Coexpression cluster: Cluster_167 (Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0034641 cellular nitrogen compound metabolic process 38.75% (31/80) 3.12 0.0 0.0
GO:0003723 RNA binding 26.25% (21/80) 3.83 0.0 0.0
GO:0016070 RNA metabolic process 25.0% (20/80) 3.82 0.0 0.0
GO:0003676 nucleic acid binding 37.5% (30/80) 2.53 0.0 0.0
GO:0034660 ncRNA metabolic process 15.0% (12/80) 4.95 0.0 0.0
GO:0090304 nucleic acid metabolic process 25.0% (20/80) 3.27 0.0 0.0
GO:0006139 nucleobase-containing compound metabolic process 26.25% (21/80) 3.0 0.0 0.0
GO:0006396 RNA processing 16.25% (13/80) 4.27 0.0 0.0
GO:0009987 cellular process 52.5% (42/80) 1.64 0.0 0.0
GO:0046483 heterocycle metabolic process 26.25% (21/80) 2.88 0.0 0.0
GO:0006725 cellular aromatic compound metabolic process 26.25% (21/80) 2.84 0.0 0.0
GO:1901360 organic cyclic compound metabolic process 26.25% (21/80) 2.81 0.0 0.0
GO:0044237 cellular metabolic process 41.25% (33/80) 1.9 0.0 0.0
GO:0005575 cellular_component 35.0% (28/80) 2.07 0.0 0.0
GO:0097159 organic cyclic compound binding 47.5% (38/80) 1.59 0.0 0.0
GO:0005488 binding 62.5% (50/80) 1.2 0.0 0.0
GO:0034470 ncRNA processing 10.0% (8/80) 4.96 0.0 0.0
GO:0043170 macromolecule metabolic process 38.75% (31/80) 1.78 0.0 0.0
GO:0003674 molecular_function 77.5% (62/80) 0.86 0.0 0.0
GO:0140098 catalytic activity, acting on RNA 13.75% (11/80) 3.82 0.0 0.0
GO:0009451 RNA modification 10.0% (8/80) 4.75 0.0 0.0
GO:0006807 nitrogen compound metabolic process 40.0% (32/80) 1.66 0.0 0.0
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity 7.5% (6/80) 5.9 0.0 0.0
GO:0140101 catalytic activity, acting on a tRNA 8.75% (7/80) 5.24 0.0 0.0
GO:0110165 cellular anatomical entity 27.5% (22/80) 2.16 0.0 0.0
GO:0008173 RNA methyltransferase activity 6.25% (5/80) 6.51 0.0 0.0
GO:0006412 translation 12.5% (10/80) 3.83 0.0 0.0
GO:0043043 peptide biosynthetic process 12.5% (10/80) 3.79 0.0 0.0
GO:0043226 organelle 17.5% (14/80) 2.96 0.0 0.0
GO:0043229 intracellular organelle 17.5% (14/80) 2.96 0.0 0.0
GO:0006364 rRNA processing 7.5% (6/80) 5.61 0.0 0.0
GO:0003735 structural constituent of ribosome 12.5% (10/80) 3.79 0.0 0.0
GO:0006518 peptide metabolic process 12.5% (10/80) 3.72 0.0 0.0
GO:0016072 rRNA metabolic process 7.5% (6/80) 5.48 0.0 0.0
GO:0043604 amide biosynthetic process 12.5% (10/80) 3.7 0.0 0.0
GO:0005198 structural molecule activity 12.5% (10/80) 3.61 0.0 0.0
GO:0043603 amide metabolic process 12.5% (10/80) 3.58 0.0 0.0
GO:0140640 catalytic activity, acting on a nucleic acid 13.75% (11/80) 3.16 0.0 0.0
GO:0044238 primary metabolic process 40.0% (32/80) 1.42 0.0 0.0
GO:0009059 macromolecule biosynthetic process 13.75% (11/80) 3.1 0.0 0.0
GO:0044271 cellular nitrogen compound biosynthetic process 15.0% (12/80) 2.91 0.0 0.0
GO:0008152 metabolic process 42.5% (34/80) 1.32 0.0 1e-06
GO:0006399 tRNA metabolic process 7.5% (6/80) 4.59 0.0 1e-06
GO:0071704 organic substance metabolic process 40.0% (32/80) 1.32 0.0 1e-06
GO:1901566 organonitrogen compound biosynthetic process 13.75% (11/80) 2.9 0.0 1e-06
GO:0008175 tRNA methyltransferase activity 3.75% (3/80) 7.63 0.0 2e-06
GO:0008168 methyltransferase activity 8.75% (7/80) 3.76 1e-06 5e-06
GO:0016741 transferase activity, transferring one-carbon groups 8.75% (7/80) 3.68 1e-06 8e-06
GO:0043228 non-membrane-bounded organelle 10.0% (8/80) 3.27 2e-06 1e-05
GO:0043232 intracellular non-membrane-bounded organelle 10.0% (8/80) 3.27 2e-06 1e-05
GO:1990904 ribonucleoprotein complex 7.5% (6/80) 4.04 2e-06 1e-05
GO:0008150 biological_process 53.75% (43/80) 0.9 3e-06 1.4e-05
GO:0005840 ribosome 8.75% (7/80) 3.45 4e-06 1.9e-05
GO:0043039 tRNA aminoacylation 5.0% (4/80) 5.07 7e-06 3e-05
GO:0043038 amino acid activation 5.0% (4/80) 5.07 7e-06 3e-05
GO:0004812 aminoacyl-tRNA ligase activity 5.0% (4/80) 5.07 7e-06 3e-05
GO:0006418 tRNA aminoacylation for protein translation 5.0% (4/80) 5.07 7e-06 3e-05
GO:0016875 ligase activity, forming carbon-oxygen bonds 5.0% (4/80) 5.07 7e-06 3e-05
GO:0051082 unfolded protein binding 5.0% (4/80) 5.04 7e-06 3.1e-05
GO:0044249 cellular biosynthetic process 15.0% (12/80) 2.25 7e-06 3.2e-05
GO:0042254 ribosome biogenesis 3.75% (3/80) 6.31 7e-06 3.2e-05
GO:0043414 macromolecule methylation 5.0% (4/80) 4.87 1.1e-05 4.8e-05
GO:0016887 ATP hydrolysis activity 7.5% (6/80) 3.54 1.4e-05 5.7e-05
GO:0001522 pseudouridine synthesis 3.75% (3/80) 5.98 1.5e-05 6e-05
GO:0022613 ribonucleoprotein complex biogenesis 3.75% (3/80) 5.93 1.7e-05 6.6e-05
GO:1901576 organic substance biosynthetic process 15.0% (12/80) 2.14 1.6e-05 6.6e-05
GO:0016423 tRNA (guanine) methyltransferase activity 2.5% (2/80) 8.04 2.1e-05 8.4e-05
GO:0032259 methylation 5.0% (4/80) 4.52 2.9e-05 0.000115
GO:0001510 RNA methylation 3.75% (3/80) 5.63 3.1e-05 0.00012
GO:0009058 biosynthetic process 15.0% (12/80) 2.02 3.7e-05 0.000138
GO:0006457 protein folding 5.0% (4/80) 4.11 8.9e-05 0.00033
GO:0005515 protein binding 25.0% (20/80) 1.32 9.5e-05 0.000348
GO:0015934 large ribosomal subunit 3.75% (3/80) 4.93 0.000136 0.000491
GO:0005759 mitochondrial matrix 2.5% (2/80) 6.58 0.000193 0.000689
GO:0017111 ribonucleoside triphosphate phosphatase activity 7.5% (6/80) 2.83 0.000207 0.000729
GO:0016462 pyrophosphatase activity 7.5% (6/80) 2.74 0.000293 0.001019
GO:0016874 ligase activity 5.0% (4/80) 3.64 0.00031 0.001063
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 7.5% (6/80) 2.71 0.000324 0.001098
GO:0016817 hydrolase activity, acting on acid anhydrides 7.5% (6/80) 2.7 0.000331 0.001108
GO:0032991 protein-containing complex 11.25% (9/80) 2.02 0.000379 0.001249
GO:0044085 cellular component biogenesis 3.75% (3/80) 4.38 0.000418 0.001361
GO:0043231 intracellular membrane-bounded organelle 7.5% (6/80) 2.62 0.000446 0.001417
GO:0043227 membrane-bounded organelle 7.5% (6/80) 2.62 0.000446 0.001417
GO:0030515 snoRNA binding 2.5% (2/80) 5.96 0.000474 0.00149
GO:0005737 cytoplasm 5.0% (4/80) 3.42 0.000553 0.001717
GO:0009982 pseudouridine synthase activity 2.5% (2/80) 5.58 0.0008 0.002457
GO:0005634 nucleus 6.25% (5/80) 2.77 0.000856 0.002598
GO:0044391 ribosomal subunit 3.75% (3/80) 4.0 0.000903 0.00271
GO:0031974 membrane-enclosed lumen 2.5% (2/80) 5.4 0.001035 0.003004
GO:0070013 intracellular organelle lumen 2.5% (2/80) 5.4 0.001035 0.003004
GO:0043233 organelle lumen 2.5% (2/80) 5.4 0.001035 0.003004
GO:0006413 translational initiation 2.5% (2/80) 5.24 0.0013 0.00369
GO:0008170 N-methyltransferase activity 2.5% (2/80) 5.24 0.0013 0.00369
GO:0004152 dihydroorotate dehydrogenase activity 1.25% (1/80) 9.04 0.001896 0.00527
GO:0000493 box H/ACA snoRNP assembly 1.25% (1/80) 9.04 0.001896 0.00527
GO:0019843 rRNA binding 2.5% (2/80) 4.79 0.002388 0.006567
GO:0006520 amino acid metabolic process 5.0% (4/80) 2.82 0.002563 0.006974
GO:0006400 tRNA modification 2.5% (2/80) 4.65 0.00291 0.00784
GO:0016428 tRNA (cytidine-5-)-methyltransferase activity 1.25% (1/80) 8.04 0.003789 0.009011
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 1.25% (1/80) 8.04 0.003789 0.009011
GO:0000491 small nucleolar ribonucleoprotein complex assembly 1.25% (1/80) 8.04 0.003789 0.009011
GO:0006427 histidyl-tRNA aminoacylation 1.25% (1/80) 8.04 0.003789 0.009011
GO:0101031 protein folding chaperone complex 1.25% (1/80) 8.04 0.003789 0.009011
GO:0004821 histidine-tRNA ligase activity 1.25% (1/80) 8.04 0.003789 0.009011
GO:0006422 aspartyl-tRNA aminoacylation 1.25% (1/80) 8.04 0.003789 0.009011
GO:0016427 tRNA (cytidine) methyltransferase activity 1.25% (1/80) 8.04 0.003789 0.009011
GO:0004824 lysine-tRNA ligase activity 1.25% (1/80) 8.04 0.003789 0.009011
GO:0005832 chaperonin-containing T-complex 1.25% (1/80) 8.04 0.003789 0.009011
GO:0006430 lysyl-tRNA aminoacylation 1.25% (1/80) 8.04 0.003789 0.009011
GO:0004815 aspartate-tRNA ligase activity 1.25% (1/80) 8.04 0.003789 0.009011
GO:0035639 purine ribonucleoside triphosphate binding 15.0% (12/80) 1.27 0.003775 0.010068
GO:0003743 translation initiation factor activity 2.5% (2/80) 4.26 0.00494 0.011645
GO:0016866 intramolecular transferase activity 2.5% (2/80) 4.24 0.005117 0.011955
GO:0006432 phenylalanyl-tRNA aminoacylation 1.25% (1/80) 7.46 0.005678 0.012389
GO:0034511 U3 snoRNA binding 1.25% (1/80) 7.46 0.005678 0.012389
GO:0030490 maturation of SSU-rRNA 1.25% (1/80) 7.46 0.005678 0.012389
GO:0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity 1.25% (1/80) 7.46 0.005678 0.012389
GO:0008176 tRNA (guanine(46)-N7)-methyltransferase activity 1.25% (1/80) 7.46 0.005678 0.012389
GO:0016433 rRNA (adenine) methyltransferase activity 1.25% (1/80) 7.46 0.005678 0.012389
GO:0032543 mitochondrial translation 1.25% (1/80) 7.46 0.005678 0.012389
GO:0004826 phenylalanine-tRNA ligase activity 1.25% (1/80) 7.46 0.005678 0.012389
GO:0005524 ATP binding 13.75% (11/80) 1.26 0.005785 0.012518
GO:1901564 organonitrogen compound metabolic process 20.0% (16/80) 0.98 0.005865 0.012588
GO:0097367 carbohydrate derivative binding 16.25% (13/80) 1.12 0.006124 0.013037
GO:0016853 isomerase activity 3.75% (3/80) 2.98 0.006687 0.014123
GO:0031369 translation initiation factor binding 1.25% (1/80) 7.04 0.007564 0.0156
GO:0008097 5S rRNA binding 1.25% (1/80) 7.04 0.007564 0.0156
GO:0008033 tRNA processing 2.5% (2/80) 3.96 0.007459 0.015629
GO:0030150 protein import into mitochondrial matrix 1.25% (1/80) 6.72 0.009446 0.018472
GO:0140318 protein transporter activity 1.25% (1/80) 6.72 0.009446 0.018472
GO:0022884 macromolecule transmembrane transporter activity 1.25% (1/80) 6.72 0.009446 0.018472
GO:0008320 protein transmembrane transporter activity 1.25% (1/80) 6.72 0.009446 0.018472
GO:0140597 protein carrier chaperone 1.25% (1/80) 6.72 0.009446 0.018472
GO:0005854 nascent polypeptide-associated complex 1.25% (1/80) 6.72 0.009446 0.018472
GO:0032977 membrane insertase activity 1.25% (1/80) 6.72 0.009446 0.018472
GO:0008135 translation factor activity, RNA binding 2.5% (2/80) 3.57 0.012498 0.024084
GO:0090079 translation regulator activity, nucleic acid binding 2.5% (2/80) 3.57 0.012498 0.024084
GO:1990542 mitochondrial transmembrane transport 1.25% (1/80) 6.24 0.013199 0.025251
GO:0071840 cellular component organization or biogenesis 6.25% (5/80) 1.83 0.013456 0.025374
GO:0032555 purine ribonucleotide binding 15.0% (12/80) 1.03 0.013437 0.02552
GO:0045182 translation regulator activity 2.5% (2/80) 3.49 0.013866 0.025961
GO:0018216 peptidyl-arginine methylation 1.25% (1/80) 6.04 0.015071 0.026703
GO:0018195 peptidyl-arginine modification 1.25% (1/80) 6.04 0.015071 0.026703
GO:0032549 ribonucleoside binding 1.25% (1/80) 6.04 0.015071 0.026703
GO:0001882 nucleoside binding 1.25% (1/80) 6.04 0.015071 0.026703
GO:0044743 protein transmembrane import into intracellular organelle 1.25% (1/80) 6.04 0.015071 0.026703
GO:0008649 rRNA methyltransferase activity 1.25% (1/80) 6.04 0.015071 0.026703
GO:0032553 ribonucleotide binding 15.0% (12/80) 1.02 0.014447 0.026859
GO:1901363 heterocyclic compound binding 16.25% (13/80) 0.96 0.014971 0.027638
GO:0036094 small molecule binding 16.25% (13/80) 0.95 0.015797 0.027804
GO:0016273 arginine N-methyltransferase activity 1.25% (1/80) 5.87 0.016939 0.02942
GO:0016274 protein-arginine N-methyltransferase activity 1.25% (1/80) 5.87 0.016939 0.02942
GO:0019752 carboxylic acid metabolic process 5.0% (4/80) 2.03 0.017075 0.029463
GO:0006082 organic acid metabolic process 5.0% (4/80) 2.01 0.017511 0.029826
GO:0043436 oxoacid metabolic process 5.0% (4/80) 2.02 0.017401 0.029831
GO:0017076 purine nucleotide binding 15.0% (12/80) 0.97 0.018468 0.031253
GO:0071806 protein transmembrane transport 1.25% (1/80) 5.72 0.018803 0.031418
GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process 1.25% (1/80) 5.72 0.018803 0.031418
GO:0032559 adenyl ribonucleotide binding 13.75% (11/80) 1.01 0.020123 0.033411
GO:0000154 rRNA modification 1.25% (1/80) 5.58 0.020664 0.033884
GO:0005829 cytosol 1.25% (1/80) 5.58 0.020664 0.033884
GO:0044281 small molecule metabolic process 6.25% (5/80) 1.65 0.021662 0.0353
GO:0019856 pyrimidine nucleobase biosynthetic process 1.25% (1/80) 5.46 0.022522 0.036255
GO:0030488 tRNA methylation 1.25% (1/80) 5.46 0.022522 0.036255
GO:0006206 pyrimidine nucleobase metabolic process 1.25% (1/80) 5.34 0.024376 0.038534
GO:0005730 nucleolus 1.25% (1/80) 5.34 0.024376 0.038534
GO:0005741 mitochondrial outer membrane 1.25% (1/80) 5.34 0.024376 0.038534
GO:0000166 nucleotide binding 15.0% (12/80) 0.9 0.025734 0.0402
GO:1901265 nucleoside phosphate binding 15.0% (12/80) 0.9 0.025734 0.0402
GO:0030554 adenyl nucleotide binding 13.75% (11/80) 0.94 0.027036 0.041986
GO:0022625 cytosolic large ribosomal subunit 1.25% (1/80) 5.14 0.028074 0.042841
GO:0000049 tRNA binding 1.25% (1/80) 5.14 0.028074 0.042841
GO:0043168 anion binding 15.0% (12/80) 0.88 0.027981 0.043199
GO:0070585 protein localization to mitochondrion 1.25% (1/80) 5.04 0.029917 0.044876
GO:0072655 establishment of protein localization to mitochondrion 1.25% (1/80) 5.04 0.029917 0.044876
GO:0005739 mitochondrion 1.25% (1/80) 5.04 0.029917 0.044876
GO:0065003 protein-containing complex assembly 2.5% (2/80) 2.88 0.030348 0.045265
GO:0034728 nucleosome organization 1.25% (1/80) 4.96 0.031757 0.046578
GO:0005732 sno(s)RNA-containing ribonucleoprotein complex 1.25% (1/80) 4.96 0.031757 0.046578
GO:0006334 nucleosome assembly 1.25% (1/80) 4.96 0.031757 0.046578
GO:0043412 macromolecule modification 11.25% (9/80) 1.02 0.032651 0.047623
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (80) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms