Coexpression cluster: Cluster_285 (Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003674 molecular_function 65.19% (103/158) 0.61 0.0 6e-06
GO:0003824 catalytic activity 39.24% (62/158) 0.83 1e-06 0.000203
GO:0031903 microbody membrane 1.27% (2/158) 7.48 4.2e-05 0.003277
GO:0005778 peroxisomal membrane 1.27% (2/158) 7.48 4.2e-05 0.003277
GO:1901576 organic substance biosynthetic process 10.76% (17/158) 1.66 3e-05 0.004097
GO:0009058 biosynthetic process 11.39% (18/158) 1.62 2.4e-05 0.00441
GO:0042440 pigment metabolic process 1.9% (3/158) 4.89 0.000141 0.004565
GO:0044249 cellular biosynthetic process 10.13% (16/158) 1.69 4.2e-05 0.004577
GO:0051192 prosthetic group binding 1.27% (2/158) 6.74 0.000138 0.004756
GO:0000036 acyl carrier activity 1.27% (2/158) 6.74 0.000138 0.004756
GO:0016560 protein import into peroxisome matrix, docking 1.27% (2/158) 6.74 0.000138 0.004756
GO:0044620 ACP phosphopantetheine attachment site binding 1.27% (2/158) 6.74 0.000138 0.004756
GO:0140414 phosphopantetheine-dependent carrier activity 1.27% (2/158) 6.74 0.000138 0.004756
GO:0006778 porphyrin-containing compound metabolic process 1.9% (3/158) 4.84 0.000158 0.004816
GO:0006779 porphyrin-containing compound biosynthetic process 1.9% (3/158) 5.06 9.8e-05 0.004922
GO:0016787 hydrolase activity 15.82% (25/158) 1.19 9.5e-05 0.005233
GO:0046148 pigment biosynthetic process 1.9% (3/158) 5.12 8.6e-05 0.005279
GO:0033014 tetrapyrrole biosynthetic process 1.9% (3/158) 4.74 0.000194 0.005623
GO:0016859 cis-trans isomerase activity 2.53% (4/158) 4.13 8.4e-05 0.005753
GO:0033013 tetrapyrrole metabolic process 1.9% (3/158) 4.56 0.000283 0.007787
GO:0044281 small molecule metabolic process 6.96% (11/158) 1.81 0.000341 0.008926
GO:0045454 cell redox homeostasis 1.27% (2/158) 6.06 0.000385 0.009613
GO:0044255 cellular lipid metabolic process 4.43% (7/158) 2.38 0.000426 0.01019
GO:0008237 metallopeptidase activity 2.53% (4/158) 3.45 0.00052 0.011923
GO:0008610 lipid biosynthetic process 3.8% (6/158) 2.53 0.00066 0.012963
GO:0016667 oxidoreductase activity, acting on a sulfur group of donors 1.9% (3/158) 4.15 0.000652 0.013272
GO:0008150 biological_process 41.14% (65/158) 0.51 0.000638 0.013493
GO:0046854 phosphatidylinositol phosphate biosynthetic process 1.27% (2/158) 5.74 0.000615 0.013528
GO:1901566 organonitrogen compound biosynthetic process 6.33% (10/158) 1.78 0.00073 0.01384
GO:0044283 small molecule biosynthetic process 3.8% (6/158) 2.48 0.000779 0.014275
GO:0071704 organic substance metabolic process 25.95% (41/158) 0.69 0.000952 0.016367
GO:0016491 oxidoreductase activity 9.49% (15/158) 1.33 0.001025 0.016577
GO:0016853 isomerase activity 3.16% (5/158) 2.73 0.000997 0.01662
GO:0008152 metabolic process 27.22% (43/158) 0.67 0.000938 0.016642
GO:0004222 metalloendopeptidase activity 1.9% (3/158) 3.84 0.001235 0.019407
GO:0006399 tRNA metabolic process 2.53% (4/158) 3.03 0.001534 0.022204
GO:0003755 peptidyl-prolyl cis-trans isomerase activity 1.9% (3/158) 3.74 0.001508 0.022416
GO:0018130 heterocycle biosynthetic process 4.43% (7/158) 2.08 0.001472 0.02249
GO:0016668 oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor 1.27% (2/158) 5.06 0.001616 0.022786
GO:0004177 aminopeptidase activity 1.27% (2/158) 4.97 0.001827 0.024504
GO:0042579 microbody 1.27% (2/158) 4.97 0.001827 0.024504
GO:0006633 fatty acid biosynthetic process 1.9% (3/158) 3.6 0.001984 0.025978
GO:0052742 phosphatidylinositol kinase activity 1.27% (2/158) 4.89 0.00205 0.026221
GO:0072330 monocarboxylic acid biosynthetic process 1.9% (3/158) 3.48 0.002544 0.031087
GO:1901362 organic cyclic compound biosynthetic process 4.43% (7/158) 1.94 0.002505 0.031308
GO:0042644 chloroplast nucleoid 0.63% (1/158) 8.06 0.003745 0.034911
GO:0046608 carotenoid isomerase activity 0.63% (1/158) 8.06 0.003745 0.034911
GO:0050311 sulfite reductase (ferredoxin) activity 0.63% (1/158) 8.06 0.003745 0.034911
GO:0016673 oxidoreductase activity, acting on a sulfur group of donors, iron-sulfur protein as acceptor 0.63% (1/158) 8.06 0.003745 0.034911
GO:0009295 nucleoid 0.63% (1/158) 8.06 0.003745 0.034911
GO:0042646 plastid nucleoid 0.63% (1/158) 8.06 0.003745 0.034911
GO:0002943 tRNA dihydrouridine synthesis 0.63% (1/158) 8.06 0.003745 0.034911
GO:0016874 ligase activity 2.53% (4/158) 2.66 0.003849 0.035283
GO:0046488 phosphatidylinositol metabolic process 1.9% (3/158) 3.4 0.002966 0.035459
GO:0016160 amylase activity 1.27% (2/158) 4.6 0.003065 0.035865
GO:0140104 molecular carrier activity 1.27% (2/158) 4.36 0.00427 0.037878
GO:0001727 lipid kinase activity 1.27% (2/158) 4.36 0.00427 0.037878
GO:0072525 pyridine-containing compound biosynthetic process 1.27% (2/158) 4.54 0.003348 0.038368
GO:0019752 carboxylic acid metabolic process 4.43% (7/158) 1.85 0.003516 0.038675
GO:0005488 binding 37.34% (59/158) 0.46 0.003453 0.038762
GO:0006082 organic acid metabolic process 4.43% (7/158) 1.84 0.003666 0.038777
GO:0043436 oxoacid metabolic process 4.43% (7/158) 1.84 0.003628 0.039127
GO:0046483 heterocycle metabolic process 8.23% (13/158) 1.2 0.004547 0.039692
GO:0006629 lipid metabolic process 4.43% (7/158) 1.77 0.004766 0.039713
GO:0044271 cellular nitrogen compound biosynthetic process 5.7% (9/158) 1.51 0.004635 0.039832
GO:0034641 cellular nitrogen compound metabolic process 9.49% (15/158) 1.09 0.00476 0.040275
GO:0009019 obsolete tRNA (guanine-N1-)-methyltransferase activity 0.63% (1/158) 7.06 0.007476 0.041534
GO:0004733 pyridoxamine phosphate oxidase activity 0.63% (1/158) 7.06 0.007476 0.041534
GO:0002953 5'-deoxynucleotidase activity 0.63% (1/158) 7.06 0.007476 0.041534
GO:1904382 mannose trimming involved in glycoprotein ERAD pathway 0.63% (1/158) 7.06 0.007476 0.041534
GO:0035977 protein deglycosylation involved in glycoprotein catabolic process 0.63% (1/158) 7.06 0.007476 0.041534
GO:0036507 protein demannosylation 0.63% (1/158) 7.06 0.007476 0.041534
GO:0008531 riboflavin kinase activity 0.63% (1/158) 7.06 0.007476 0.041534
GO:0036508 protein alpha-1,2-demannosylation 0.63% (1/158) 7.06 0.007476 0.041534
GO:0052834 inositol monophosphate phosphatase activity 0.63% (1/158) 7.06 0.007476 0.041534
GO:1904380 endoplasmic reticulum mannose trimming 0.63% (1/158) 7.06 0.007476 0.041534
GO:0008614 pyridoxine metabolic process 0.63% (1/158) 7.06 0.007476 0.041534
GO:0008615 pyridoxine biosynthetic process 0.63% (1/158) 7.06 0.007476 0.041534
GO:0031071 cysteine desulfurase activity 0.63% (1/158) 7.06 0.007476 0.041534
GO:0010224 response to UV-B 0.63% (1/158) 7.06 0.007476 0.041534
GO:0004516 nicotinate phosphoribosyltransferase activity 0.63% (1/158) 7.06 0.007476 0.041534
GO:0004325 ferrochelatase activity 0.63% (1/158) 7.06 0.007476 0.041534
GO:0016303 1-phosphatidylinositol-3-kinase activity 0.63% (1/158) 7.06 0.007476 0.041534
GO:0097468 programmed cell death in response to reactive oxygen species 0.63% (1/158) 7.06 0.007476 0.041534
GO:0010343 singlet oxygen-mediated programmed cell death 0.63% (1/158) 7.06 0.007476 0.041534
GO:0008934 inositol monophosphate 1-phosphatase activity 0.63% (1/158) 7.06 0.007476 0.041534
GO:0006517 protein deglycosylation 0.63% (1/158) 7.06 0.007476 0.041534
GO:0034660 ncRNA metabolic process 2.53% (4/158) 2.38 0.007564 0.041603
GO:0006650 glycerophospholipid metabolic process 1.9% (3/158) 2.89 0.007895 0.042993
GO:0006766 vitamin metabolic process 1.27% (2/158) 3.89 0.008077 0.043551
GO:0006661 phosphatidylinositol biosynthetic process 1.27% (2/158) 4.15 0.005659 0.046457
GO:0140101 catalytic activity, acting on a tRNA 1.9% (3/158) 3.03 0.006044 0.046816
GO:0018208 peptidyl-proline modification 1.27% (2/158) 4.11 0.006035 0.047416
GO:0000413 protein peptidyl-prolyl isomerization 1.27% (2/158) 4.11 0.006035 0.047416
GO:0006631 fatty acid metabolic process 1.9% (3/158) 3.05 0.005874 0.047514
GO:0046486 glycerolipid metabolic process 1.9% (3/158) 2.81 0.009149 0.048855
GO:0042364 water-soluble vitamin biosynthetic process 1.27% (2/158) 4.06 0.006421 0.049052
GO:1901360 organic cyclic compound metabolic process 8.23% (13/158) 1.14 0.006612 0.049142
GO:0090407 organophosphate biosynthetic process 2.53% (4/158) 2.29 0.009337 0.049378
GO:0019438 aromatic compound biosynthetic process 3.8% (6/158) 1.86 0.006611 0.049812
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (158) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms