Coexpression cluster: Cluster_291 (Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0140513 nuclear protein-containing complex 6.78% (8/118) 3.56 0.0 0.0002
GO:0060261 positive regulation of transcription initiation by RNA polymerase II 1.69% (2/118) 8.48 8e-06 0.0007
GO:2000142 regulation of DNA-templated transcription initiation 1.69% (2/118) 8.48 8e-06 0.0007
GO:2000144 positive regulation of DNA-templated transcription initiation 1.69% (2/118) 8.48 8e-06 0.0007
GO:0060260 regulation of transcription initiation by RNA polymerase II 1.69% (2/118) 8.48 8e-06 0.0007
GO:0032991 protein-containing complex 11.02% (13/118) 1.99 2.6e-05 0.001294
GO:2000058 regulation of ubiquitin-dependent protein catabolic process 1.69% (2/118) 7.9 2.3e-05 0.001309
GO:0032434 regulation of proteasomal ubiquitin-dependent protein catabolic process 1.69% (2/118) 7.9 2.3e-05 0.001309
GO:0000785 chromatin 1.69% (2/118) 7.9 2.3e-05 0.001309
GO:1990234 transferase complex 4.24% (5/118) 3.71 4.4e-05 0.001973
GO:0030162 regulation of proteolysis 1.69% (2/118) 7.16 7.7e-05 0.002676
GO:1903050 regulation of proteolysis involved in protein catabolic process 1.69% (2/118) 7.16 7.7e-05 0.002676
GO:0061136 regulation of proteasomal protein catabolic process 1.69% (2/118) 7.16 7.7e-05 0.002676
GO:0048188 Set1C/COMPASS complex 1.69% (2/118) 6.67 0.000161 0.0052
GO:0051246 regulation of protein metabolic process 3.39% (4/118) 3.81 0.0002 0.006014
GO:0035097 histone methyltransferase complex 1.69% (2/118) 6.31 0.000276 0.007314
GO:0016070 RNA metabolic process 7.63% (9/118) 2.11 0.000262 0.007394
GO:1902494 catalytic complex 5.08% (6/118) 2.73 0.000309 0.007735
GO:0042176 regulation of protein catabolic process 1.69% (2/118) 5.9 0.000503 0.011335
GO:0006351 DNA-templated transcription 3.39% (4/118) 3.47 0.000489 0.011607
GO:0034708 methyltransferase complex 1.69% (2/118) 5.58 0.000795 0.01708
GO:0006334 nucleosome assembly 1.69% (2/118) 5.39 0.001026 0.018515
GO:0034728 nucleosome organization 1.69% (2/118) 5.39 0.001026 0.018515
GO:0003713 transcription coactivator activity 1.69% (2/118) 5.48 0.000907 0.018598
GO:0090304 nucleic acid metabolic process 8.47% (10/118) 1.71 0.001002 0.019655
GO:0009894 regulation of catabolic process 1.69% (2/118) 5.31 0.001153 0.019991
GO:0005575 cellular_component 16.95% (20/118) 1.02 0.001779 0.026739
GO:0006139 nucleobase-containing compound metabolic process 9.32% (11/118) 1.51 0.001744 0.027125
GO:0003723 RNA binding 6.78% (8/118) 1.87 0.001633 0.02727
GO:0006006 glucose metabolic process 1.69% (2/118) 5.02 0.001727 0.027823
GO:0005681 spliceosomal complex 1.69% (2/118) 4.84 0.002231 0.029595
GO:0034641 cellular nitrogen compound metabolic process 11.02% (13/118) 1.31 0.002324 0.029948
GO:0032774 RNA biosynthetic process 3.39% (4/118) 2.88 0.002211 0.03022
GO:0009893 positive regulation of metabolic process 2.54% (3/118) 3.33 0.003426 0.030299
GO:0031325 positive regulation of cellular metabolic process 2.54% (3/118) 3.42 0.002831 0.0304
GO:0043933 protein-containing complex organization 3.39% (4/118) 2.69 0.003586 0.030517
GO:0010604 positive regulation of macromolecule metabolic process 2.54% (3/118) 3.34 0.003337 0.030714
GO:0051173 positive regulation of nitrogen compound metabolic process 2.54% (3/118) 3.34 0.003337 0.030714
GO:0046483 heterocycle metabolic process 9.32% (11/118) 1.38 0.00341 0.030758
GO:0071821 FANCM-MHF complex 0.85% (1/118) 8.48 0.002797 0.030766
GO:0003352 regulation of cilium movement 0.85% (1/118) 8.48 0.002797 0.030766
GO:1903259 exon-exon junction complex disassembly 0.85% (1/118) 8.48 0.002797 0.030766
GO:0060632 regulation of microtubule-based movement 0.85% (1/118) 8.48 0.002797 0.030766
GO:0015250 water channel activity 0.85% (1/118) 8.48 0.002797 0.030766
GO:0005372 water transmembrane transporter activity 0.85% (1/118) 8.48 0.002797 0.030766
GO:0019222 regulation of metabolic process 9.32% (11/118) 1.38 0.003549 0.030777
GO:0080090 regulation of primary metabolic process 9.32% (11/118) 1.47 0.002202 0.03103
GO:0051171 regulation of nitrogen compound metabolic process 9.32% (11/118) 1.47 0.002143 0.031171
GO:0048522 positive regulation of cellular process 2.54% (3/118) 3.35 0.003249 0.031177
GO:0060255 regulation of macromolecule metabolic process 9.32% (11/118) 1.39 0.003227 0.031636
GO:0009059 macromolecule biosynthetic process 5.93% (7/118) 1.88 0.003045 0.031942
GO:0065004 protein-DNA complex assembly 1.69% (2/118) 4.58 0.003206 0.032128
GO:0050789 regulation of biological process 11.86% (14/118) 1.2 0.003141 0.032191
GO:0065007 biological regulation 11.86% (14/118) 1.16 0.003903 0.032593
GO:0006725 cellular aromatic compound metabolic process 9.32% (11/118) 1.35 0.004169 0.034182
GO:0043539 protein serine/threonine kinase activator activity 0.85% (1/118) 7.48 0.005586 0.034991
GO:0061575 cyclin-dependent protein serine/threonine kinase activator activity 0.85% (1/118) 7.48 0.005586 0.034991
GO:0045737 positive regulation of cyclin-dependent protein serine/threonine kinase activity 0.85% (1/118) 7.48 0.005586 0.034991
GO:0071902 positive regulation of protein serine/threonine kinase activity 0.85% (1/118) 7.48 0.005586 0.034991
GO:0045787 positive regulation of cell cycle 0.85% (1/118) 7.48 0.005586 0.034991
GO:0097602 cullin family protein binding 0.85% (1/118) 7.48 0.005586 0.034991
GO:0004819 glutamine-tRNA ligase activity 0.85% (1/118) 7.48 0.005586 0.034991
GO:0019209 kinase activator activity 0.85% (1/118) 7.48 0.005586 0.034991
GO:1904031 positive regulation of cyclin-dependent protein kinase activity 0.85% (1/118) 7.48 0.005586 0.034991
GO:0006425 glutaminyl-tRNA aminoacylation 0.85% (1/118) 7.48 0.005586 0.034991
GO:0005665 RNA polymerase II, core complex 0.85% (1/118) 7.48 0.005586 0.034991
GO:0030295 protein kinase activator activity 0.85% (1/118) 7.48 0.005586 0.034991
GO:0061695 transferase complex, transferring phosphorus-containing groups 1.69% (2/118) 4.35 0.004345 0.034993
GO:0019220 regulation of phosphate metabolic process 1.69% (2/118) 4.12 0.005923 0.036098
GO:0051174 regulation of phosphorus metabolic process 1.69% (2/118) 4.12 0.005923 0.036098
GO:0140098 catalytic activity, acting on RNA 4.24% (5/118) 2.12 0.006102 0.036695
GO:0019318 hexose metabolic process 1.69% (2/118) 4.09 0.006208 0.036839
GO:0005634 nucleus 4.24% (5/118) 2.21 0.004702 0.037205
GO:1901360 organic cyclic compound metabolic process 9.32% (11/118) 1.32 0.004805 0.037361
GO:0043226 organelle 6.78% (8/118) 1.59 0.005379 0.04043
GO:0043229 intracellular organelle 6.78% (8/118) 1.59 0.005379 0.04043
GO:0031399 regulation of protein modification process 1.69% (2/118) 3.96 0.007408 0.043392
GO:0048518 positive regulation of biological process 2.54% (3/118) 2.92 0.007515 0.043452
GO:0065003 protein-containing complex assembly 2.54% (3/118) 2.91 0.007661 0.043733
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 1.69% (2/118) 3.87 0.008372 0.04549
GO:0032806 carboxy-terminal domain protein kinase complex 0.85% (1/118) 6.9 0.008368 0.046022
GO:0005675 transcription factor TFIIH holo complex 0.85% (1/118) 6.9 0.008368 0.046022
GO:0006007 glucose catabolic process 0.85% (1/118) 6.9 0.008368 0.046022
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (118) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms