Coexpression cluster: Cluster_125 (Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding 6.25% (6/96) 5.64 0.0 1e-06
GO:1990837 sequence-specific double-stranded DNA binding 6.25% (6/96) 5.24 0.0 1e-06
GO:0001067 transcription regulatory region nucleic acid binding 6.25% (6/96) 5.28 0.0 1e-06
GO:0000976 transcription cis-regulatory region binding 6.25% (6/96) 5.28 0.0 1e-06
GO:0045944 positive regulation of transcription by RNA polymerase II 6.25% (6/96) 5.39 0.0 1e-06
GO:0031328 positive regulation of cellular biosynthetic process 6.25% (6/96) 4.87 0.0 2e-06
GO:0010557 positive regulation of macromolecule biosynthetic process 6.25% (6/96) 4.87 0.0 2e-06
GO:0009891 positive regulation of biosynthetic process 6.25% (6/96) 4.87 0.0 2e-06
GO:0045935 positive regulation of nucleobase-containing compound metabolic process 6.25% (6/96) 4.94 0.0 2e-06
GO:0045893 positive regulation of DNA-templated transcription 6.25% (6/96) 4.96 0.0 2e-06
GO:0051254 positive regulation of RNA metabolic process 6.25% (6/96) 4.96 0.0 2e-06
GO:1902680 positive regulation of RNA biosynthetic process 6.25% (6/96) 4.96 0.0 2e-06
GO:0031325 positive regulation of cellular metabolic process 6.25% (6/96) 4.72 0.0 3e-06
GO:0009893 positive regulation of metabolic process 6.25% (6/96) 4.62 0.0 3e-06
GO:0051173 positive regulation of nitrogen compound metabolic process 6.25% (6/96) 4.64 0.0 3e-06
GO:0010604 positive regulation of macromolecule metabolic process 6.25% (6/96) 4.64 0.0 3e-06
GO:0048522 positive regulation of cellular process 6.25% (6/96) 4.65 0.0 3e-06
GO:0006357 regulation of transcription by RNA polymerase II 6.25% (6/96) 4.48 0.0 5e-06
GO:0003690 double-stranded DNA binding 6.25% (6/96) 4.39 0.0 7e-06
GO:0048518 positive regulation of biological process 6.25% (6/96) 4.21 1e-06 1.4e-05
GO:0046983 protein dimerization activity 7.29% (7/96) 2.77 8.1e-05 0.001121
GO:0043565 sequence-specific DNA binding 6.25% (6/96) 3.07 8.7e-05 0.001149
GO:0005634 nucleus 6.25% (6/96) 2.77 0.000262 0.003299
GO:0003700 DNA-binding transcription factor activity 8.33% (8/96) 2.08 0.000623 0.007526
GO:0140110 transcription regulator activity 8.33% (8/96) 1.98 0.000984 0.011418
GO:0043227 membrane-bounded organelle 6.25% (6/96) 2.36 0.001168 0.012543
GO:0043231 intracellular membrane-bounded organelle 6.25% (6/96) 2.36 0.001168 0.012543
GO:0003676 nucleic acid binding 15.62% (15/96) 1.26 0.001333 0.013807
GO:0031326 regulation of cellular biosynthetic process 10.42% (10/96) 1.62 0.001545 0.014002
GO:0009889 regulation of biosynthetic process 10.42% (10/96) 1.62 0.001545 0.014002
GO:0010556 regulation of macromolecule biosynthetic process 10.42% (10/96) 1.62 0.001529 0.014782
GO:0010468 regulation of gene expression 10.42% (10/96) 1.63 0.001506 0.015056
GO:0031323 regulation of cellular metabolic process 10.42% (10/96) 1.55 0.002171 0.018518
GO:0060255 regulation of macromolecule metabolic process 10.42% (10/96) 1.55 0.002171 0.018518
GO:0019222 regulation of metabolic process 10.42% (10/96) 1.54 0.002379 0.019708
GO:0050789 regulation of biological process 12.5% (12/96) 1.27 0.003927 0.031631
GO:0003677 DNA binding 9.38% (9/96) 1.49 0.004769 0.035462
GO:0000244 spliceosomal tri-snRNP complex assembly 1.04% (1/96) 7.78 0.004546 0.035629
GO:0065007 biological regulation 12.5% (12/96) 1.24 0.004765 0.036366
GO:0048658 anther wall tapetum development 1.04% (1/96) 7.19 0.006811 0.043894
GO:0008429 phosphatidylethanolamine binding 1.04% (1/96) 7.19 0.006811 0.043894
GO:0048573 photoperiodism, flowering 1.04% (1/96) 7.19 0.006811 0.043894
GO:0009648 photoperiodism 1.04% (1/96) 7.19 0.006811 0.043894
GO:0050793 regulation of developmental process 2.08% (2/96) 4.02 0.006789 0.048021
GO:0004386 helicase activity 3.12% (3/96) 2.97 0.006759 0.049002
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (96) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms