Coexpression cluster: Cluster_272 (Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0005488 binding 55.1% (27/49) 1.02 3.5e-05 0.001493
GO:0016071 mRNA metabolic process 8.16% (4/49) 4.48 3.2e-05 0.001636
GO:0004386 helicase activity 8.16% (4/49) 4.36 4.5e-05 0.001641
GO:0003724 RNA helicase activity 6.12% (3/49) 5.66 2.9e-05 0.001894
GO:0008186 ATP-dependent activity, acting on RNA 6.12% (3/49) 5.66 2.9e-05 0.001894
GO:0006397 mRNA processing 8.16% (4/49) 4.76 1.5e-05 0.00192
GO:0097159 organic cyclic compound binding 38.78% (19/49) 1.3 8.3e-05 0.00238
GO:0000398 mRNA splicing, via spliceosome 6.12% (3/49) 5.21 7.6e-05 0.002451
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 6.12% (3/49) 5.07 0.000101 0.002605
GO:0003676 nucleic acid binding 26.53% (13/49) 2.03 1e-05 0.002674
GO:0000375 RNA splicing, via transesterification reactions 6.12% (3/49) 4.99 0.000118 0.002753
GO:0008380 RNA splicing 6.12% (3/49) 4.76 0.000189 0.004048
GO:0046483 heterocycle metabolic process 16.33% (8/49) 2.19 0.000318 0.006294
GO:0006725 cellular aromatic compound metabolic process 16.33% (8/49) 2.15 0.000381 0.006993
GO:1901360 organic cyclic compound metabolic process 16.33% (8/49) 2.13 0.000433 0.007415
GO:0006396 RNA processing 8.16% (4/49) 3.27 0.000783 0.012575
GO:0006139 nucleobase-containing compound metabolic process 14.29% (7/49) 2.13 0.001024 0.015483
GO:0006408 snRNA export from nucleus 2.04% (1/49) 9.75 0.001161 0.016583
GO:0090304 nucleic acid metabolic process 12.24% (6/49) 2.24 0.00159 0.021509
GO:0051030 snRNA transport 2.04% (1/49) 8.75 0.002322 0.022098
GO:0017070 U6 snRNA binding 2.04% (1/49) 8.75 0.002322 0.022098
GO:0030623 U5 snRNA binding 2.04% (1/49) 8.75 0.002322 0.022098
GO:0000244 spliceosomal tri-snRNP complex assembly 2.04% (1/49) 8.75 0.002322 0.022098
GO:0097064 ncRNA export from nucleus 2.04% (1/49) 8.75 0.002322 0.022098
GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity 2.04% (1/49) 8.75 0.002322 0.022098
GO:0016070 RNA metabolic process 10.2% (5/49) 2.53 0.00172 0.022107
GO:0009987 cellular process 34.69% (17/49) 1.04 0.001893 0.023162
GO:0140513 nuclear protein-containing complex 6.12% (3/49) 3.42 0.002827 0.025947
GO:0140657 ATP-dependent activity 8.16% (4/49) 2.68 0.003543 0.029376
GO:0070939 Dsl1/NZR complex 2.04% (1/49) 8.16 0.00348 0.029815
GO:0005672 transcription factor TFIIA complex 2.04% (1/49) 8.16 0.00348 0.029815
GO:0017069 snRNA binding 2.04% (1/49) 7.75 0.004638 0.037248
GO:0004372 glycine hydroxymethyltransferase activity 2.04% (1/49) 7.43 0.005794 0.039186
GO:0006545 glycine biosynthetic process 2.04% (1/49) 7.43 0.005794 0.039186
GO:0019264 glycine biosynthetic process from serine 2.04% (1/49) 7.43 0.005794 0.039186
GO:0035999 tetrahydrofolate interconversion 2.04% (1/49) 7.43 0.005794 0.039186
GO:0044237 cellular metabolic process 24.49% (12/49) 1.14 0.006163 0.04061
GO:0043167 ion binding 26.53% (13/49) 1.07 0.006443 0.041396
GO:0140640 catalytic activity, acting on a nucleic acid 8.16% (4/49) 2.41 0.006837 0.042854
GO:0034641 cellular nitrogen compound metabolic process 14.29% (7/49) 1.68 0.0057 0.043086
GO:0003677 DNA binding 12.24% (6/49) 1.88 0.005556 0.043268
GO:0006730 one-carbon metabolic process 2.04% (1/49) 6.94 0.008102 0.047325
GO:0097526 spliceosomal tri-snRNP complex 2.04% (1/49) 6.94 0.008102 0.047325
GO:0046540 U4/U6 x U5 tri-snRNP complex 2.04% (1/49) 6.94 0.008102 0.047325
GO:0008270 zinc ion binding 8.16% (4/49) 2.31 0.008651 0.049406
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (49) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms