Coexpression cluster: Cluster_374 (Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0009058 biosynthetic process 22.03% (13/59) 2.58 0.0 6.6e-05
GO:1901576 organic substance biosynthetic process 18.64% (11/59) 2.45 4e-06 0.000494
GO:0044283 small molecule biosynthetic process 10.17% (6/59) 3.9 3e-06 0.000548
GO:0046483 heterocycle metabolic process 18.64% (11/59) 2.38 7e-06 0.000589
GO:0044237 cellular metabolic process 32.2% (19/59) 1.54 1.2e-05 0.000677
GO:0044249 cellular biosynthetic process 16.95% (10/59) 2.43 1.4e-05 0.000704
GO:1901360 organic cyclic compound metabolic process 18.64% (11/59) 2.32 1e-05 0.000727
GO:0006725 cellular aromatic compound metabolic process 16.95% (10/59) 2.21 5.2e-05 0.002038
GO:0034641 cellular nitrogen compound metabolic process 18.64% (11/59) 2.07 5.1e-05 0.002238
GO:0006082 organic acid metabolic process 10.17% (6/59) 3.04 9e-05 0.002629
GO:1901566 organonitrogen compound biosynthetic process 11.86% (7/59) 2.69 0.000103 0.002775
GO:0043436 oxoacid metabolic process 10.17% (6/59) 3.04 8.9e-05 0.002838
GO:0019752 carboxylic acid metabolic process 10.17% (6/59) 3.05 8.6e-05 0.003025
GO:0044272 sulfur compound biosynthetic process 5.08% (3/59) 4.94 0.000133 0.003326
GO:0006396 RNA processing 8.47% (5/59) 3.33 0.000143 0.003344
GO:0005737 cytoplasm 6.78% (4/59) 3.86 0.000172 0.003534
GO:0044281 small molecule metabolic process 11.86% (7/59) 2.58 0.000165 0.003619
GO:0006807 nitrogen compound metabolic process 30.51% (18/59) 1.27 0.000241 0.00468
GO:0046394 carboxylic acid biosynthetic process 6.78% (4/59) 3.64 0.00031 0.004925
GO:0016053 organic acid biosynthetic process 6.78% (4/59) 3.64 0.00031 0.004925
GO:0070279 vitamin B6 binding 5.08% (3/59) 4.53 0.000308 0.005394
GO:0030170 pyridoxal phosphate binding 5.08% (3/59) 4.53 0.000308 0.005394
GO:0018130 heterocycle biosynthetic process 8.47% (5/59) 3.01 0.000392 0.005965
GO:0008152 metabolic process 35.59% (21/59) 1.06 0.000483 0.007041
GO:0006790 sulfur compound metabolic process 5.08% (3/59) 4.26 0.000531 0.007438
GO:0016070 RNA metabolic process 10.17% (6/59) 2.52 0.000613 0.007664
GO:1901362 organic cyclic compound biosynthetic process 8.47% (5/59) 2.88 0.000602 0.007803
GO:0071704 organic substance metabolic process 33.9% (20/59) 1.08 0.000584 0.007864
GO:0008652 amino acid biosynthetic process 5.08% (3/59) 4.08 0.000766 0.009241
GO:0006520 amino acid metabolic process 6.78% (4/59) 3.26 0.000828 0.009662
GO:0051539 4 iron, 4 sulfur cluster binding 3.39% (2/59) 5.48 0.000928 0.010152
GO:0019842 vitamin binding 5.08% (3/59) 3.99 0.000914 0.010316
GO:0034472 snRNA 3'-end processing 1.69% (1/59) 9.48 0.001398 0.013229
GO:0004424 imidazoleglycerol-phosphate dehydratase activity 1.69% (1/59) 9.48 0.001398 0.013229
GO:0034477 U6 snRNA 3'-end processing 1.69% (1/59) 9.48 0.001398 0.013229
GO:0004789 thiamine-phosphate diphosphorylase activity 1.69% (1/59) 9.48 0.001398 0.013229
GO:0008972 phosphomethylpyrimidine kinase activity 1.69% (1/59) 9.48 0.001398 0.013229
GO:0009987 cellular process 32.2% (19/59) 0.94 0.002821 0.024685
GO:0043874 acireductone synthase activity 1.69% (1/59) 8.48 0.002795 0.025084
GO:0004109 coproporphyrinogen oxidase activity 1.69% (1/59) 8.48 0.002795 0.025084
GO:0006139 nucleobase-containing compound metabolic process 11.86% (7/59) 1.86 0.003067 0.026182
GO:0019438 aromatic compound biosynthetic process 6.78% (4/59) 2.69 0.003434 0.028615
GO:0004326 tetrahydrofolylpolyglutamate synthase activity 1.69% (1/59) 7.9 0.00419 0.029926
GO:0009107 lipoate biosynthetic process 1.69% (1/59) 7.9 0.00419 0.029926
GO:0009106 lipoate metabolic process 1.69% (1/59) 7.9 0.00419 0.029926
GO:0016992 lipoate synthase activity 1.69% (1/59) 7.9 0.00419 0.029926
GO:0034309 primary alcohol biosynthetic process 1.69% (1/59) 7.9 0.00419 0.029926
GO:0009228 thiamine biosynthetic process 1.69% (1/59) 7.9 0.00419 0.029926
GO:0000398 mRNA splicing, via spliceosome 3.39% (2/59) 4.35 0.004368 0.030576
GO:0044238 primary metabolic process 28.81% (17/59) 0.95 0.004548 0.031209
GO:0043227 membrane-bounded organelle 6.78% (4/59) 2.48 0.005842 0.03352
GO:0043231 intracellular membrane-bounded organelle 6.78% (4/59) 2.48 0.005842 0.03352
GO:0090304 nucleic acid metabolic process 10.17% (6/59) 1.98 0.004123 0.033555
GO:0004042 acetyl-CoA:L-glutamate N-acetyltransferase activity 1.69% (1/59) 7.48 0.005582 0.033687
GO:0004306 ethanolamine-phosphate cytidylyltransferase activity 1.69% (1/59) 7.48 0.005582 0.033687
GO:0034227 tRNA thio-modification 1.69% (1/59) 7.48 0.005582 0.033687
GO:0046337 phosphatidylethanolamine metabolic process 1.69% (1/59) 7.48 0.005582 0.033687
GO:0004347 glucose-6-phosphate isomerase activity 1.69% (1/59) 7.48 0.005582 0.033687
GO:0006646 phosphatidylethanolamine biosynthetic process 1.69% (1/59) 7.48 0.005582 0.033687
GO:0000375 RNA splicing, via transesterification reactions 3.39% (2/59) 4.14 0.005803 0.034423
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 3.39% (2/59) 4.22 0.005259 0.035398
GO:0044271 cellular nitrogen compound biosynthetic process 8.47% (5/59) 2.09 0.006444 0.036375
GO:0016073 snRNA metabolic process 1.69% (1/59) 7.16 0.006973 0.038134
GO:0016180 snRNA processing 1.69% (1/59) 7.16 0.006973 0.038134
GO:0051540 metal cluster binding 3.39% (2/59) 3.93 0.007738 0.041034
GO:0051536 iron-sulfur cluster binding 3.39% (2/59) 3.93 0.007738 0.041034
GO:0008380 RNA splicing 3.39% (2/59) 3.91 0.007897 0.041254
GO:0042723 thiamine-containing compound metabolic process 1.69% (1/59) 6.9 0.008362 0.04181
GO:0006772 thiamine metabolic process 1.69% (1/59) 6.9 0.008362 0.04181
GO:0042724 thiamine-containing compound biosynthetic process 1.69% (1/59) 6.9 0.008362 0.04181
GO:0071267 L-methionine salvage 1.69% (1/59) 6.67 0.009749 0.042652
GO:0019319 hexose biosynthetic process 1.69% (1/59) 6.67 0.009749 0.042652
GO:0006094 gluconeogenesis 1.69% (1/59) 6.67 0.009749 0.042652
GO:0019509 L-methionine salvage from methylthioadenosine 1.69% (1/59) 6.67 0.009749 0.042652
GO:0046364 monosaccharide biosynthetic process 1.69% (1/59) 6.67 0.009749 0.042652
GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor 1.69% (1/59) 6.67 0.009749 0.042652
GO:0034308 primary alcohol metabolic process 1.69% (1/59) 6.67 0.009749 0.042652
GO:0046540 U4/U6 x U5 tri-snRNP complex 1.69% (1/59) 6.67 0.009749 0.042652
GO:0097526 spliceosomal tri-snRNP complex 1.69% (1/59) 6.67 0.009749 0.042652
GO:0043102 amino acid salvage 1.69% (1/59) 6.67 0.009749 0.042652
GO:0061659 ubiquitin-like protein ligase activity 3.39% (2/59) 3.65 0.011201 0.04506
GO:1901607 alpha-amino acid biosynthetic process 3.39% (2/59) 3.64 0.011389 0.045296
GO:0009396 folic acid-containing compound biosynthetic process 1.69% (1/59) 6.48 0.011134 0.045313
GO:0000105 histidine biosynthetic process 1.69% (1/59) 6.48 0.011134 0.045313
GO:0140296 general transcription initiation factor binding 1.69% (1/59) 6.48 0.011134 0.045313
GO:0006547 histidine metabolic process 1.69% (1/59) 6.48 0.011134 0.045313
GO:0017025 TBP-class protein binding 1.69% (1/59) 6.48 0.011134 0.045313
GO:0003824 catalytic activity 35.59% (21/59) 0.69 0.011895 0.046778
GO:0061630 ubiquitin protein ligase activity 3.39% (2/59) 3.66 0.011014 0.047592
GO:0071265 L-methionine biosynthetic process 1.69% (1/59) 6.31 0.012517 0.048143
GO:0008134 transcription factor binding 1.69% (1/59) 6.31 0.012517 0.048143
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (59) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms