Coexpression cluster: Cluster_382 (Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0044249 cellular biosynthetic process 21.67% (13/60) 2.79 0.0 1.2e-05
GO:1901576 organic substance biosynthetic process 21.67% (13/60) 2.67 0.0 1.6e-05
GO:0009058 biosynthetic process 21.67% (13/60) 2.55 0.0 2.7e-05
GO:1901566 organonitrogen compound biosynthetic process 15.0% (9/60) 3.03 1e-06 0.000127
GO:0044271 cellular nitrogen compound biosynthetic process 15.0% (9/60) 2.91 3e-06 0.000198
GO:0034641 cellular nitrogen compound metabolic process 20.0% (12/60) 2.17 1.1e-05 0.000643
GO:0003735 structural constituent of ribosome 10.0% (6/60) 3.47 1.7e-05 0.000855
GO:0044238 primary metabolic process 36.67% (22/60) 1.3 2.7e-05 0.000945
GO:0043603 amide metabolic process 10.0% (6/60) 3.25 4e-05 0.00098
GO:0043232 intracellular non-membrane-bounded organelle 10.0% (6/60) 3.27 3.8e-05 0.001004
GO:0043228 non-membrane-bounded organelle 10.0% (6/60) 3.27 3.8e-05 0.001004
GO:0006807 nitrogen compound metabolic process 33.33% (20/60) 1.4 2.7e-05 0.001037
GO:0043604 amide biosynthetic process 10.0% (6/60) 3.37 2.5e-05 0.001084
GO:0005198 structural molecule activity 10.0% (6/60) 3.29 3.4e-05 0.001085
GO:0009059 macromolecule biosynthetic process 11.67% (7/60) 2.86 5e-05 0.001143
GO:0044237 cellular metabolic process 30.0% (18/60) 1.44 5.7e-05 0.001229
GO:0071704 organic substance metabolic process 36.67% (22/60) 1.19 8.6e-05 0.001743
GO:0005840 ribosome 8.33% (5/60) 3.38 0.00012 0.002312
GO:0006412 translation 8.33% (5/60) 3.24 0.00019 0.003466
GO:0008152 metabolic process 36.67% (22/60) 1.1 0.00022 0.003621
GO:0043043 peptide biosynthetic process 8.33% (5/60) 3.2 0.000215 0.003722
GO:0006518 peptide metabolic process 8.33% (5/60) 3.14 0.000263 0.004135
GO:1901564 organonitrogen compound metabolic process 25.0% (15/60) 1.31 0.000742 0.011161
GO:0006082 organic acid metabolic process 8.33% (5/60) 2.75 0.000887 0.011809
GO:0043436 oxoacid metabolic process 8.33% (5/60) 2.75 0.00088 0.012177
GO:0019752 carboxylic acid metabolic process 8.33% (5/60) 2.76 0.000857 0.012362
GO:0070773 protein-N-terminal glutamine amidohydrolase activity 1.67% (1/60) 9.46 0.001422 0.014911
GO:0008837 diaminopimelate epimerase activity 1.67% (1/60) 9.46 0.001422 0.014911
GO:1901981 phosphatidylinositol phosphate binding 1.67% (1/60) 9.46 0.001422 0.014911
GO:0032266 phosphatidylinositol-3-phosphate binding 1.67% (1/60) 9.46 0.001422 0.014911
GO:0034654 nucleobase-containing compound biosynthetic process 6.67% (4/60) 3.01 0.001542 0.015246
GO:0009067 aspartate family amino acid biosynthetic process 3.33% (2/60) 5.14 0.001498 0.015248
GO:0044281 small molecule metabolic process 10.0% (6/60) 2.33 0.001214 0.015554
GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides 3.33% (2/60) 5.25 0.001283 0.015852
GO:0009066 aspartate family amino acid metabolic process 3.33% (2/60) 5.07 0.001651 0.015867
GO:0009987 cellular process 33.33% (20/60) 0.99 0.001384 0.016513
GO:0071266 'de novo' L-methionine biosynthetic process 1.67% (1/60) 8.46 0.002842 0.019283
GO:0000315 organellar large ribosomal subunit 1.67% (1/60) 8.46 0.002842 0.019283
GO:0008418 protein-N-terminal asparagine amidohydrolase activity 1.67% (1/60) 8.46 0.002842 0.019283
GO:0000469 obsolete cleavage involved in rRNA processing 1.67% (1/60) 8.46 0.002842 0.019283
GO:0004046 aminoacylase activity 1.67% (1/60) 8.46 0.002842 0.019283
GO:0047661 amino-acid racemase activity 1.67% (1/60) 8.46 0.002842 0.019283
GO:0036361 racemase activity, acting on amino acids and derivatives 1.67% (1/60) 8.46 0.002842 0.019283
GO:0008934 inositol monophosphate 1-phosphatase activity 1.67% (1/60) 8.46 0.002842 0.019283
GO:0004121 cystathionine beta-lyase activity 1.67% (1/60) 8.46 0.002842 0.019283
GO:0005762 mitochondrial large ribosomal subunit 1.67% (1/60) 8.46 0.002842 0.019283
GO:0052834 inositol monophosphate phosphatase activity 1.67% (1/60) 8.46 0.002842 0.019283
GO:0004019 adenylosuccinate synthase activity 1.67% (1/60) 8.46 0.002842 0.019283
GO:0043170 macromolecule metabolic process 25.0% (15/60) 1.14 0.002312 0.020509
GO:0043229 intracellular organelle 10.0% (6/60) 2.15 0.002296 0.020909
GO:0043226 organelle 10.0% (6/60) 2.15 0.002296 0.020909
GO:0006139 nucleobase-containing compound metabolic process 11.67% (7/60) 1.83 0.003376 0.022462
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds 3.33% (2/60) 4.46 0.003789 0.023409
GO:0018130 heterocycle biosynthetic process 6.67% (4/60) 2.67 0.003679 0.02357
GO:0090407 organophosphate biosynthetic process 5.0% (3/60) 3.27 0.003749 0.023585
GO:0019438 aromatic compound biosynthetic process 6.67% (4/60) 2.67 0.003649 0.023823
GO:0046394 carboxylic acid biosynthetic process 5.0% (3/60) 3.2 0.004353 0.024693
GO:0016053 organic acid biosynthetic process 5.0% (3/60) 3.2 0.004353 0.024693
GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives 1.67% (1/60) 7.87 0.004261 0.024986
GO:0000814 ESCRT II complex 1.67% (1/60) 7.87 0.004261 0.024986
GO:0044272 sulfur compound biosynthetic process 3.33% (2/60) 4.33 0.004514 0.02519
GO:0016070 RNA metabolic process 8.33% (5/60) 2.23 0.004203 0.025515
GO:1901362 organic cyclic compound biosynthetic process 6.67% (4/60) 2.53 0.005137 0.027769
GO:0003723 RNA binding 8.33% (5/60) 2.17 0.005066 0.02782
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 3.33% (2/60) 4.19 0.005434 0.028488
GO:0046483 heterocycle metabolic process 11.67% (7/60) 1.71 0.005422 0.028864
GO:0000375 RNA splicing, via transesterification reactions 3.33% (2/60) 4.12 0.005995 0.030961
GO:0006725 cellular aromatic compound metabolic process 11.67% (7/60) 1.67 0.006257 0.031838
GO:1901360 organic cyclic compound metabolic process 11.67% (7/60) 1.64 0.006927 0.034734
GO:0036452 ESCRT complex 1.67% (1/60) 7.14 0.007091 0.03505
GO:0004315 3-oxoacyl-[acyl-carrier-protein] synthase activity 1.67% (1/60) 6.87 0.008503 0.038209
GO:0032147 activation of protein kinase activity 1.67% (1/60) 6.87 0.008503 0.038209
GO:0006383 transcription by RNA polymerase III 1.67% (1/60) 6.87 0.008503 0.038209
GO:0005819 spindle 1.67% (1/60) 6.87 0.008503 0.038209
GO:0044283 small molecule biosynthetic process 5.0% (3/60) 2.88 0.00801 0.038494
GO:0008380 RNA splicing 3.33% (2/60) 3.89 0.008158 0.038665
GO:0006164 purine nucleotide biosynthetic process 3.33% (2/60) 3.9 0.007993 0.038953
GO:0044391 ribosomal subunit 3.33% (2/60) 3.83 0.008831 0.039172
GO:0006520 amino acid metabolic process 5.0% (3/60) 2.82 0.008954 0.039214
GO:0072522 purine-containing compound biosynthetic process 3.33% (2/60) 3.73 0.010066 0.040976
GO:0043413 macromolecule glycosylation 3.33% (2/60) 3.73 0.010066 0.040976
GO:0006486 protein glycosylation 3.33% (2/60) 3.73 0.010066 0.040976
GO:0004738 pyruvate dehydrogenase activity 1.67% (1/60) 6.65 0.009914 0.04183
GO:0000373 Group II intron splicing 1.67% (1/60) 6.65 0.009914 0.04183
GO:0004739 pyruvate dehydrogenase (acetyl-transferring) activity 1.67% (1/60) 6.65 0.009914 0.04183
GO:0046451 diaminopimelate metabolic process 1.67% (1/60) 6.29 0.012728 0.042346
GO:0009092 homoserine metabolic process 1.67% (1/60) 6.29 0.012728 0.042346
GO:0009089 lysine biosynthetic process via diaminopimelate 1.67% (1/60) 6.29 0.012728 0.042346
GO:0009085 lysine biosynthetic process 1.67% (1/60) 6.29 0.012728 0.042346
GO:0006553 lysine metabolic process 1.67% (1/60) 6.29 0.012728 0.042346
GO:0010562 positive regulation of phosphorus metabolic process 1.67% (1/60) 6.29 0.012728 0.042346
GO:0042327 positive regulation of phosphorylation 1.67% (1/60) 6.29 0.012728 0.042346
GO:0033674 positive regulation of kinase activity 1.67% (1/60) 6.29 0.012728 0.042346
GO:0019346 transsulfuration 1.67% (1/60) 6.29 0.012728 0.042346
GO:0045937 positive regulation of phosphate metabolic process 1.67% (1/60) 6.29 0.012728 0.042346
GO:0050667 homocysteine metabolic process 1.67% (1/60) 6.29 0.012728 0.042346
GO:0071265 L-methionine biosynthetic process 1.67% (1/60) 6.29 0.012728 0.042346
GO:0009165 nucleotide biosynthetic process 3.33% (2/60) 3.53 0.013159 0.042953
GO:1901293 nucleoside phosphate biosynthetic process 3.33% (2/60) 3.53 0.013159 0.042953
GO:0070085 glycosylation 3.33% (2/60) 3.68 0.010805 0.043471
GO:0006379 obsolete mRNA cleavage 1.67% (1/60) 6.46 0.011322 0.043526
GO:0001934 positive regulation of protein phosphorylation 1.67% (1/60) 6.46 0.011322 0.043526
GO:0045860 positive regulation of protein kinase activity 1.67% (1/60) 6.46 0.011322 0.043526
GO:0006790 sulfur compound metabolic process 3.33% (2/60) 3.65 0.011183 0.044475
GO:0008150 biological_process 43.33% (26/60) 0.59 0.011842 0.044534
GO:0006396 RNA processing 5.0% (3/60) 2.57 0.014301 0.044577
GO:0008652 amino acid biosynthetic process 3.33% (2/60) 3.47 0.0142 0.044665
GO:0006397 mRNA processing 3.33% (2/60) 3.47 0.0142 0.044665
GO:1901607 alpha-amino acid biosynthetic process 3.33% (2/60) 3.61 0.011761 0.044717
GO:0006351 DNA-templated transcription 3.33% (2/60) 3.45 0.014626 0.045184
GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor 1.67% (1/60) 6.14 0.014132 0.045276
GO:0046854 phosphatidylinositol phosphate biosynthetic process 1.67% (1/60) 6.14 0.014132 0.045276
GO:0006086 acetyl-CoA biosynthetic process from pyruvate 1.67% (1/60) 6.0 0.015535 0.047567
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (60) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms