Coexpression cluster: Cluster_238 (Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0005488 binding 49.41% (42/85) 0.86 1.1e-05 0.003871
GO:0042752 regulation of circadian rhythm 2.35% (2/85) 6.96 0.000111 0.019725
GO:0009987 cellular process 32.94% (28/85) 0.97 0.000215 0.025351
GO:0061659 ubiquitin-like protein ligase activity 3.53% (3/85) 3.71 0.001615 0.033635
GO:0016226 iron-sulfur cluster assembly 2.35% (2/85) 5.37 0.001076 0.034619
GO:0031163 metallo-sulfur cluster assembly 2.35% (2/85) 5.37 0.001076 0.034619
GO:0008150 biological_process 44.71% (38/85) 0.63 0.001371 0.034663
GO:0097367 carbohydrate derivative binding 17.65% (15/85) 1.24 0.001469 0.034666
GO:0005674 transcription factor TFIIF complex 1.18% (1/85) 7.96 0.004025 0.034757
GO:0106035 protein maturation by [4Fe-4S] cluster transfer 1.18% (1/85) 7.96 0.004025 0.034757
GO:1905897 regulation of response to endoplasmic reticulum stress 1.18% (1/85) 7.96 0.004025 0.034757
GO:1905898 positive regulation of response to endoplasmic reticulum stress 1.18% (1/85) 7.96 0.004025 0.034757
GO:1903052 positive regulation of proteolysis involved in protein catabolic process 1.18% (1/85) 7.96 0.004025 0.034757
GO:1904292 regulation of ERAD pathway 1.18% (1/85) 7.96 0.004025 0.034757
GO:1904294 positive regulation of ERAD pathway 1.18% (1/85) 7.96 0.004025 0.034757
GO:0045862 positive regulation of proteolysis 1.18% (1/85) 7.96 0.004025 0.034757
GO:0045732 positive regulation of protein catabolic process 1.18% (1/85) 7.96 0.004025 0.034757
GO:1901800 positive regulation of proteasomal protein catabolic process 1.18% (1/85) 7.96 0.004025 0.034757
GO:0009896 positive regulation of catabolic process 1.18% (1/85) 7.96 0.004025 0.034757
GO:0061630 ubiquitin protein ligase activity 3.53% (3/85) 3.72 0.001575 0.034847
GO:1901363 heterocyclic compound binding 17.65% (15/85) 1.08 0.00434 0.034915
GO:0036211 protein modification process 12.94% (11/85) 1.33 0.004199 0.035395
GO:0050789 regulation of biological process 12.94% (11/85) 1.32 0.004316 0.035535
GO:0051539 4 iron, 4 sulfur cluster binding 2.35% (2/85) 4.96 0.001913 0.035643
GO:0032555 purine ribonucleotide binding 17.65% (15/85) 1.27 0.001228 0.036239
GO:0003682 chromatin binding 2.35% (2/85) 4.87 0.002158 0.03638
GO:0036094 small molecule binding 17.65% (15/85) 1.07 0.004633 0.036448
GO:0051536 iron-sulfur cluster binding 3.53% (3/85) 3.99 0.000927 0.036456
GO:0051540 metal cluster binding 3.53% (3/85) 3.99 0.000927 0.036456
GO:0035639 purine ribonucleoside triphosphate binding 16.47% (14/85) 1.41 0.000723 0.036539
GO:0032553 ribonucleotide binding 17.65% (15/85) 1.25 0.001357 0.036953
GO:0044237 cellular metabolic process 22.35% (19/85) 1.01 0.002103 0.037225
GO:0017076 purine nucleotide binding 17.65% (15/85) 1.2 0.001903 0.037435
GO:0022607 cellular component assembly 4.71% (4/85) 3.36 0.000644 0.037976
GO:2000022 regulation of jasmonic acid mediated signaling pathway 1.18% (1/85) 7.37 0.006032 0.038132
GO:0072598 protein localization to chloroplast 1.18% (1/85) 7.37 0.006032 0.038132
GO:0009863 salicylic acid mediated signaling pathway 1.18% (1/85) 7.37 0.006032 0.038132
GO:0072596 establishment of protein localization to chloroplast 1.18% (1/85) 7.37 0.006032 0.038132
GO:0042256 cytosolic ribosome assembly 1.18% (1/85) 7.37 0.006032 0.038132
GO:0045036 protein targeting to chloroplast 1.18% (1/85) 7.37 0.006032 0.038132
GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway 1.18% (1/85) 7.37 0.006032 0.038132
GO:0004534 5'-3' RNA exonuclease activity 1.18% (1/85) 7.37 0.006032 0.038132
GO:0043412 macromolecule modification 14.12% (12/85) 1.35 0.002484 0.038226
GO:0003924 GTPase activity 3.53% (3/85) 3.11 0.005232 0.039406
GO:0097159 organic cyclic compound binding 28.24% (24/85) 0.84 0.002451 0.039436
GO:0065007 biological regulation 12.94% (11/85) 1.29 0.005176 0.039834
GO:0006646 phosphatidylethanolamine biosynthetic process 1.18% (1/85) 6.96 0.008035 0.040061
GO:0046337 phosphatidylethanolamine metabolic process 1.18% (1/85) 6.96 0.008035 0.040061
GO:0031969 chloroplast membrane 1.18% (1/85) 6.96 0.008035 0.040061
GO:0000910 cytokinesis 1.18% (1/85) 6.96 0.008035 0.040061
GO:0000911 cytokinesis by cell plate formation 1.18% (1/85) 6.96 0.008035 0.040061
GO:0097428 protein maturation by iron-sulfur cluster transfer 1.18% (1/85) 6.96 0.008035 0.040061
GO:0009707 chloroplast outer membrane 1.18% (1/85) 6.96 0.008035 0.040061
GO:0004306 ethanolamine-phosphate cytidylyltransferase activity 1.18% (1/85) 6.96 0.008035 0.040061
GO:0042255 ribosome assembly 1.18% (1/85) 6.96 0.008035 0.040061
GO:0009527 plastid outer membrane 1.18% (1/85) 6.96 0.008035 0.040061
GO:0140658 ATP-dependent chromatin remodeler activity 2.35% (2/85) 4.6 0.003126 0.040982
GO:1901265 nucleoside phosphate binding 17.65% (15/85) 1.13 0.003015 0.041055
GO:0000166 nucleotide binding 17.65% (15/85) 1.13 0.003015 0.041055
GO:0140096 catalytic activity, acting on a protein 16.47% (14/85) 1.2 0.002789 0.041144
GO:0003674 molecular_function 61.18% (52/85) 0.52 0.000467 0.041337
GO:0005525 GTP binding 3.53% (3/85) 2.84 0.008673 0.042056
GO:0032561 guanyl ribonucleotide binding 3.53% (3/85) 2.84 0.008673 0.042056
GO:0006367 transcription initiation at RNA polymerase II promoter 2.35% (2/85) 5.79 0.000601 0.042553
GO:0043168 anion binding 17.65% (15/85) 1.12 0.003388 0.042837
GO:0005524 ATP binding 12.94% (11/85) 1.18 0.009093 0.043498
GO:0005667 transcription regulator complex 2.35% (2/85) 4.0 0.007014 0.043559
GO:0006796 phosphate-containing compound metabolic process 11.76% (10/85) 1.3 0.007261 0.043564
GO:0006793 phosphorus metabolic process 11.76% (10/85) 1.3 0.007408 0.043704
GO:0032774 RNA biosynthetic process 3.53% (3/85) 2.94 0.007172 0.043773
GO:0090575 RNA polymerase II transcription regulator complex 2.35% (2/85) 4.5 0.003592 0.043847
GO:0006352 DNA-templated transcription initiation 2.35% (2/85) 4.12 0.005958 0.043942
GO:0019001 guanyl nucleotide binding 3.53% (3/85) 2.8 0.009368 0.044216
GO:0048583 regulation of response to stimulus 2.35% (2/85) 3.73 0.01012 0.044781
GO:0061136 regulation of proteasomal protein catabolic process 1.18% (1/85) 6.63 0.010034 0.044961
GO:1903050 regulation of proteolysis involved in protein catabolic process 1.18% (1/85) 6.63 0.010034 0.044961
GO:0006366 transcription by RNA polymerase II 1.18% (1/85) 6.63 0.010034 0.044961
GO:0030162 regulation of proteolysis 1.18% (1/85) 6.63 0.010034 0.044961
GO:0140097 catalytic activity, acting on DNA 3.53% (3/85) 2.89 0.007901 0.045852
GO:0043167 ion binding 23.53% (20/85) 0.9 0.003943 0.046525
GO:0080111 DNA demethylation 1.18% (1/85) 6.37 0.012028 0.049512
GO:0008409 5'-3' exonuclease activity 1.18% (1/85) 6.37 0.012028 0.049512
GO:0035510 DNA dealkylation 1.18% (1/85) 6.37 0.012028 0.049512
GO:0035514 DNA demethylase activity 1.18% (1/85) 6.37 0.012028 0.049512
GO:0016310 phosphorylation 9.41% (8/85) 1.37 0.012232 0.049773
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (85) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms