Coexpression cluster: Cluster_139 (Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0044271 cellular nitrogen compound biosynthetic process 29.85% (20/67) 3.9 0.0 0.0
GO:1901566 organonitrogen compound biosynthetic process 25.37% (17/67) 3.79 0.0 0.0
GO:0044249 cellular biosynthetic process 29.85% (20/67) 3.25 0.0 0.0
GO:1901576 organic substance biosynthetic process 29.85% (20/67) 3.13 0.0 0.0
GO:0009058 biosynthetic process 29.85% (20/67) 3.01 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 31.34% (21/67) 2.82 0.0 0.0
GO:0009059 macromolecule biosynthetic process 20.9% (14/67) 3.7 0.0 0.0
GO:0015453 oxidoreduction-driven active transmembrane transporter activity 8.96% (6/67) 6.98 0.0 0.0
GO:0043043 peptide biosynthetic process 16.42% (11/67) 4.18 0.0 0.0
GO:0006412 translation 16.42% (11/67) 4.22 0.0 0.0
GO:0044237 cellular metabolic process 43.28% (29/67) 1.97 0.0 0.0
GO:0003735 structural constituent of ribosome 16.42% (11/67) 4.18 0.0 0.0
GO:0006518 peptide metabolic process 16.42% (11/67) 4.12 0.0 0.0
GO:0043604 amide biosynthetic process 16.42% (11/67) 4.09 0.0 0.0
GO:0005198 structural molecule activity 16.42% (11/67) 4.01 0.0 0.0
GO:0015986 proton motive force-driven ATP synthesis 8.96% (6/67) 6.36 0.0 0.0
GO:0006754 ATP biosynthetic process 8.96% (6/67) 6.36 0.0 0.0
GO:0043603 amide metabolic process 16.42% (11/67) 3.97 0.0 0.0
GO:0009145 purine nucleoside triphosphate biosynthetic process 8.96% (6/67) 6.21 0.0 0.0
GO:0009206 purine ribonucleoside triphosphate biosynthetic process 8.96% (6/67) 6.21 0.0 0.0
GO:0009201 ribonucleoside triphosphate biosynthetic process 8.96% (6/67) 6.05 0.0 0.0
GO:0009142 nucleoside triphosphate biosynthetic process 8.96% (6/67) 6.05 0.0 0.0
GO:0050136 NADH dehydrogenase (quinone) activity 7.46% (5/67) 6.92 0.0 0.0
GO:0008137 NADH dehydrogenase (ubiquinone) activity 7.46% (5/67) 6.92 0.0 0.0
GO:0016651 oxidoreductase activity, acting on NAD(P)H 8.96% (6/67) 5.95 0.0 0.0
GO:0098796 membrane protein complex 13.43% (9/67) 4.3 0.0 0.0
GO:0009987 cellular process 49.25% (33/67) 1.55 0.0 0.0
GO:0003955 NAD(P)H dehydrogenase (quinone) activity 7.46% (5/67) 6.71 0.0 0.0
GO:0003954 NADH dehydrogenase activity 7.46% (5/67) 6.67 0.0 0.0
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor 7.46% (5/67) 6.53 0.0 0.0
GO:0009055 electron transfer activity 10.45% (7/67) 4.95 0.0 0.0
GO:0009152 purine ribonucleotide biosynthetic process 8.96% (6/67) 5.58 0.0 0.0
GO:0034654 nucleobase-containing compound biosynthetic process 13.43% (9/67) 4.03 0.0 0.0
GO:0009260 ribonucleotide biosynthetic process 8.96% (6/67) 5.44 0.0 0.0
GO:0046390 ribose phosphate biosynthetic process 8.96% (6/67) 5.44 0.0 0.0
GO:0006164 purine nucleotide biosynthetic process 8.96% (6/67) 5.33 0.0 0.0
GO:0005575 cellular_component 32.84% (22/67) 1.98 0.0 0.0
GO:0015078 proton transmembrane transporter activity 8.96% (6/67) 5.23 0.0 0.0
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) 5.97% (4/67) 7.13 0.0 0.0
GO:0072522 purine-containing compound biosynthetic process 8.96% (6/67) 5.16 0.0 0.0
GO:0046034 ATP metabolic process 8.96% (6/67) 5.1 0.0 0.0
GO:0009144 purine nucleoside triphosphate metabolic process 8.96% (6/67) 5.04 0.0 0.0
GO:0009205 purine ribonucleoside triphosphate metabolic process 8.96% (6/67) 5.04 0.0 0.0
GO:0018130 heterocycle biosynthetic process 13.43% (9/67) 3.68 0.0 0.0
GO:0019438 aromatic compound biosynthetic process 13.43% (9/67) 3.68 0.0 0.0
GO:0032991 protein-containing complex 19.4% (13/67) 2.8 0.0 0.0
GO:0009199 ribonucleoside triphosphate metabolic process 8.96% (6/67) 4.96 0.0 0.0
GO:1901293 nucleoside phosphate biosynthetic process 8.96% (6/67) 4.95 0.0 0.0
GO:0009165 nucleotide biosynthetic process 8.96% (6/67) 4.95 0.0 0.0
GO:0009141 nucleoside triphosphate metabolic process 8.96% (6/67) 4.92 0.0 0.0
GO:1901362 organic cyclic compound biosynthetic process 13.43% (9/67) 3.54 0.0 0.0
GO:0022857 transmembrane transporter activity 17.91% (12/67) 2.86 0.0 0.0
GO:0005215 transporter activity 17.91% (12/67) 2.82 0.0 1e-06
GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain 5.97% (4/67) 6.49 0.0 1e-06
GO:1901137 carbohydrate derivative biosynthetic process 8.96% (6/67) 4.7 0.0 1e-06
GO:0009150 purine ribonucleotide metabolic process 8.96% (6/67) 4.56 0.0 1e-06
GO:0022900 electron transport chain 7.46% (5/67) 5.23 0.0 1e-06
GO:0009259 ribonucleotide metabolic process 8.96% (6/67) 4.49 0.0 1e-06
GO:0019693 ribose phosphate metabolic process 8.96% (6/67) 4.47 0.0 1e-06
GO:0008152 metabolic process 43.28% (29/67) 1.34 0.0 2e-06
GO:0043232 intracellular non-membrane-bounded organelle 11.94% (8/67) 3.52 0.0 2e-06
GO:0043228 non-membrane-bounded organelle 11.94% (8/67) 3.52 0.0 2e-06
GO:0006091 generation of precursor metabolites and energy 8.96% (6/67) 4.38 0.0 2e-06
GO:0015399 primary active transmembrane transporter activity 8.96% (6/67) 4.33 1e-06 2e-06
GO:0006163 purine nucleotide metabolic process 8.96% (6/67) 4.31 1e-06 2e-06
GO:0072521 purine-containing compound metabolic process 8.96% (6/67) 4.21 1e-06 4e-06
GO:0015935 small ribosomal subunit 5.97% (4/67) 5.74 1e-06 4e-06
GO:0042773 ATP synthesis coupled electron transport 4.48% (3/67) 7.18 1e-06 4e-06
GO:0005840 ribosome 10.45% (7/67) 3.71 1e-06 4e-06
GO:0090407 organophosphate biosynthetic process 8.96% (6/67) 4.12 1e-06 5e-06
GO:0009117 nucleotide metabolic process 8.96% (6/67) 4.1 1e-06 5e-06
GO:0006753 nucleoside phosphate metabolic process 8.96% (6/67) 4.08 2e-06 5e-06
GO:0022890 inorganic cation transmembrane transporter activity 8.96% (6/67) 3.95 3e-06 9e-06
GO:0055086 nucleobase-containing small molecule metabolic process 8.96% (6/67) 3.82 4e-06 1.5e-05
GO:0008324 monoatomic cation transmembrane transporter activity 8.96% (6/67) 3.79 5e-06 1.7e-05
GO:1901135 carbohydrate derivative metabolic process 8.96% (6/67) 3.72 6e-06 2.2e-05
GO:0015318 inorganic molecular entity transmembrane transporter activity 8.96% (6/67) 3.65 9e-06 2.8e-05
GO:0022804 active transmembrane transporter activity 8.96% (6/67) 3.65 9e-06 2.9e-05
GO:0006807 nitrogen compound metabolic process 32.84% (22/67) 1.38 1.4e-05 4.6e-05
GO:0015075 monoatomic ion transmembrane transporter activity 8.96% (6/67) 3.49 1.6e-05 5.2e-05
GO:0022904 respiratory electron transport chain 4.48% (3/67) 5.88 1.8e-05 5.7e-05
GO:0043229 intracellular organelle 13.43% (9/67) 2.58 1.9e-05 5.8e-05
GO:0043226 organelle 13.43% (9/67) 2.58 1.9e-05 5.8e-05
GO:0044391 ribosomal subunit 5.97% (4/67) 4.67 2e-05 5.9e-05
GO:0019843 rRNA binding 4.48% (3/67) 5.64 3.1e-05 9.2e-05
GO:0006812 monoatomic cation transport 7.46% (5/67) 3.69 4.5e-05 0.00013
GO:0019637 organophosphate metabolic process 8.96% (6/67) 3.23 4.5e-05 0.000131
GO:0006139 nucleobase-containing compound metabolic process 14.93% (10/67) 2.19 6.2e-05 0.000178
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 4.48% (3/67) 5.27 6.7e-05 0.00019
GO:1901564 organonitrogen compound metabolic process 26.87% (18/67) 1.41 8.5e-05 0.000238
GO:0034062 5'-3' RNA polymerase activity 4.48% (3/67) 5.13 9e-05 0.000245
GO:0097747 RNA polymerase activity 4.48% (3/67) 5.13 9e-05 0.000245
GO:0006811 monoatomic ion transport 7.46% (5/67) 3.47 9.3e-05 0.000252
GO:1902600 proton transmembrane transport 4.48% (3/67) 5.08 0.0001 0.000268
GO:0046483 heterocycle metabolic process 14.93% (10/67) 2.06 0.000128 0.000338
GO:0008150 biological_process 50.75% (34/67) 0.81 0.000133 0.00035
GO:0017004 cytochrome complex assembly 2.99% (2/67) 6.84 0.000135 0.000352
GO:0006725 cellular aromatic compound metabolic process 14.93% (10/67) 2.02 0.000159 0.000408
GO:0044238 primary metabolic process 32.84% (22/67) 1.14 0.000182 0.000464
GO:1901360 organic cyclic compound metabolic process 14.93% (10/67) 2.0 0.000185 0.000467
GO:0110165 cellular anatomical entity 19.4% (13/67) 1.66 0.000196 0.00049
GO:0009521 photosystem 4.48% (3/67) 4.64 0.000248 0.000612
GO:1990904 ribonucleoprotein complex 5.97% (4/67) 3.71 0.000255 0.000623
GO:0009522 photosystem I 2.99% (2/67) 6.21 0.000333 0.000806
GO:0015979 photosynthesis 4.48% (3/67) 4.44 0.000369 0.000885
GO:0071704 organic substance metabolic process 32.84% (22/67) 1.03 0.000525 0.001248
GO:0098655 monoatomic cation transmembrane transport 4.48% (3/67) 3.98 0.000941 0.002217
GO:0034220 monoatomic ion transmembrane transport 4.48% (3/67) 3.87 0.00116 0.002681
GO:0006351 DNA-templated transcription 4.48% (3/67) 3.87 0.00116 0.002681
GO:0051539 4 iron, 4 sulfur cluster binding 2.99% (2/67) 5.3 0.001195 0.002737
GO:0098662 inorganic cation transmembrane transport 4.48% (3/67) 3.83 0.001266 0.002874
GO:0016779 nucleotidyltransferase activity 4.48% (3/67) 3.81 0.001322 0.002974
GO:0098660 inorganic ion transmembrane transport 4.48% (3/67) 3.71 0.00159 0.003284
GO:0000314 organellar small ribosomal subunit 1.49% (1/67) 9.3 0.001588 0.003307
GO:1901678 iron coordination entity transport 1.49% (1/67) 9.3 0.001588 0.003307
GO:0015886 heme transport 1.49% (1/67) 9.3 0.001588 0.003307
GO:0005763 mitochondrial small ribosomal subunit 1.49% (1/67) 9.3 0.001588 0.003307
GO:0015232 heme transmembrane transporter activity 1.49% (1/67) 9.3 0.001588 0.003307
GO:0015990 electron transport coupled proton transport 1.49% (1/67) 9.3 0.001588 0.003307
GO:0015988 energy coupled proton transmembrane transport, against electrochemical gradient 1.49% (1/67) 9.3 0.001588 0.003307
GO:0009767 photosynthetic electron transport chain 2.99% (2/67) 5.13 0.001512 0.003371
GO:0065003 protein-containing complex assembly 4.48% (3/67) 3.72 0.001559 0.003445
GO:0044281 small molecule metabolic process 8.96% (6/67) 2.17 0.002153 0.00441
GO:0043170 macromolecule metabolic process 23.88% (16/67) 1.08 0.002784 0.005657
GO:0098798 mitochondrial protein-containing complex 2.99% (2/67) 4.63 0.003013 0.006073
GO:0004129 cytochrome-c oxidase activity 1.49% (1/67) 8.3 0.003174 0.006297
GO:0016675 oxidoreductase activity, acting on a heme group of donors 1.49% (1/67) 8.3 0.003174 0.006297
GO:0022607 cellular component assembly 4.48% (3/67) 3.29 0.003642 0.007169
GO:0032774 RNA biosynthetic process 4.48% (3/67) 3.28 0.003695 0.007217
GO:0016491 oxidoreductase activity 11.94% (8/67) 1.66 0.003725 0.00722
GO:0043933 protein-containing complex organization 4.48% (3/67) 3.09 0.005375 0.01034
GO:0019538 protein metabolic process 17.91% (12/67) 1.09 0.009535 0.018066
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) 1.49% (1/67) 6.71 0.009491 0.01812
GO:0051540 metal cluster binding 2.99% (2/67) 3.74 0.009885 0.018451
GO:0051536 iron-sulfur cluster binding 2.99% (2/67) 3.74 0.009885 0.018451
GO:0032549 ribonucleoside binding 1.49% (1/67) 6.3 0.012635 0.022907
GO:0045277 respiratory chain complex IV 1.49% (1/67) 6.3 0.012635 0.022907
GO:0001882 nucleoside binding 1.49% (1/67) 6.3 0.012635 0.022907
GO:0006826 iron ion transport 1.49% (1/67) 6.3 0.012635 0.022907
GO:0020037 heme binding 5.97% (4/67) 2.11 0.01394 0.025092
GO:0046906 tetrapyrrole binding 5.97% (4/67) 2.09 0.014668 0.026215
GO:0009539 photosystem II reaction center 1.49% (1/67) 5.84 0.017333 0.030545
GO:0009773 photosynthetic electron transport in photosystem I 1.49% (1/67) 5.84 0.017333 0.030545
GO:0009060 aerobic respiration 1.49% (1/67) 5.3 0.025114 0.043949
GO:0030100 regulation of endocytosis 1.49% (1/67) 5.21 0.026662 0.045093
GO:0045333 cellular respiration 1.49% (1/67) 5.21 0.026662 0.045093
GO:0048259 regulation of receptor-mediated endocytosis 1.49% (1/67) 5.21 0.026662 0.045093
GO:2000369 regulation of clathrin-dependent endocytosis 1.49% (1/67) 5.21 0.026662 0.045093
GO:0070069 cytochrome complex 1.49% (1/67) 5.21 0.026662 0.045093
GO:0140098 catalytic activity, acting on RNA 4.48% (3/67) 2.2 0.027792 0.046691
GO:0060627 regulation of vesicle-mediated transport 1.49% (1/67) 5.13 0.028209 0.046767
GO:0048268 clathrin coat assembly 1.49% (1/67) 5.13 0.028209 0.046767
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (67) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms