Coexpression cluster: Cluster_334 (Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0005575 cellular_component 26.5% (53/200) 1.67 0.0 0.0
GO:0032991 protein-containing complex 14.0% (28/200) 2.33 0.0 0.0
GO:0003674 molecular_function 64.0% (128/200) 0.58 0.0 0.0
GO:0008150 biological_process 49.0% (98/200) 0.76 0.0 0.0
GO:0015031 protein transport 5.5% (11/200) 3.43 0.0 1e-06
GO:0008104 protein localization 5.5% (11/200) 3.28 0.0 1e-06
GO:0070727 cellular macromolecule localization 5.5% (11/200) 3.28 0.0 1e-06
GO:0033036 macromolecule localization 5.5% (11/200) 3.28 0.0 1e-06
GO:0030119 AP-type membrane coat adaptor complex 2.5% (5/200) 5.87 0.0 1e-06
GO:0045184 establishment of protein localization 5.5% (11/200) 3.32 0.0 1e-06
GO:0009987 cellular process 33.0% (66/200) 0.97 0.0 1e-06
GO:0098796 membrane protein complex 6.0% (12/200) 3.14 0.0 2e-06
GO:0016817 hydrolase activity, acting on acid anhydrides 7.5% (15/200) 2.7 0.0 2e-06
GO:0017111 ribonucleoside triphosphate phosphatase activity 7.0% (14/200) 2.73 0.0 2e-06
GO:0071705 nitrogen compound transport 6.0% (12/200) 2.98 0.0 2e-06
GO:0016462 pyrophosphatase activity 7.0% (14/200) 2.64 0.0 3e-06
GO:0008152 metabolic process 32.5% (65/200) 0.93 0.0 3e-06
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 7.0% (14/200) 2.61 0.0 4e-06
GO:0036402 proteasome-activating activity 2.0% (4/200) 6.26 0.0 6e-06
GO:0044238 primary metabolic process 29.0% (58/200) 0.96 0.0 8e-06
GO:0043170 macromolecule metabolic process 24.0% (48/200) 1.08 0.0 1e-05
GO:0030131 clathrin adaptor complex 2.0% (4/200) 5.91 0.0 1.4e-05
GO:0006807 nitrogen compound metabolic process 25.5% (51/200) 1.01 1e-06 1.6e-05
GO:0051641 cellular localization 5.5% (11/200) 2.83 1e-06 1.6e-05
GO:0043413 macromolecule glycosylation 3.5% (7/200) 3.8 1e-06 2e-05
GO:0006486 protein glycosylation 3.5% (7/200) 3.8 1e-06 2e-05
GO:0070085 glycosylation 3.5% (7/200) 3.75 1e-06 2.5e-05
GO:0071704 organic substance metabolic process 29.5% (59/200) 0.88 1e-06 3e-05
GO:0016192 vesicle-mediated transport 4.5% (9/200) 2.95 3e-06 6.7e-05
GO:1902494 catalytic complex 5.0% (10/200) 2.71 4e-06 8.4e-05
GO:0032561 guanyl ribonucleotide binding 4.0% (8/200) 3.02 7e-06 0.000147
GO:0005525 GTP binding 4.0% (8/200) 3.02 7e-06 0.000147
GO:0071702 organic substance transport 5.5% (11/200) 2.44 7e-06 0.000154
GO:0006886 intracellular protein transport 3.5% (7/200) 3.32 7e-06 0.000159
GO:0005092 GDP-dissociation inhibitor activity 1.5% (3/200) 6.14 9e-06 0.000165
GO:0019001 guanyl nucleotide binding 4.0% (8/200) 2.98 9e-06 0.000171
GO:0140534 endoplasmic reticulum protein-containing complex 2.0% (4/200) 4.81 1.2e-05 0.00022
GO:0003924 GTPase activity 3.5% (7/200) 3.09 2e-05 0.000357
GO:0019538 protein metabolic process 17.5% (35/200) 1.06 2.8e-05 0.000472
GO:0005741 mitochondrial outer membrane 1.5% (3/200) 5.61 2.9e-05 0.000473
GO:1905369 endopeptidase complex 1.5% (3/200) 5.61 2.9e-05 0.000473
GO:0030117 membrane coat 2.0% (4/200) 4.36 4.3e-05 0.000689
GO:0030163 protein catabolic process 2.0% (4/200) 4.33 4.8e-05 0.000741
GO:0006810 transport 9.5% (19/200) 1.48 6e-05 0.000888
GO:0005488 binding 40.0% (80/200) 0.56 5.9e-05 0.000891
GO:0008135 translation factor activity, RNA binding 2.5% (5/200) 3.57 6.8e-05 0.000974
GO:0090079 translation regulator activity, nucleic acid binding 2.5% (5/200) 3.57 6.8e-05 0.000974
GO:0051234 establishment of localization 9.5% (19/200) 1.46 7.1e-05 0.000989
GO:0051179 localization 9.5% (19/200) 1.44 8.3e-05 0.001138
GO:0045182 translation regulator activity 2.5% (5/200) 3.49 8.9e-05 0.001188
GO:1901565 organonitrogen compound catabolic process 3.0% (6/200) 3.03 0.000102 0.001342
GO:1901564 organonitrogen compound metabolic process 19.0% (38/200) 0.91 0.000105 0.001348
GO:0110165 cellular anatomical entity 13.5% (27/200) 1.13 0.000108 0.001359
GO:0007264 small GTPase mediated signal transduction 1.5% (3/200) 4.98 0.000113 0.001397
GO:0140312 cargo adaptor activity 1.0% (2/200) 6.72 0.000133 0.001487
GO:0005093 Rab GDP-dissociation inhibitor activity 1.0% (2/200) 6.72 0.000133 0.001487
GO:0035615 clathrin adaptor activity 1.0% (2/200) 6.72 0.000133 0.001487
GO:0008250 oligosaccharyltransferase complex 1.0% (2/200) 6.72 0.000133 0.001487
GO:0035639 purine ribonucleoside triphosphate binding 13.5% (27/200) 1.12 0.000124 0.001513
GO:0003743 translation initiation factor activity 2.0% (4/200) 3.94 0.000138 0.001517
GO:0097159 organic cyclic compound binding 26.0% (52/200) 0.72 0.000129 0.001546
GO:0046907 intracellular transport 3.5% (7/200) 2.65 0.000144 0.001549
GO:0051649 establishment of localization in cell 3.5% (7/200) 2.63 0.000151 0.001606
GO:0140535 intracellular protein-containing complex 3.0% (6/200) 2.87 0.000186 0.001948
GO:0016255 attachment of GPI anchor to protein 1.0% (2/200) 6.4 0.000222 0.00228
GO:0009057 macromolecule catabolic process 3.5% (7/200) 2.54 0.000225 0.002281
GO:1905368 peptidase complex 1.5% (3/200) 4.61 0.000252 0.002477
GO:0034641 cellular nitrogen compound metabolic process 10.5% (21/200) 1.24 0.000251 0.002503
GO:0140657 ATP-dependent activity 5.0% (10/200) 1.97 0.000276 0.002674
GO:0006457 protein folding 2.5% (5/200) 3.11 0.000301 0.002879
GO:0006413 translational initiation 1.5% (3/200) 4.5 0.000315 0.002968
GO:0008303 caspase complex 1.0% (2/200) 6.14 0.000331 0.003036
GO:0042765 GPI-anchor transamidase complex 1.0% (2/200) 6.14 0.000331 0.003036
GO:0016887 ATP hydrolysis activity 3.5% (7/200) 2.44 0.00034 0.003077
GO:0031968 organelle outer membrane 1.5% (3/200) 4.45 0.00035 0.003123
GO:0005737 cytoplasm 3.0% (6/200) 2.68 0.000374 0.003291
GO:0003723 RNA binding 6.0% (12/200) 1.7 0.000385 0.003347
GO:0003824 catalytic activity 32.5% (65/200) 0.56 0.000391 0.00335
GO:0009058 biosynthetic process 9.0% (18/200) 1.28 0.000487 0.004125
GO:0008509 monoatomic anion transmembrane transporter activity 1.5% (3/200) 4.26 0.000516 0.004311
GO:1901576 organic substance biosynthetic process 8.5% (17/200) 1.32 0.000525 0.004339
GO:1901363 heterocyclic compound binding 15.5% (31/200) 0.89 0.000615 0.004894
GO:0098656 monoatomic anion transmembrane transport 1.0% (2/200) 5.72 0.000614 0.004953
GO:0006487 protein N-linked glycosylation 1.0% (2/200) 5.72 0.000614 0.004953
GO:0036094 small molecule binding 15.5% (31/200) 0.88 0.000691 0.005312
GO:0000166 nucleotide binding 15.0% (30/200) 0.9 0.000689 0.005363
GO:1901265 nucleoside phosphate binding 15.0% (30/200) 0.9 0.000689 0.005363
GO:0019867 outer membrane 1.5% (3/200) 4.06 0.000783 0.005956
GO:0031966 mitochondrial membrane 1.5% (3/200) 3.98 0.000911 0.006849
GO:0098588 bounding membrane of organelle 1.5% (3/200) 3.85 0.001204 0.008953
GO:0004386 helicase activity 2.5% (5/200) 2.65 0.001281 0.009418
GO:0003676 nucleic acid binding 12.5% (25/200) 0.94 0.001337 0.00972
GO:0000226 microtubule cytoskeleton organization 1.5% (3/200) 3.78 0.001371 0.009862
GO:0016043 cellular component organization 5.0% (10/200) 1.66 0.001405 0.009999
GO:0019773 proteasome core complex, alpha-subunit complex 1.0% (2/200) 5.14 0.00143 0.010073
GO:1901360 organic cyclic compound metabolic process 8.5% (17/200) 1.18 0.001476 0.010077
GO:0017076 purine nucleotide binding 14.0% (28/200) 0.87 0.001448 0.010091
GO:0031090 organelle membrane 2.0% (4/200) 3.03 0.001503 0.010153
GO:1901575 organic substance catabolic process 4.5% (9/200) 1.77 0.001474 0.010167
GO:0009059 macromolecule biosynthetic process 5.0% (10/200) 1.64 0.001584 0.010495
GO:0032555 purine ribonucleotide binding 13.5% (27/200) 0.88 0.00158 0.010568
GO:0043412 macromolecule modification 11.0% (22/200) 0.99 0.001743 0.011324
GO:0043168 anion binding 14.5% (29/200) 0.83 0.001727 0.011325
GO:0008186 ATP-dependent activity, acting on RNA 1.5% (3/200) 3.63 0.001848 0.011666
GO:0003724 RNA helicase activity 1.5% (3/200) 3.63 0.001848 0.011666
GO:0032553 ribonucleotide binding 13.5% (27/200) 0.87 0.001821 0.011713
GO:0009056 catabolic process 4.5% (9/200) 1.71 0.001894 0.01184
GO:0097367 carbohydrate derivative binding 13.5% (27/200) 0.85 0.002038 0.012623
GO:0090304 nucleic acid metabolic process 6.5% (13/200) 1.33 0.002236 0.013723
GO:1901135 carbohydrate derivative metabolic process 3.0% (6/200) 2.15 0.002538 0.015436
GO:0006139 nucleobase-containing compound metabolic process 7.5% (15/200) 1.2 0.002577 0.01553
GO:0016853 isomerase activity 2.5% (5/200) 2.39 0.002799 0.016718
GO:0006694 steroid biosynthetic process 1.0% (2/200) 4.63 0.002902 0.01718
GO:0071840 cellular component organization or biogenesis 5.0% (10/200) 1.51 0.003004 0.017628
GO:0006518 peptide metabolic process 3.5% (7/200) 1.89 0.003091 0.01798
GO:0030695 GTPase regulator activity 1.5% (3/200) 3.35 0.003231 0.018014
GO:0060589 nucleoside-triphosphatase regulator activity 1.5% (3/200) 3.35 0.003231 0.018014
GO:0006397 mRNA processing 2.0% (4/200) 2.73 0.003216 0.018235
GO:0016070 RNA metabolic process 5.0% (10/200) 1.5 0.00318 0.018339
GO:0016787 hydrolase activity 12.5% (25/200) 0.85 0.003209 0.018349
GO:0008202 steroid metabolic process 1.0% (2/200) 4.47 0.003626 0.019722
GO:0006505 GPI anchor metabolic process 1.0% (2/200) 4.47 0.003626 0.019722
GO:0006506 GPI anchor biosynthetic process 1.0% (2/200) 4.47 0.003626 0.019722
GO:0043047 single-stranded telomeric DNA binding 0.5% (1/200) 7.72 0.004741 0.021143
GO:0030620 U2 snRNA binding 0.5% (1/200) 7.72 0.004741 0.021143
GO:0106073 dolichyl pyrophosphate Glc2Man9GlcNAc2 alpha-1,2-glucosyltransferase activity 0.5% (1/200) 7.72 0.004741 0.021143
GO:0004735 pyrroline-5-carboxylate reductase activity 0.5% (1/200) 7.72 0.004741 0.021143
GO:0098847 sequence-specific single stranded DNA binding 0.5% (1/200) 7.72 0.004741 0.021143
GO:0003923 GPI-anchor transamidase activity 0.5% (1/200) 7.72 0.004741 0.021143
GO:0008909 isochorismate synthase activity 0.5% (1/200) 7.72 0.004741 0.021143
GO:0000781 chromosome, telomeric region 0.5% (1/200) 7.72 0.004741 0.021143
GO:0000974 Prp19 complex 0.5% (1/200) 7.72 0.004741 0.021143
GO:0009932 cell tip growth 0.5% (1/200) 7.72 0.004741 0.021143
GO:0009860 pollen tube growth 0.5% (1/200) 7.72 0.004741 0.021143
GO:0009846 pollen germination 0.5% (1/200) 7.72 0.004741 0.021143
GO:0060560 developmental growth involved in morphogenesis 0.5% (1/200) 7.72 0.004741 0.021143
GO:0050486 intramolecular hydroxytransferase activity 0.5% (1/200) 7.72 0.004741 0.021143
GO:0070985 transcription factor TFIIK complex 0.5% (1/200) 7.72 0.004741 0.021143
GO:0035494 SNARE complex disassembly 0.5% (1/200) 7.72 0.004741 0.021143
GO:0009826 unidimensional cell growth 0.5% (1/200) 7.72 0.004741 0.021143
GO:0048588 developmental cell growth 0.5% (1/200) 7.72 0.004741 0.021143
GO:0018279 protein N-linked glycosylation via asparagine 0.5% (1/200) 7.72 0.004741 0.021143
GO:0008353 RNA polymerase II CTD heptapeptide repeat kinase activity 0.5% (1/200) 7.72 0.004741 0.021143
GO:0004610 phosphoacetylglucosamine mutase activity 0.5% (1/200) 7.72 0.004741 0.021143
GO:0006491 N-glycan processing 0.5% (1/200) 7.72 0.004741 0.021143
GO:0006497 protein lipidation 1.0% (2/200) 4.4 0.004016 0.021495
GO:0006629 lipid metabolic process 4.0% (8/200) 1.62 0.004858 0.021525
GO:0016779 nucleotidyltransferase activity 2.0% (4/200) 2.64 0.004 0.021579
GO:1990234 transferase complex 2.0% (4/200) 2.62 0.004214 0.022374
GO:0005839 proteasome core complex 1.0% (2/200) 4.2 0.005298 0.023167
GO:0006820 monoatomic anion transport 1.0% (2/200) 4.2 0.005298 0.023167
GO:0043603 amide metabolic process 3.5% (7/200) 1.74 0.005373 0.023341
GO:0000398 mRNA splicing, via spliceosome 1.5% (3/200) 3.18 0.004549 0.023964
GO:0003697 single-stranded DNA binding 1.0% (2/200) 4.14 0.005762 0.024398
GO:0046483 heterocycle metabolic process 7.5% (15/200) 1.07 0.005726 0.024398
GO:0007010 cytoskeleton organization 1.5% (3/200) 3.06 0.005723 0.024541
GO:0046488 phosphatidylinositol metabolic process 1.5% (3/200) 3.06 0.005723 0.024541
GO:0005198 structural molecule activity 3.5% (7/200) 1.78 0.004697 0.024547
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 1.5% (3/200) 3.04 0.005934 0.024968
GO:0016071 mRNA metabolic process 2.0% (4/200) 2.45 0.006355 0.026571
GO:0140104 molecular carrier activity 1.0% (2/200) 4.02 0.006743 0.027846
GO:0009247 glycolipid biosynthetic process 1.0% (2/200) 4.02 0.006743 0.027846
GO:0000375 RNA splicing, via transesterification reactions 1.5% (3/200) 2.97 0.006826 0.028018
GO:0006396 RNA processing 3.0% (6/200) 1.83 0.007282 0.029346
GO:0030674 protein-macromolecule adaptor activity 1.0% (2/200) 3.97 0.00726 0.029436
GO:0006725 cellular aromatic compound metabolic process 7.5% (15/200) 1.03 0.007252 0.029582
GO:0036211 protein modification process 9.5% (19/200) 0.88 0.007701 0.03085
GO:0000413 protein peptidyl-prolyl isomerization 1.0% (2/200) 3.77 0.009499 0.032259
GO:0018208 peptidyl-proline modification 1.0% (2/200) 3.77 0.009499 0.032259
GO:0072583 clathrin-dependent endocytosis 0.5% (1/200) 6.72 0.009459 0.032451
GO:0018206 peptidyl-methionine modification 0.5% (1/200) 6.72 0.009459 0.032451
GO:0016633 galactonolactone dehydrogenase activity 0.5% (1/200) 6.72 0.009459 0.032451
GO:0000445 THO complex part of transcription export complex 0.5% (1/200) 6.72 0.009459 0.032451
GO:0034518 RNA cap binding complex 0.5% (1/200) 6.72 0.009459 0.032451
GO:0000339 RNA cap binding 0.5% (1/200) 6.72 0.009459 0.032451
GO:0006898 receptor-mediated endocytosis 0.5% (1/200) 6.72 0.009459 0.032451
GO:0005846 nuclear cap binding complex 0.5% (1/200) 6.72 0.009459 0.032451
GO:0031417 NatC complex 0.5% (1/200) 6.72 0.009459 0.032451
GO:0043014 alpha-tubulin binding 0.5% (1/200) 6.72 0.009459 0.032451
GO:0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity 0.5% (1/200) 6.72 0.009459 0.032451
GO:0043998 histone H2A acetyltransferase activity 0.5% (1/200) 6.72 0.009459 0.032451
GO:0030123 AP-3 adaptor complex 0.5% (1/200) 6.72 0.009459 0.032451
GO:0010485 histone H4 acetyltransferase activity 0.5% (1/200) 6.72 0.009459 0.032451
GO:0030122 AP-2 adaptor complex 0.5% (1/200) 6.72 0.009459 0.032451
GO:0017196 N-terminal peptidyl-methionine acetylation 0.5% (1/200) 6.72 0.009459 0.032451
GO:0016632 oxidoreductase activity, acting on the CH-CH group of donors, cytochrome as acceptor 0.5% (1/200) 6.72 0.009459 0.032451
GO:0004576 oligosaccharyl transferase activity 0.5% (1/200) 6.72 0.009459 0.032451
GO:0048589 developmental growth 0.5% (1/200) 6.72 0.009459 0.032451
GO:1903509 liposaccharide metabolic process 1.0% (2/200) 3.86 0.008346 0.032842
GO:0060090 molecular adaptor activity 1.0% (2/200) 3.86 0.008346 0.032842
GO:0006664 glycolipid metabolic process 1.0% (2/200) 3.86 0.008346 0.032842
GO:0005515 protein binding 15.5% (31/200) 0.63 0.00982 0.033179
GO:0003735 structural constituent of ribosome 3.0% (6/200) 1.73 0.009967 0.033508
GO:0018193 peptidyl-amino acid modification 1.5% (3/200) 2.85 0.008571 0.033531
GO:0046467 membrane lipid biosynthetic process 1.0% (2/200) 3.72 0.010101 0.03362
GO:0043043 peptide biosynthetic process 3.0% (6/200) 1.73 0.010088 0.033743
GO:0006412 translation 3.0% (6/200) 1.77 0.008931 0.03414
GO:0008308 voltage-gated monoatomic anion channel activity 1.0% (2/200) 3.81 0.008914 0.034273
GO:0005253 monoatomic anion channel activity 1.0% (2/200) 3.81 0.008914 0.034273
GO:0006661 phosphatidylinositol biosynthetic process 1.0% (2/200) 3.81 0.008914 0.034273
GO:0008380 RNA splicing 1.5% (3/200) 2.74 0.010554 0.034952
GO:0008610 lipid biosynthetic process 2.5% (5/200) 1.92 0.010747 0.035419
GO:0016757 glycosyltransferase activity 4.0% (8/200) 1.46 0.009346 0.035524
GO:0044249 cellular biosynthetic process 6.5% (13/200) 1.05 0.011044 0.036218
GO:0005524 ATP binding 10.0% (20/200) 0.8 0.011125 0.036305
GO:0030234 enzyme regulator activity 2.5% (5/200) 1.89 0.011701 0.038001
GO:0044237 cellular metabolic process 16.5% (33/200) 0.57 0.012884 0.041439
GO:0140640 catalytic activity, acting on a nucleic acid 4.0% (8/200) 1.38 0.012824 0.041444
GO:0015377 chloride:monoatomic cation symporter activity 0.5% (1/200) 6.14 0.014155 0.042087
GO:0005853 eukaryotic translation elongation factor 1 complex 0.5% (1/200) 6.14 0.014155 0.042087
GO:0006474 N-terminal protein amino acid acetylation 0.5% (1/200) 6.14 0.014155 0.042087
GO:0009100 glycoprotein metabolic process 0.5% (1/200) 6.14 0.014155 0.042087
GO:0000347 THO complex 0.5% (1/200) 6.14 0.014155 0.042087
GO:0000026 alpha-1,2-mannosyltransferase activity 0.5% (1/200) 6.14 0.014155 0.042087
GO:0032806 carboxy-terminal domain protein kinase complex 0.5% (1/200) 6.14 0.014155 0.042087
GO:0015294 solute:monoatomic cation symporter activity 0.5% (1/200) 6.14 0.014155 0.042087
GO:0015296 monoatomic anion:monoatomic cation symporter activity 0.5% (1/200) 6.14 0.014155 0.042087
GO:0006561 proline biosynthetic process 0.5% (1/200) 6.14 0.014155 0.042087
GO:0005675 transcription factor TFIIH holo complex 0.5% (1/200) 6.14 0.014155 0.042087
GO:0031414 N-terminal protein acetyltransferase complex 0.5% (1/200) 6.14 0.014155 0.042087
GO:0000220 vacuolar proton-transporting V-type ATPase, V0 domain 0.5% (1/200) 6.14 0.014155 0.042087
GO:0043604 amide biosynthetic process 3.0% (6/200) 1.64 0.013441 0.043023
GO:0022607 cellular component assembly 2.0% (4/200) 2.13 0.013716 0.043694
GO:0006643 membrane lipid metabolic process 1.0% (2/200) 3.44 0.014767 0.043714
GO:0006650 glycerophospholipid metabolic process 1.5% (3/200) 2.55 0.014887 0.043874
GO:0098772 molecular function regulator activity 2.5% (5/200) 1.8 0.015099 0.044303
GO:0015103 inorganic anion transmembrane transporter activity 1.0% (2/200) 3.47 0.014053 0.044347
GO:0140098 catalytic activity, acting on RNA 3.0% (6/200) 1.62 0.014042 0.044521
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (200) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms