.23 0.0003 0.003309
GO:0070475 rRNA base methylation 1.24% (2/161) 6.23 0.0003 0.003309
GO:0009987 cellular process 27.95% (45/161) 0.73 0.000281 0.00335
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor 1.86% (3/161) 4.53 0.000299 0.003473
GO:0031167 rRNA methylation 1.24% (2/161) 6.03 0.000399 0.004294
GO:0005488 binding 39.13% (63/161) 0.52 0.000668 0.007013
GO:0003676 nucleic acid binding 13.66% (22/161) 1.07 0.000786 0.007875
GO:0000154 rRNA modification 1.24% (2/161) 5.57 0.000778 0.007981
GO:0030488 tRNA methylation 1.24% (2/161) 5.45 0.000932 0.009129
GO:0008236 serine-type peptidase activity 3.11% (5/161) 2.73 0.000992 0.009304
GO:0017171 serine hydrolase activity 3.11% (5/161) 2.73 0.000992 0.009304
GO:0140098 catalytic activity, acting on RNA 4.35% (7/161) 2.16 0.001069 0.009819
GO:0004252 serine-type endopeptidase activity 2.48% (4/161) 3.09 0.001304 0.011273
GO:0004222 metalloendopeptidase activity 1.86% (3/161) 3.81 0.001303 0.011497
GO:0070006 metalloaminopeptidase activity 1.24% (2/161) 5.23 0.001278 0.011501
GO:0003755 peptidyl-prolyl cis-trans isomerase activity 1.86% (3/161) 3.71 0.001591 0.013496
GO:0016859 cis-trans isomerase activity 1.86% (3/161) 3.69 0.001669 0.01363
GO:0016651 oxidoreductase activity, acting on NAD(P)H 1.86% (3/161) 3.69 0.001669 0.01363
GO:0004177 aminopeptidase activity 1.24% (2/161) 4.95 0.001896 0.015199
GO:0006364 rRNA processing 1.86% (3/161) 3.6 0.002003 0.015775
GO:0008235 metalloexopeptidase activity 1.24% (2/161) 4.86 0.002127 0.016458
GO:0006568 tryptophan metabolic process 1.24% (2/161) 4.79 0.002372 0.017431
GO:0042430 indole-containing compound metabolic process 1.24% (2/161) 4.79 0.002372 0.017431
GO:0006586 indolalkylamine metabolic process 1.24% (2/161) 4.79 0.002372 0.017431
GO:0016072 rRNA metabolic process 1.86% (3/161) 3.47 0.002578 0.018636
GO:0043414 macromolecule methylation 1.86% (3/161) 3.45 0.002682 0.019079
GO:0008150 biological_process 39.13% (63/161) 0.44 0.003256 0.022794
GO:0048827 phyllome development 0.62% (1/161) 8.03 0.003816 0.023703
GO:0010239 chloroplast mRNA processing 0.62% (1/161) 8.03 0.003816 0.023703
GO:0031425 chloroplast RNA processing 0.62% (1/161) 8.03 0.003816 0.023703
GO:0004640 phosphoribosylanthranilate isomerase activity 0.62% (1/161) 8.03 0.003816 0.023703
GO:0048366 leaf development 0.62% (1/161) 8.03 0.003816 0.023703
GO:1901605 alpha-amino acid metabolic process 2.48% (4/161) 2.69 0.003541 0.024396
GO:0140640 catalytic activity, acting on a nucleic acid 4.97% (8/161) 1.69 0.003651 0.024769
GO:0000375 RNA splicing, via transesterification reactions 1.86% (3/161) 3.28 0.003743 0.025007
GO:0008233 peptidase activity 6.21% (10/161) 1.42 0.004566 0.027964
GO:1901606 alpha-amino acid catabolic process 1.24% (2/161) 4.28 0.004771 0.028825
GO:0009063 amino acid catabolic process 1.24% (2/161) 4.23 0.005126 0.030139
GO:0044281 small molecule metabolic process 5.59% (9/161) 1.49 0.005078 0.030262
GO:0032259 methylation 1.86% (3/161) 3.1 0.005343 0.031004
GO:0051536 iron-sulfur cluster binding 1.86% (3/161) 3.06 0.005672 0.032067
GO:0051540 metal cluster binding 1.86% (3/161) 3.06 0.005672 0.032067
GO:0006520 amino acid metabolic process 3.11% (5/161) 2.13 0.005968 0.03249
GO:0008380 RNA splicing 1.86% (3/161) 3.05 0.005841 0.032604
GO:0097159 organic cyclic compound binding 23.6% (38/161) 0.58 0.00592 0.032634
GO:0001510 RNA methylation 1.24% (2/161) 4.03 0.006659 0.035812
GO:0019478 D-amino acid catabolic process 0.62% (1/161) 7.03 0.007618 0.037327
GO:0008821 crossover junction DNA endonuclease activity 0.62% (1/161) 7.03 0.007618 0.037327
GO:0046416 D-amino acid metabolic process 0.62% (1/161) 7.03 0.007618 0.037327
GO:0030785 [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity 0.62% (1/161) 7.03 0.007618 0.037327
GO:0016889 DNA endonuclease activity, producing 3'-phosphomonoesters 0.62% (1/161) 7.03 0.007618 0.037327
GO:0018130 heterocycle biosynthetic process 3.73% (6/161) 1.83 0.007302 0.038335
GO:0019438 aromatic compound biosynthetic process 3.73% (6/161) 1.83 0.007225 0.038389
GO:0016853 isomerase activity 2.48% (4/161) 2.38 0.007542 0.039127
GO:0016054 organic acid catabolic process 1.24% (2/161) 3.75 0.009776 0.046862
GO:0046395 carboxylic acid catabolic process 1.24% (2/161) 3.75 0.009776 0.046862
GO:0019464 glycine decarboxylation via glycine cleavage system 0.62% (1/161) 6.45 0.011405 0.049799
GO:0004425 indole-3-glycerol-phosphate synthase activity 0.62% (1/161) 6.45 0.011405 0.049799
GO:0006434 seryl-tRNA aminoacylation 0.62% (1/161) 6.45 0.011405 0.049799
GO:0051499 D-aminoacyl-tRNA deacylase activity 0.62% (1/161) 6.45 0.011405 0.049799
GO:0005960 glycine cleavage complex 0.62% (1/161) 6.45 0.011405 0.049799
GO:0004828 serine-tRNA ligase activity 0.62% (1/161) 6.45 0.011405 0.049799
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (161) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms