Coexpression cluster: Cluster_147 (Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0034641 cellular nitrogen compound metabolic process 32.66% (65/199) 2.88 0.0 0.0
GO:0044271 cellular nitrogen compound biosynthetic process 20.6% (41/199) 3.37 0.0 0.0
GO:1901566 organonitrogen compound biosynthetic process 19.6% (39/199) 3.41 0.0 0.0
GO:0006518 peptide metabolic process 15.08% (30/199) 3.99 0.0 0.0
GO:0005840 ribosome 14.07% (28/199) 4.14 0.0 0.0
GO:0043043 peptide biosynthetic process 14.57% (29/199) 4.01 0.0 0.0
GO:0043603 amide metabolic process 15.08% (30/199) 3.85 0.0 0.0
GO:0043604 amide biosynthetic process 14.57% (29/199) 3.92 0.0 0.0
GO:0006412 translation 14.07% (28/199) 4.0 0.0 0.0
GO:0044249 cellular biosynthetic process 22.11% (44/199) 2.81 0.0 0.0
GO:0043228 non-membrane-bounded organelle 14.57% (29/199) 3.81 0.0 0.0
GO:0043232 intracellular non-membrane-bounded organelle 14.57% (29/199) 3.81 0.0 0.0
GO:0044237 cellular metabolic process 38.19% (76/199) 1.79 0.0 0.0
GO:1901576 organic substance biosynthetic process 22.11% (44/199) 2.7 0.0 0.0
GO:0009059 macromolecule biosynthetic process 16.08% (32/199) 3.32 0.0 0.0
GO:0003735 structural constituent of ribosome 13.07% (26/199) 3.85 0.0 0.0
GO:0009987 cellular process 46.23% (92/199) 1.46 0.0 0.0
GO:0009058 biosynthetic process 22.11% (44/199) 2.58 0.0 0.0
GO:0005198 structural molecule activity 13.07% (26/199) 3.68 0.0 0.0
GO:0003674 molecular_function 74.87% (149/199) 0.81 0.0 0.0
GO:0006807 nitrogen compound metabolic process 38.19% (76/199) 1.6 0.0 0.0
GO:0110165 cellular anatomical entity 25.63% (51/199) 2.06 0.0 0.0
GO:0008152 metabolic process 43.72% (87/199) 1.36 0.0 0.0
GO:0043226 organelle 16.08% (32/199) 2.83 0.0 0.0
GO:0043229 intracellular organelle 16.08% (32/199) 2.83 0.0 0.0
GO:0005575 cellular_component 28.64% (57/199) 1.78 0.0 0.0
GO:0071704 organic substance metabolic process 40.7% (81/199) 1.34 0.0 0.0
GO:0003723 RNA binding 14.07% (28/199) 2.93 0.0 0.0
GO:0046483 heterocycle metabolic process 18.59% (37/199) 2.38 0.0 0.0
GO:0006725 cellular aromatic compound metabolic process 18.59% (37/199) 2.34 0.0 0.0
GO:1901360 organic cyclic compound metabolic process 18.59% (37/199) 2.31 0.0 0.0
GO:1901564 organonitrogen compound metabolic process 30.15% (60/199) 1.58 0.0 0.0
GO:0008150 biological_process 55.28% (110/199) 0.94 0.0 0.0
GO:0043038 amino acid activation 5.53% (11/199) 5.21 0.0 0.0
GO:0004812 aminoacyl-tRNA ligase activity 5.53% (11/199) 5.21 0.0 0.0
GO:0006418 tRNA aminoacylation for protein translation 5.53% (11/199) 5.21 0.0 0.0
GO:0016875 ligase activity, forming carbon-oxygen bonds 5.53% (11/199) 5.21 0.0 0.0
GO:0043039 tRNA aminoacylation 5.53% (11/199) 5.21 0.0 0.0
GO:0043170 macromolecule metabolic process 31.66% (63/199) 1.48 0.0 0.0
GO:0140101 catalytic activity, acting on a tRNA 6.03% (12/199) 4.7 0.0 0.0
GO:0016874 ligase activity 7.04% (14/199) 4.13 0.0 0.0
GO:0044238 primary metabolic process 35.68% (71/199) 1.26 0.0 0.0
GO:0005488 binding 51.26% (102/199) 0.91 0.0 0.0
GO:0016070 RNA metabolic process 11.56% (23/199) 2.71 0.0 0.0
GO:0006399 tRNA metabolic process 6.03% (12/199) 4.28 0.0 0.0
GO:0033013 tetrapyrrole metabolic process 4.02% (8/199) 5.64 0.0 0.0
GO:0003676 nucleic acid binding 21.11% (42/199) 1.7 0.0 0.0
GO:0097159 organic cyclic compound binding 35.18% (70/199) 1.16 0.0 0.0
GO:0090304 nucleic acid metabolic process 13.07% (26/199) 2.34 0.0 0.0
GO:0034660 ncRNA metabolic process 6.53% (13/199) 3.75 0.0 0.0
GO:0033014 tetrapyrrole biosynthetic process 3.52% (7/199) 5.63 0.0 0.0
GO:0006139 nucleobase-containing compound metabolic process 14.07% (28/199) 2.1 0.0 0.0
GO:0140098 catalytic activity, acting on RNA 8.04% (16/199) 3.04 0.0 0.0
GO:0006520 amino acid metabolic process 7.04% (14/199) 3.31 0.0 0.0
GO:0006778 porphyrin-containing compound metabolic process 3.02% (6/199) 5.51 0.0 0.0
GO:0140640 catalytic activity, acting on a nucleic acid 8.54% (17/199) 2.47 0.0 0.0
GO:0019752 carboxylic acid metabolic process 7.54% (15/199) 2.62 0.0 0.0
GO:0043436 oxoacid metabolic process 7.54% (15/199) 2.61 0.0 0.0
GO:0006082 organic acid metabolic process 7.54% (15/199) 2.61 0.0 0.0
GO:0006779 porphyrin-containing compound biosynthetic process 2.51% (5/199) 5.46 0.0 1e-06
GO:0044281 small molecule metabolic process 9.05% (18/199) 2.19 0.0 1e-06
GO:0005737 cytoplasm 4.52% (9/199) 3.28 0.0 4e-06
GO:0019438 aromatic compound biosynthetic process 6.03% (12/199) 2.53 1e-06 1.4e-05
GO:0018130 heterocycle biosynthetic process 6.03% (12/199) 2.52 2e-06 1.4e-05
GO:1901362 organic cyclic compound biosynthetic process 6.03% (12/199) 2.39 4e-06 3.6e-05
GO:0003824 catalytic activity 35.68% (71/199) 0.7 7e-06 6.2e-05
GO:0005525 GTP binding 4.02% (8/199) 3.03 7e-06 6.3e-05
GO:0032561 guanyl ribonucleotide binding 4.02% (8/199) 3.03 7e-06 6.3e-05
GO:0019001 guanyl nucleotide binding 4.02% (8/199) 2.99 9e-06 7.5e-05
GO:0019538 protein metabolic process 18.09% (36/199) 1.1 1e-05 8.4e-05
GO:0004176 ATP-dependent peptidase activity 2.01% (4/199) 4.77 1.4e-05 0.000112
GO:0004252 serine-type endopeptidase activity 3.02% (6/199) 3.37 2.7e-05 0.000222
GO:0019843 rRNA binding 2.01% (4/199) 4.48 3.1e-05 0.00025
GO:0035639 purine ribonucleoside triphosphate binding 13.57% (27/199) 1.13 0.000114 0.0009
GO:1901363 heterocyclic compound binding 16.58% (33/199) 0.99 0.000117 0.000906
GO:0036094 small molecule binding 16.58% (33/199) 0.98 0.000133 0.000982
GO:0000427 plastid-encoded plastid RNA polymerase complex 1.01% (2/199) 6.73 0.000132 0.000987
GO:0019898 extrinsic component of membrane 1.51% (3/199) 4.92 0.000129 0.000991
GO:0043167 ion binding 22.11% (44/199) 0.81 0.000132 0.000999
GO:1990204 oxidoreductase complex 2.01% (4/199) 3.75 0.00023 0.001677
GO:0009654 photosystem II oxygen evolving complex 1.51% (3/199) 4.61 0.000248 0.001786
GO:0006457 protein folding 2.51% (5/199) 3.12 0.000294 0.001973
GO:0042440 pigment metabolic process 1.51% (3/199) 4.56 0.000278 0.001977
GO:1901265 nucleoside phosphate binding 15.58% (31/199) 0.95 0.000292 0.001979
GO:0000166 nucleotide binding 15.58% (31/199) 0.95 0.000292 0.001979
GO:0017076 purine nucleotide binding 15.08% (30/199) 0.98 0.000288 0.001996
GO:0017111 ribonucleoside triphosphate phosphatase activity 4.52% (9/199) 2.1 0.000287 0.002019
GO:0017171 serine hydrolase activity 3.02% (6/199) 2.69 0.000364 0.002359
GO:0008236 serine-type peptidase activity 3.02% (6/199) 2.69 0.000364 0.002359
GO:0043168 anion binding 15.58% (31/199) 0.94 0.000361 0.002389
GO:0016462 pyrophosphatase activity 4.52% (9/199) 2.01 0.000461 0.00292
GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor 1.01% (2/199) 5.92 0.000458 0.002932
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 4.52% (9/199) 1.98 0.000527 0.003303
GO:0016817 hydrolase activity, acting on acid anhydrides 4.52% (9/199) 1.97 0.000543 0.003366
GO:0032555 purine ribonucleotide binding 14.07% (28/199) 0.94 0.000687 0.004215
GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides 1.51% (3/199) 4.1 0.000714 0.004334
GO:0032553 ribonucleotide binding 14.07% (28/199) 0.93 0.000801 0.004811
GO:0045184 establishment of protein localization 3.02% (6/199) 2.45 0.000877 0.00522
GO:1902494 catalytic complex 3.52% (7/199) 2.2 0.000911 0.005311
GO:0097367 carbohydrate derivative binding 14.07% (28/199) 0.91 0.000904 0.005323
GO:0009451 RNA modification 2.51% (5/199) 2.76 0.000927 0.005351
GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor 1.01% (2/199) 5.41 0.000972 0.0055
GO:0070727 cellular macromolecule localization 3.02% (6/199) 2.41 0.001 0.005501
GO:0008104 protein localization 3.02% (6/199) 2.41 0.001 0.005501
GO:0033036 macromolecule localization 3.02% (6/199) 2.41 0.001 0.005501
GO:0032259 methylation 2.01% (4/199) 3.2 0.000971 0.005547
GO:0072599 establishment of protein localization to endoplasmic reticulum 1.01% (2/199) 5.27 0.001184 0.00595
GO:0030983 mismatched DNA binding 1.01% (2/199) 5.27 0.001184 0.00595
GO:0042026 protein refolding 1.01% (2/199) 5.27 0.001184 0.00595
GO:0045047 protein targeting to ER 1.01% (2/199) 5.27 0.001184 0.00595
GO:0006612 protein targeting to membrane 1.01% (2/199) 5.27 0.001184 0.00595
GO:0070972 protein localization to endoplasmic reticulum 1.01% (2/199) 5.27 0.001184 0.00595
GO:0006613 cotranslational protein targeting to membrane 1.01% (2/199) 5.27 0.001184 0.00595
GO:0015995 chlorophyll biosynthetic process 1.01% (2/199) 5.27 0.001184 0.00595
GO:0006614 SRP-dependent cotranslational protein targeting to membrane 1.01% (2/199) 5.27 0.001184 0.00595
GO:0000428 DNA-directed RNA polymerase complex 1.01% (2/199) 5.27 0.001184 0.00595
GO:0006298 mismatch repair 1.01% (2/199) 5.14 0.001416 0.007057
GO:0016879 ligase activity, forming carbon-nitrogen bonds 1.51% (3/199) 3.76 0.001439 0.007108
GO:0015994 chlorophyll metabolic process 1.01% (2/199) 5.03 0.001669 0.008107
GO:0030880 RNA polymerase complex 1.01% (2/199) 5.03 0.001669 0.008107
GO:0016887 ATP hydrolysis activity 3.02% (6/199) 2.23 0.001928 0.00929
GO:0000049 tRNA binding 1.01% (2/199) 4.82 0.002232 0.010667
GO:0009523 photosystem II 1.51% (3/199) 3.51 0.002384 0.0113
GO:0016741 transferase activity, transferring one-carbon groups 3.02% (6/199) 2.14 0.002607 0.012256
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds 1.51% (3/199) 3.31 0.003486 0.016258
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors 1.51% (3/199) 3.29 0.003642 0.016851
GO:0042180 cellular ketone metabolic process 1.01% (2/199) 4.41 0.003977 0.018115
GO:0004659 prenyltransferase activity 1.01% (2/199) 4.41 0.003977 0.018115
GO:0004175 endopeptidase activity 3.02% (6/199) 2.01 0.004034 0.01823
GO:0018160 peptidyl-pyrromethane cofactor linkage 0.5% (1/199) 7.73 0.004717 0.018456
GO:0042597 periplasmic space 0.5% (1/199) 7.73 0.004717 0.018456
GO:0016869 intramolecular aminotransferase activity 0.5% (1/199) 7.73 0.004717 0.018456
GO:0008864 formyltetrahydrofolate deformylase activity 0.5% (1/199) 7.73 0.004717 0.018456
GO:0090228 positive regulation of red or far-red light signaling pathway 0.5% (1/199) 7.73 0.004717 0.018456
GO:0090227 regulation of red or far-red light signaling pathway 0.5% (1/199) 7.73 0.004717 0.018456
GO:0090391 granum assembly 0.5% (1/199) 7.73 0.004717 0.018456
GO:0004418 hydroxymethylbilane synthase activity 0.5% (1/199) 7.73 0.004717 0.018456
GO:0018198 peptidyl-cysteine modification 0.5% (1/199) 7.73 0.004717 0.018456
GO:0042286 glutamate-1-semialdehyde 2,1-aminomutase activity 0.5% (1/199) 7.73 0.004717 0.018456
GO:0010190 cytochrome b6f complex assembly 0.5% (1/199) 7.73 0.004717 0.018456
GO:0042793 plastid transcription 0.5% (1/199) 7.73 0.004717 0.018456
GO:0015846 polyamine transport 0.5% (1/199) 7.73 0.004717 0.018456
GO:0045910 negative regulation of DNA recombination 0.5% (1/199) 7.73 0.004717 0.018456
GO:0051053 negative regulation of DNA metabolic process 0.5% (1/199) 7.73 0.004717 0.018456
GO:0019808 polyamine binding 0.5% (1/199) 7.73 0.004717 0.018456
GO:0030956 glutamyl-tRNA(Gln) amidotransferase complex 0.5% (1/199) 7.73 0.004717 0.018456
GO:0050567 glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity 0.5% (1/199) 7.73 0.004717 0.018456
GO:0046408 chlorophyll synthetase activity 0.5% (1/199) 7.73 0.004717 0.018456
GO:0000018 regulation of DNA recombination 0.5% (1/199) 7.73 0.004717 0.018456
GO:0051641 cellular localization 3.02% (6/199) 1.96 0.004756 0.018484
GO:0043414 macromolecule methylation 1.51% (3/199) 3.14 0.004854 0.018742
GO:0046148 pigment biosynthetic process 1.01% (2/199) 4.2 0.005247 0.019994
GO:0006605 protein targeting 1.01% (2/199) 4.2 0.005247 0.019994
GO:0072657 protein localization to membrane 1.01% (2/199) 4.14 0.005706 0.02119
GO:0090150 establishment of protein localization to membrane 1.01% (2/199) 4.14 0.005706 0.02119
GO:0009507 chloroplast 1.01% (2/199) 4.14 0.005706 0.02119
GO:0009521 photosystem 1.51% (3/199) 3.06 0.005644 0.021366
GO:0009536 plastid 1.01% (2/199) 4.08 0.006184 0.022816
GO:0051668 localization within membrane 1.01% (2/199) 4.03 0.006678 0.024487
GO:0035596 methylthiotransferase activity 0.5% (1/199) 6.73 0.009412 0.0295
GO:0050497 alkylthioltransferase activity 0.5% (1/199) 6.73 0.009412 0.0295
GO:0043953 protein transport by the Tat complex 0.5% (1/199) 6.73 0.009412 0.0295
GO:0004729 oxygen-dependent protoporphyrinogen oxidase activity 0.5% (1/199) 6.73 0.009412 0.0295
GO:0070818 protoporphyrinogen oxidase activity 0.5% (1/199) 6.73 0.009412 0.0295
GO:0004829 threonine-tRNA ligase activity 0.5% (1/199) 6.73 0.009412 0.0295
GO:0030785 [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity 0.5% (1/199) 6.73 0.009412 0.0295
GO:0004827 proline-tRNA ligase activity 0.5% (1/199) 6.73 0.009412 0.0295
GO:0042374 phylloquinone metabolic process 0.5% (1/199) 6.73 0.009412 0.0295
GO:0004392 heme oxygenase (decyclizing) activity 0.5% (1/199) 6.73 0.009412 0.0295
GO:0006788 heme oxidation 0.5% (1/199) 6.73 0.009412 0.0295
GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen 0.5% (1/199) 6.73 0.009412 0.0295
GO:0006435 threonyl-tRNA aminoacylation 0.5% (1/199) 6.73 0.009412 0.0295
GO:0004019 adenylosuccinate synthase activity 0.5% (1/199) 6.73 0.009412 0.0295
GO:0004109 coproporphyrinogen oxidase activity 0.5% (1/199) 6.73 0.009412 0.0295
GO:0004654 polyribonucleotide nucleotidyltransferase activity 0.5% (1/199) 6.73 0.009412 0.0295
GO:0006433 prolyl-tRNA aminoacylation 0.5% (1/199) 6.73 0.009412 0.0295
GO:0042373 vitamin K metabolic process 0.5% (1/199) 6.73 0.009412 0.0295
GO:0042362 fat-soluble vitamin biosynthetic process 0.5% (1/199) 6.73 0.009412 0.0295
GO:0042371 vitamin K biosynthetic process 0.5% (1/199) 6.73 0.009412 0.0295
GO:0006430 lysyl-tRNA aminoacylation 0.5% (1/199) 6.73 0.009412 0.0295
GO:0042372 phylloquinone biosynthetic process 0.5% (1/199) 6.73 0.009412 0.0295
GO:0004824 lysine-tRNA ligase activity 0.5% (1/199) 6.73 0.009412 0.0295
GO:0006427 histidyl-tRNA aminoacylation 0.5% (1/199) 6.73 0.009412 0.0295
GO:0004821 histidine-tRNA ligase activity 0.5% (1/199) 6.73 0.009412 0.0295
GO:0006775 fat-soluble vitamin metabolic process 0.5% (1/199) 6.73 0.009412 0.0295
GO:0015979 photosynthesis 1.51% (3/199) 2.87 0.008195 0.029859
GO:0008168 methyltransferase activity 2.51% (5/199) 1.96 0.009795 0.030536
GO:0001510 RNA methylation 1.01% (2/199) 3.73 0.010005 0.031026
GO:0005524 ATP binding 10.05% (20/199) 0.81 0.010564 0.032586
GO:0061695 transferase complex, transferring phosphorus-containing groups 1.01% (2/199) 3.6 0.011891 0.036297
GO:0009416 response to light stimulus 1.01% (2/199) 3.6 0.011891 0.036297
GO:0004820 glycine-tRNA ligase activity 0.5% (1/199) 6.14 0.014084 0.038015
GO:0004826 phenylalanine-tRNA ligase activity 0.5% (1/199) 6.14 0.014084 0.038015
GO:0006426 glycyl-tRNA aminoacylation 0.5% (1/199) 6.14 0.014084 0.038015
GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor 0.5% (1/199) 6.14 0.014084 0.038015
GO:1901891 regulation of cell septum assembly 0.5% (1/199) 6.14 0.014084 0.038015
GO:0006421 asparaginyl-tRNA aminoacylation 0.5% (1/199) 6.14 0.014084 0.038015
GO:0004825 methionine-tRNA ligase activity 0.5% (1/199) 6.14 0.014084 0.038015
GO:0006431 methionyl-tRNA aminoacylation 0.5% (1/199) 6.14 0.014084 0.038015
GO:0009570 chloroplast stroma 0.5% (1/199) 6.14 0.014084 0.038015
GO:0009532 plastid stroma 0.5% (1/199) 6.14 0.014084 0.038015
GO:0006424 glutamyl-tRNA aminoacylation 0.5% (1/199) 6.14 0.014084 0.038015
GO:0006432 phenylalanyl-tRNA aminoacylation 0.5% (1/199) 6.14 0.014084 0.038015
GO:0004817 cysteine-tRNA ligase activity 0.5% (1/199) 6.14 0.014084 0.038015
GO:0004818 glutamate-tRNA ligase activity 0.5% (1/199) 6.14 0.014084 0.038015
GO:0032954 regulation of cytokinetic process 0.5% (1/199) 6.14 0.014084 0.038015
GO:0032955 regulation of division septum assembly 0.5% (1/199) 6.14 0.014084 0.038015
GO:0006423 cysteinyl-tRNA aminoacylation 0.5% (1/199) 6.14 0.014084 0.038015
GO:0004816 asparagine-tRNA ligase activity 0.5% (1/199) 6.14 0.014084 0.038015
GO:0004784 superoxide dismutase activity 0.5% (1/199) 6.14 0.014084 0.038015
GO:0009967 positive regulation of signal transduction 0.5% (1/199) 6.14 0.014084 0.038015
GO:0010647 positive regulation of cell communication 0.5% (1/199) 6.14 0.014084 0.038015
GO:0023056 positive regulation of signaling 0.5% (1/199) 6.14 0.014084 0.038015
GO:0004853 uroporphyrinogen decarboxylase activity 0.5% (1/199) 6.14 0.014084 0.038015
GO:0042586 peptide deformylase activity 0.5% (1/199) 6.14 0.014084 0.038015
GO:0009314 response to radiation 1.01% (2/199) 3.56 0.012552 0.038114
GO:0016853 isomerase activity 2.01% (4/199) 2.08 0.015437 0.041473
GO:0030554 adenyl nucleotide binding 11.56% (23/199) 0.69 0.015946 0.042646
GO:0004061 arylformamidase activity 0.5% (1/199) 5.73 0.018735 0.048545
GO:0080183 response to photooxidative stress 0.5% (1/199) 5.73 0.018735 0.048545
GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase 0.5% (1/199) 5.73 0.018735 0.048545
GO:0034755 iron ion transmembrane transport 0.5% (1/199) 5.73 0.018735 0.048545
GO:2000030 regulation of response to red or far red light 0.5% (1/199) 5.73 0.018735 0.048545
GO:0005381 iron ion transmembrane transporter activity 0.5% (1/199) 5.73 0.018735 0.048545
GO:0071705 nitrogen compound transport 2.51% (5/199) 1.73 0.018294 0.048699
GO:0015031 protein transport 2.01% (4/199) 1.98 0.019255 0.04967
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (199) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms