Coexpression cluster: Cluster_223 (Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:1901566 organonitrogen compound biosynthetic process 24.62% (16/65) 3.74 0.0 0.0
GO:0044237 cellular metabolic process 49.23% (32/65) 2.15 0.0 0.0
GO:0044271 cellular nitrogen compound biosynthetic process 24.62% (16/65) 3.62 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 32.31% (21/65) 2.86 0.0 0.0
GO:0009987 cellular process 56.92% (37/65) 1.76 0.0 0.0
GO:0044249 cellular biosynthetic process 27.69% (18/65) 3.14 0.0 0.0
GO:0009058 biosynthetic process 29.23% (19/65) 2.98 0.0 0.0
GO:0043603 amide metabolic process 18.46% (12/65) 4.14 0.0 0.0
GO:1901576 organic substance biosynthetic process 27.69% (18/65) 3.03 0.0 0.0
GO:0006412 translation 16.92% (11/65) 4.26 0.0 0.0
GO:0043043 peptide biosynthetic process 16.92% (11/65) 4.22 0.0 0.0
GO:0003735 structural constituent of ribosome 16.92% (11/65) 4.23 0.0 0.0
GO:0006518 peptide metabolic process 16.92% (11/65) 4.16 0.0 0.0
GO:0043604 amide biosynthetic process 16.92% (11/65) 4.13 0.0 0.0
GO:0005198 structural molecule activity 16.92% (11/65) 4.05 0.0 0.0
GO:0009059 macromolecule biosynthetic process 18.46% (12/65) 3.52 0.0 0.0
GO:0006807 nitrogen compound metabolic process 43.08% (28/65) 1.77 0.0 0.0
GO:0005840 ribosome 13.85% (9/65) 4.12 0.0 0.0
GO:0008152 metabolic process 49.23% (32/65) 1.53 0.0 0.0
GO:0071704 organic substance metabolic process 46.15% (30/65) 1.53 0.0 0.0
GO:0043232 intracellular non-membrane-bounded organelle 13.85% (9/65) 3.74 0.0 0.0
GO:0043228 non-membrane-bounded organelle 13.85% (9/65) 3.74 0.0 0.0
GO:1901564 organonitrogen compound metabolic process 35.38% (23/65) 1.81 0.0 1e-06
GO:0044238 primary metabolic process 43.08% (28/65) 1.53 0.0 1e-06
GO:0008150 biological_process 60.0% (39/65) 1.05 0.0 3e-06
GO:0015399 primary active transmembrane transporter activity 9.23% (6/65) 4.37 0.0 7e-06
GO:0003674 molecular_function 72.31% (47/65) 0.76 1e-06 1.8e-05
GO:0009640 photomorphogenesis 3.08% (2/65) 9.34 2e-06 3e-05
GO:0022804 active transmembrane transporter activity 9.23% (6/65) 3.69 7e-06 9.3e-05
GO:0050136 NADH dehydrogenase (quinone) activity 4.62% (3/65) 6.23 9e-06 0.000104
GO:0008137 NADH dehydrogenase (ubiquinone) activity 4.62% (3/65) 6.23 9e-06 0.000104
GO:0015453 oxidoreduction-driven active transmembrane transporter activity 4.62% (3/65) 6.02 1.4e-05 0.000152
GO:0003955 NAD(P)H dehydrogenase (quinone) activity 4.62% (3/65) 6.02 1.4e-05 0.000152
GO:0003954 NADH dehydrogenase activity 4.62% (3/65) 5.97 1.5e-05 0.000154
GO:0043229 intracellular organelle 13.85% (9/65) 2.62 1.5e-05 0.000155
GO:0043226 organelle 13.85% (9/65) 2.62 1.5e-05 0.000155
GO:0044391 ribosomal subunit 6.15% (4/65) 4.71 1.7e-05 0.00017
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor 4.62% (3/65) 5.84 2e-05 0.000188
GO:0043170 macromolecule metabolic process 30.77% (20/65) 1.44 2e-05 0.000193
GO:0009435 NAD biosynthetic process 3.08% (2/65) 7.76 3.5e-05 0.000318
GO:0009396 folic acid-containing compound biosynthetic process 3.08% (2/65) 7.34 6.5e-05 0.000578
GO:0015934 large ribosomal subunit 4.62% (3/65) 5.23 7.3e-05 0.000633
GO:0046483 heterocycle metabolic process 15.38% (10/65) 2.11 9.8e-05 0.000831
GO:0019359 nicotinamide nucleotide biosynthetic process 3.08% (2/65) 7.02 0.000104 0.000844
GO:0042559 pteridine-containing compound biosynthetic process 3.08% (2/65) 7.02 0.000104 0.000844
GO:0016651 oxidoreductase activity, acting on NAD(P)H 4.62% (3/65) 5.0 0.000118 0.000933
GO:0006725 cellular aromatic compound metabolic process 15.38% (10/65) 2.07 0.000122 0.000948
GO:0019363 pyridine nucleotide biosynthetic process 3.08% (2/65) 6.88 0.000127 0.000966
GO:1901360 organic cyclic compound metabolic process 15.38% (10/65) 2.04 0.000143 0.001063
GO:0009639 response to red or far red light 3.08% (2/65) 6.64 0.00018 0.001313
GO:1990904 ribonucleoprotein complex 6.15% (4/65) 3.76 0.000227 0.001617
GO:0019674 NAD metabolic process 3.08% (2/65) 6.44 0.000242 0.001696
GO:0019538 protein metabolic process 23.08% (15/65) 1.45 0.000265 0.001817
GO:0006760 folic acid-containing compound metabolic process 3.08% (2/65) 6.34 0.000277 0.001831
GO:0042398 cellular modified amino acid biosynthetic process 3.08% (2/65) 6.34 0.000277 0.001831
GO:0042558 pteridine-containing compound metabolic process 3.08% (2/65) 6.17 0.000352 0.002288
GO:0009791 post-embryonic development 3.08% (2/65) 6.09 0.000393 0.002509
GO:0140359 ABC-type transporter activity 4.62% (3/65) 4.34 0.00045 0.002825
GO:0110165 cellular anatomical entity 18.46% (12/65) 1.58 0.000551 0.003397
GO:0072525 pyridine-containing compound biosynthetic process 3.08% (2/65) 5.82 0.000579 0.003513
GO:0018130 heterocycle biosynthetic process 7.69% (5/65) 2.87 0.000614 0.003607
GO:0019438 aromatic compound biosynthetic process 7.69% (5/65) 2.88 0.000608 0.003629
GO:0006575 cellular modified amino acid metabolic process 3.08% (2/65) 5.76 0.000631 0.003646
GO:0097159 organic cyclic compound binding 32.31% (21/65) 1.04 0.000689 0.00392
GO:0005575 cellular_component 21.54% (14/65) 1.37 0.0008 0.004482
GO:0005488 binding 46.15% (30/65) 0.76 0.000826 0.004556
GO:1901362 organic cyclic compound biosynthetic process 7.69% (5/65) 2.74 0.000939 0.005099
GO:0022857 transmembrane transporter activity 10.77% (7/65) 2.12 0.001101 0.005893
GO:0051539 4 iron, 4 sulfur cluster binding 3.08% (2/65) 5.34 0.001125 0.005936
GO:0006139 nucleobase-containing compound metabolic process 12.31% (8/65) 1.91 0.001246 0.006481
GO:0003723 RNA binding 9.23% (6/65) 2.32 0.00129 0.006524
GO:0005215 transporter activity 10.77% (7/65) 2.09 0.001275 0.006538
GO:0009416 response to light stimulus 3.08% (2/65) 5.21 0.001346 0.00671
GO:0009055 electron transfer activity 4.62% (3/65) 3.77 0.001428 0.006931
GO:0009314 response to radiation 3.08% (2/65) 5.17 0.001424 0.007002
GO:0001716 L-amino-acid oxidase activity 1.54% (1/65) 9.34 0.001541 0.007099
GO:0003934 GTP cyclohydrolase I activity 1.54% (1/65) 9.34 0.001541 0.007099
GO:0008987 quinolinate synthetase A activity 1.54% (1/65) 9.34 0.001541 0.007099
GO:0008734 L-aspartate oxidase activity 1.54% (1/65) 9.34 0.001541 0.007099
GO:0019843 rRNA binding 3.08% (2/65) 5.09 0.001585 0.007213
GO:0042626 ATPase-coupled transmembrane transporter activity 4.62% (3/65) 3.69 0.001669 0.007499
GO:0044281 small molecule metabolic process 9.23% (6/65) 2.22 0.001842 0.008177
GO:0003913 DNA photolyase activity 1.54% (1/65) 8.34 0.003079 0.013503
GO:0006163 purine nucleotide metabolic process 4.62% (3/65) 3.35 0.003246 0.014067
GO:0019637 organophosphate metabolic process 6.15% (4/65) 2.69 0.00351 0.01503
GO:0006796 phosphate-containing compound metabolic process 13.85% (9/65) 1.54 0.003629 0.015358
GO:0006793 phosphorus metabolic process 13.85% (9/65) 1.53 0.0037 0.015482
GO:0072521 purine-containing compound metabolic process 4.62% (3/65) 3.25 0.003904 0.016147
GO:0019377 glycolipid catabolic process 1.54% (1/65) 7.76 0.004615 0.016799
GO:0006687 glycosphingolipid metabolic process 1.54% (1/65) 7.76 0.004615 0.016799
GO:0006680 glucosylceramide catabolic process 1.54% (1/65) 7.76 0.004615 0.016799
GO:0072596 establishment of protein localization to chloroplast 1.54% (1/65) 7.76 0.004615 0.016799
GO:0004348 glucosylceramidase activity 1.54% (1/65) 7.76 0.004615 0.016799
GO:0006677 glycosylceramide metabolic process 1.54% (1/65) 7.76 0.004615 0.016799
GO:0072598 protein localization to chloroplast 1.54% (1/65) 7.76 0.004615 0.016799
GO:0006678 glucosylceramide metabolic process 1.54% (1/65) 7.76 0.004615 0.016799
GO:0046654 tetrahydrofolate biosynthetic process 1.54% (1/65) 7.76 0.004615 0.016799
GO:0046477 glycosylceramide catabolic process 1.54% (1/65) 7.76 0.004615 0.016799
GO:0046479 glycosphingolipid catabolic process 1.54% (1/65) 7.76 0.004615 0.016799
GO:0045036 protein targeting to chloroplast 1.54% (1/65) 7.76 0.004615 0.016799
GO:0009117 nucleotide metabolic process 4.62% (3/65) 3.15 0.004817 0.017359
GO:0006753 nucleoside phosphate metabolic process 4.62% (3/65) 3.13 0.005001 0.017846
GO:0004042 acetyl-CoA:L-glutamate N-acetyltransferase activity 1.54% (1/65) 7.34 0.006149 0.018967
GO:0046514 ceramide catabolic process 1.54% (1/65) 7.34 0.006149 0.018967
GO:0032039 integrator complex 1.54% (1/65) 7.34 0.006149 0.018967
GO:0030149 sphingolipid catabolic process 1.54% (1/65) 7.34 0.006149 0.018967
GO:0009707 chloroplast outer membrane 1.54% (1/65) 7.34 0.006149 0.018967
GO:0120252 hydrocarbon metabolic process 1.54% (1/65) 7.34 0.006149 0.018967
GO:0009527 plastid outer membrane 1.54% (1/65) 7.34 0.006149 0.018967
GO:0031969 chloroplast membrane 1.54% (1/65) 7.34 0.006149 0.018967
GO:0009685 gibberellin metabolic process 1.54% (1/65) 7.34 0.006149 0.018967
GO:0009686 gibberellin biosynthetic process 1.54% (1/65) 7.34 0.006149 0.018967
GO:0010241 ent-kaurene oxidation to kaurenoic acid 1.54% (1/65) 7.34 0.006149 0.018967
GO:0003933 GTP cyclohydrolase activity 1.54% (1/65) 7.34 0.006149 0.018967
GO:0033331 ent-kaurene metabolic process 1.54% (1/65) 7.34 0.006149 0.018967
GO:0042214 terpene metabolic process 1.54% (1/65) 7.34 0.006149 0.018967
GO:0052615 ent-kaurene oxidase activity 1.54% (1/65) 7.34 0.006149 0.018967
GO:0046466 membrane lipid catabolic process 1.54% (1/65) 7.34 0.006149 0.018967
GO:0032501 multicellular organismal process 3.08% (2/65) 4.0 0.007002 0.021418
GO:0046496 nicotinamide nucleotide metabolic process 3.08% (2/65) 3.98 0.00717 0.021749
GO:0019362 pyridine nucleotide metabolic process 3.08% (2/65) 3.97 0.00734 0.02208
GO:0016073 snRNA metabolic process 1.54% (1/65) 7.02 0.00768 0.022728
GO:0016180 snRNA processing 1.54% (1/65) 7.02 0.00768 0.022728
GO:0055086 nucleobase-containing small molecule metabolic process 4.62% (3/65) 2.87 0.008201 0.024073
GO:0051536 iron-sulfur cluster binding 3.08% (2/65) 3.79 0.009326 0.025913
GO:0006164 purine nucleotide biosynthetic process 3.08% (2/65) 3.79 0.009326 0.025913
GO:0051540 metal cluster binding 3.08% (2/65) 3.79 0.009326 0.025913
GO:0009628 response to abiotic stimulus 3.08% (2/65) 3.82 0.008949 0.026058
GO:0072524 pyridine-containing compound metabolic process 3.08% (2/65) 3.77 0.009517 0.026244
GO:0019238 cyclohydrolase activity 1.54% (1/65) 6.76 0.009209 0.026395
GO:0042138 meiotic DNA double-strand break formation 1.54% (1/65) 6.76 0.009209 0.026395
GO:0140657 ATP-dependent activity 6.15% (4/65) 2.27 0.009654 0.026422
GO:0032991 protein-containing complex 9.23% (6/65) 1.73 0.009314 0.026486
GO:0061982 meiosis I cell cycle process 1.54% (1/65) 6.53 0.010736 0.029163
GO:0072522 purine-containing compound biosynthetic process 3.08% (2/65) 3.61 0.011734 0.031637
GO:0046653 tetrahydrofolate metabolic process 1.54% (1/65) 6.34 0.01226 0.032339
GO:0015969 guanosine tetraphosphate metabolic process 1.54% (1/65) 6.34 0.01226 0.032339
GO:0034035 purine ribonucleoside bisphosphate metabolic process 1.54% (1/65) 6.34 0.01226 0.032339
GO:0043167 ion binding 23.08% (15/65) 0.87 0.013841 0.035986
GO:0000285 1-phosphatidylinositol-3-phosphate 5-kinase activity 1.54% (1/65) 6.17 0.013782 0.036092
GO:1901293 nucleoside phosphate biosynthetic process 3.08% (2/65) 3.41 0.015319 0.038724
GO:0009165 nucleotide biosynthetic process 3.08% (2/65) 3.41 0.015319 0.038724
GO:0008131 primary amine oxidase activity 1.54% (1/65) 6.02 0.015302 0.039225
GO:0006672 ceramide metabolic process 1.54% (1/65) 6.02 0.015302 0.039225
GO:0034654 nucleobase-containing compound biosynthetic process 4.62% (3/65) 2.48 0.016676 0.041862
GO:0006259 DNA metabolic process 4.62% (3/65) 2.48 0.016929 0.042207
GO:0044255 cellular lipid metabolic process 4.62% (3/65) 2.44 0.017965 0.044483
GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor 1.54% (1/65) 5.76 0.018335 0.045094
GO:0035639 purine ribonucleoside triphosphate binding 13.85% (9/65) 1.16 0.018654 0.04557
GO:0003824 catalytic activity 33.85% (22/65) 0.62 0.018968 0.046028
GO:0006665 sphingolipid metabolic process 1.54% (1/65) 5.64 0.019848 0.04753
GO:0006526 arginine biosynthetic process 1.54% (1/65) 5.64 0.019848 0.04753
GO:0016775 phosphotransferase activity, nitrogenous group as acceptor 1.54% (1/65) 5.53 0.021358 0.049205
GO:0016459 myosin complex 1.54% (1/65) 5.53 0.021358 0.049205
GO:0004673 protein histidine kinase activity 1.54% (1/65) 5.53 0.021358 0.049205
GO:0000155 phosphorelay sensor kinase activity 1.54% (1/65) 5.53 0.021358 0.049205
GO:0140299 small molecule sensor activity 1.54% (1/65) 5.53 0.021358 0.049205
GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines 1.54% (1/65) 5.53 0.021358 0.049205
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (65) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms