Coexpression cluster: Cluster_304 (Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0005515 protein binding 29.63% (32/108) 1.56 0.0 5e-06
GO:0050794 regulation of cellular process 17.59% (19/108) 1.85 1e-06 0.000106
GO:0065007 biological regulation 18.52% (20/108) 1.81 1e-06 0.000115
GO:0050789 regulation of biological process 18.52% (20/108) 1.84 1e-06 0.000118
GO:0032991 protein-containing complex 12.96% (14/108) 2.22 2e-06 0.000141
GO:0005488 binding 48.15% (52/108) 0.82 3e-06 0.000177
GO:0031929 TOR signaling 1.85% (2/108) 8.02 1.9e-05 0.000819
GO:0031931 TORC1 complex 1.85% (2/108) 8.02 1.9e-05 0.000819
GO:0038201 TOR complex 1.85% (2/108) 8.02 1.9e-05 0.000819
GO:0140513 nuclear protein-containing complex 5.56% (6/108) 3.28 3.9e-05 0.00149
GO:0008270 zinc ion binding 8.33% (9/108) 2.34 7.9e-05 0.002714
GO:0003674 molecular_function 61.11% (66/108) 0.52 9.1e-05 0.002863
GO:0009889 regulation of biosynthetic process 11.11% (12/108) 1.71 0.000302 0.006735
GO:0031326 regulation of cellular biosynthetic process 11.11% (12/108) 1.71 0.000302 0.006735
GO:0031011 Ino80 complex 1.85% (2/108) 6.15 0.000352 0.007016
GO:0097346 INO80-type complex 1.85% (2/108) 6.15 0.000352 0.007016
GO:1903293 phosphatase complex 1.85% (2/108) 5.8 0.000579 0.007316
GO:0008287 protein serine/threonine phosphatase complex 1.85% (2/108) 5.8 0.000579 0.007316
GO:0003712 transcription coregulator activity 2.78% (3/108) 4.26 0.000527 0.007397
GO:0019222 regulation of metabolic process 11.11% (12/108) 1.63 0.000512 0.007465
GO:0010556 regulation of macromolecule biosynthetic process 11.11% (12/108) 1.72 0.000298 0.007537
GO:0060255 regulation of macromolecule metabolic process 11.11% (12/108) 1.65 0.000458 0.007547
GO:0031323 regulation of cellular metabolic process 11.11% (12/108) 1.65 0.000458 0.007547
GO:0090304 nucleic acid metabolic process 9.26% (10/108) 1.84 0.000501 0.007601
GO:0005575 cellular_component 18.52% (20/108) 1.15 0.00057 0.00772
GO:0006352 DNA-templated transcription initiation 2.78% (3/108) 4.36 0.000432 0.00779
GO:0008150 biological_process 44.44% (48/108) 0.62 0.000411 0.007798
GO:0007165 signal transduction 6.48% (7/108) 2.49 0.000268 0.0078
GO:0000159 protein phosphatase type 2A complex 1.85% (2/108) 5.91 0.000497 0.007851
GO:0010468 regulation of gene expression 11.11% (12/108) 1.72 0.000293 0.007924
GO:0070603 SWI/SNF superfamily-type complex 1.85% (2/108) 5.7 0.000667 0.008155
GO:0016070 RNA metabolic process 7.41% (8/108) 2.06 0.000693 0.008203
GO:0035556 intracellular signal transduction 3.7% (4/108) 3.27 0.000823 0.009453
GO:1904949 ATPase complex 1.85% (2/108) 5.52 0.000861 0.009599
GO:0034968 histone lysine methylation 1.85% (2/108) 5.36 0.001079 0.010762
GO:0016571 histone methylation 1.85% (2/108) 5.36 0.001079 0.010762
GO:0051171 regulation of nitrogen compound metabolic process 10.19% (11/108) 1.6 0.001045 0.011319
GO:0080090 regulation of primary metabolic process 10.19% (11/108) 1.59 0.001075 0.01132
GO:0018022 peptidyl-lysine methylation 1.85% (2/108) 5.15 0.00145 0.014095
GO:1902494 catalytic complex 4.63% (5/108) 2.6 0.001494 0.014154
GO:0019888 protein phosphatase regulator activity 1.85% (2/108) 5.09 0.001586 0.01466
GO:0019208 phosphatase regulator activity 1.85% (2/108) 5.02 0.001727 0.015223
GO:2001141 regulation of RNA biosynthetic process 9.26% (10/108) 1.59 0.001875 0.015452
GO:0006355 regulation of DNA-templated transcription 9.26% (10/108) 1.59 0.001875 0.015452
GO:0046914 transition metal ion binding 9.26% (10/108) 1.61 0.001713 0.015458
GO:0140097 catalytic activity, acting on DNA 3.7% (4/108) 2.96 0.001821 0.015684
GO:0051252 regulation of RNA metabolic process 9.26% (10/108) 1.58 0.001961 0.015815
GO:0019219 regulation of nucleobase-containing compound metabolic process 9.26% (10/108) 1.57 0.002073 0.016367
GO:0003964 RNA-directed DNA polymerase activity 0.93% (1/108) 8.61 0.00256 0.01764
GO:0042800 histone H3K4 methyltransferase activity 0.93% (1/108) 8.61 0.00256 0.01764
GO:0003721 telomerase RNA reverse transcriptase activity 0.93% (1/108) 8.61 0.00256 0.01764
GO:0016598 protein arginylation 0.93% (1/108) 8.61 0.00256 0.01764
GO:0006361 transcription initiation at RNA polymerase I promoter 0.93% (1/108) 8.61 0.00256 0.01764
GO:0004057 arginyl-tRNA--protein transferase activity 0.93% (1/108) 8.61 0.00256 0.01764
GO:0001181 RNA polymerase I general transcription initiation factor activity 0.93% (1/108) 8.61 0.00256 0.01764
GO:0006139 nucleobase-containing compound metabolic process 9.26% (10/108) 1.5 0.002915 0.01973
GO:0016592 mediator complex 1.85% (2/108) 4.52 0.003453 0.022957
GO:0006357 regulation of transcription by RNA polymerase II 2.78% (3/108) 3.31 0.003517 0.022982
GO:0006479 protein methylation 1.85% (2/108) 4.44 0.003864 0.02441
GO:0008213 protein alkylation 1.85% (2/108) 4.44 0.003864 0.02441
GO:0018205 peptidyl-lysine modification 1.85% (2/108) 4.4 0.004078 0.02534
GO:0009890 negative regulation of biosynthetic process 2.78% (3/108) 3.11 0.005227 0.027135
GO:0010558 negative regulation of macromolecule biosynthetic process 2.78% (3/108) 3.11 0.005227 0.027135
GO:0031327 negative regulation of cellular biosynthetic process 2.78% (3/108) 3.11 0.005227 0.027135
GO:0046483 heterocycle metabolic process 9.26% (10/108) 1.37 0.005366 0.027482
GO:0071339 MLL1 complex 0.93% (1/108) 7.61 0.005113 0.027685
GO:0031087 deadenylation-independent decapping of nuclear-transcribed mRNA 0.93% (1/108) 7.61 0.005113 0.027685
GO:0031499 TRAMP complex 0.93% (1/108) 7.61 0.005113 0.027685
GO:0044665 MLL1/2 complex 0.93% (1/108) 7.61 0.005113 0.027685
GO:0002151 G-quadruplex RNA binding 0.93% (1/108) 7.61 0.005113 0.027685
GO:0140938 histone H3 methyltransferase activity 0.93% (1/108) 7.61 0.005113 0.027685
GO:0140223 general transcription initiation factor activity 0.93% (1/108) 7.61 0.005113 0.027685
GO:0042054 histone methyltransferase activity 0.93% (1/108) 7.61 0.005113 0.027685
GO:0046872 metal ion binding 11.11% (12/108) 1.2 0.005929 0.029963
GO:0140658 ATP-dependent chromatin remodeler activity 1.85% (2/108) 4.25 0.004988 0.030492
GO:0006725 cellular aromatic compound metabolic process 9.26% (10/108) 1.34 0.006442 0.032126
GO:0140640 catalytic activity, acting on a nucleic acid 5.56% (6/108) 1.85 0.006653 0.032749
GO:0031324 negative regulation of cellular metabolic process 2.78% (3/108) 2.96 0.006975 0.033889
GO:0009892 negative regulation of metabolic process 2.78% (3/108) 2.94 0.007231 0.034255
GO:0010605 negative regulation of macromolecule metabolic process 2.78% (3/108) 2.94 0.007231 0.034255
GO:1901360 organic cyclic compound metabolic process 9.26% (10/108) 1.31 0.007331 0.034304
GO:0043169 cation binding 11.11% (12/108) 1.16 0.007624 0.035236
GO:0016570 histone modification 1.85% (2/108) 3.88 0.008217 0.037521
GO:0006900 vesicle budding from membrane 0.93% (1/108) 6.61 0.010201 0.044438
GO:0051568 histone H3-K4 methylation 0.93% (1/108) 6.61 0.010201 0.044438
GO:0090114 COPII-coated vesicle budding 0.93% (1/108) 6.61 0.010201 0.044438
GO:0140535 intracellular protein-containing complex 2.78% (3/108) 2.76 0.010099 0.045567
GO:0005667 transcription regulator complex 1.85% (2/108) 3.66 0.011109 0.047844
GO:0048523 negative regulation of cellular process 2.78% (3/108) 2.69 0.011407 0.048574
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (108) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms