Coexpression cluster: Cluster_350 (Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0006139 nucleobase-containing compound metabolic process 27.94% (19/68) 3.09 0.0 0.0
GO:0046483 heterocycle metabolic process 27.94% (19/68) 2.97 0.0 0.0
GO:0006725 cellular aromatic compound metabolic process 27.94% (19/68) 2.93 0.0 0.0
GO:1901360 organic cyclic compound metabolic process 27.94% (19/68) 2.9 0.0 0.0
GO:0090304 nucleic acid metabolic process 23.53% (16/68) 3.19 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 27.94% (19/68) 2.65 0.0 0.0
GO:0016070 RNA metabolic process 19.12% (13/68) 3.43 0.0 0.0
GO:0006396 RNA processing 13.24% (9/68) 3.97 0.0 0.0
GO:0008152 metabolic process 47.06% (32/68) 1.46 0.0 0.0
GO:0003723 RNA binding 16.18% (11/68) 3.13 0.0 2e-06
GO:0006807 nitrogen compound metabolic process 38.24% (26/68) 1.6 0.0 3e-06
GO:0009451 RNA modification 8.82% (6/68) 4.57 0.0 7e-06
GO:0005488 binding 55.88% (38/68) 1.04 1e-06 1.5e-05
GO:0044238 primary metabolic process 39.71% (27/68) 1.41 1e-06 1.5e-05
GO:0044237 cellular metabolic process 33.82% (23/68) 1.61 1e-06 1.6e-05
GO:0003676 nucleic acid binding 25.0% (17/68) 1.94 1e-06 2.8e-05
GO:0009987 cellular process 41.18% (28/68) 1.29 2e-06 4e-05
GO:0071704 organic substance metabolic process 39.71% (27/68) 1.31 2e-06 5.1e-05
GO:0003674 molecular_function 70.59% (48/68) 0.72 3e-06 6.2e-05
GO:0097159 organic cyclic compound binding 38.24% (26/68) 1.28 6e-06 0.000112
GO:0008150 biological_process 54.41% (37/68) 0.91 9e-06 0.000161
GO:0043170 macromolecule metabolic process 30.88% (21/68) 1.45 1.2e-05 0.000202
GO:0006397 mRNA processing 5.88% (4/68) 4.29 5.5e-05 0.000896
GO:0016879 ligase activity, forming carbon-nitrogen bonds 4.41% (3/68) 5.31 6.2e-05 0.000964
GO:0034470 ncRNA processing 5.88% (4/68) 4.19 7.2e-05 0.001075
GO:0016071 mRNA metabolic process 5.88% (4/68) 4.01 0.000116 0.001553
GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor 2.94% (2/68) 6.96 0.000114 0.001587
GO:0003824 catalytic activity 42.65% (29/68) 0.95 0.000112 0.001616
GO:0016874 ligase activity 5.88% (4/68) 3.88 0.000166 0.002143
GO:0008033 tRNA processing 4.41% (3/68) 4.77 0.000186 0.002327
GO:0140097 catalytic activity, acting on DNA 5.88% (4/68) 3.63 0.000321 0.003881
GO:0034660 ncRNA metabolic process 5.88% (4/68) 3.6 0.000346 0.004051
GO:0009982 pseudouridine synthase activity 2.94% (2/68) 5.82 0.000579 0.006581
GO:0140640 catalytic activity, acting on a nucleic acid 8.82% (6/68) 2.52 0.000637 0.006821
GO:0006974 DNA damage response 5.88% (4/68) 3.37 0.000625 0.006896
GO:0001522 pseudouridine synthesis 2.94% (2/68) 5.63 0.00075 0.00781
GO:0033554 cellular response to stress 5.88% (4/68) 3.19 0.000982 0.009952
GO:0051716 cellular response to stimulus 5.88% (4/68) 3.14 0.001122 0.011077
GO:0035600 tRNA methylthiolation 1.47% (1/68) 9.28 0.001612 0.012089
GO:0004638 phosphoribosylaminoimidazole carboxylase activity 1.47% (1/68) 9.28 0.001612 0.012089
GO:0106388 18S rRNA aminocarboxypropyltransferase activity 1.47% (1/68) 9.28 0.001612 0.012089
GO:0032963 collagen metabolic process 1.47% (1/68) 9.28 0.001612 0.012089
GO:0004088 carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity 1.47% (1/68) 9.28 0.001612 0.012089
GO:0005848 mRNA cleavage stimulating factor complex 1.47% (1/68) 9.28 0.001612 0.012089
GO:0004639 phosphoribosylaminoimidazolesuccinocarboxamide synthase activity 1.47% (1/68) 9.28 0.001612 0.012089
GO:0004573 Glc3Man9GlcNAc2 oligosaccharide glucosidase activity 1.47% (1/68) 9.28 0.001612 0.012089
GO:0031348 negative regulation of defense response 1.47% (1/68) 9.28 0.001612 0.012089
GO:0035598 N6-threonylcarbomyladenosine methylthiotransferase activity 1.47% (1/68) 9.28 0.001612 0.012089
GO:0006399 tRNA metabolic process 4.41% (3/68) 3.83 0.001265 0.012166
GO:1902494 catalytic complex 5.88% (4/68) 2.94 0.001868 0.013737
GO:0009064 glutamine family amino acid metabolic process 2.94% (2/68) 5.15 0.001472 0.013796
GO:0006400 tRNA modification 2.94% (2/68) 4.88 0.002114 0.015245
GO:1901605 alpha-amino acid metabolic process 4.41% (3/68) 3.52 0.00232 0.016412
GO:0015926 glucosidase activity 1.47% (1/68) 8.28 0.003221 0.018873
GO:0006884 cell volume homeostasis 1.47% (1/68) 8.28 0.003221 0.018873
GO:0008361 regulation of cell size 1.47% (1/68) 8.28 0.003221 0.018873
GO:0008296 3'-5'-DNA exonuclease activity 1.47% (1/68) 8.28 0.003221 0.018873
GO:0034709 methylosome 1.47% (1/68) 8.28 0.003221 0.018873
GO:0050497 alkylthioltransferase activity 1.47% (1/68) 8.28 0.003221 0.018873
GO:0034715 pICln-Sm protein complex 1.47% (1/68) 8.28 0.003221 0.018873
GO:0035596 methylthiotransferase activity 1.47% (1/68) 8.28 0.003221 0.018873
GO:0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity 1.47% (1/68) 8.28 0.003221 0.018873
GO:0032991 protein-containing complex 10.29% (7/68) 1.89 0.002786 0.019348
GO:0005634 nucleus 5.88% (4/68) 2.68 0.003544 0.020445
GO:0016782 transferase activity, transferring sulphur-containing groups 2.94% (2/68) 4.6 0.003101 0.021146
GO:0016866 intramolecular transferase activity 2.94% (2/68) 4.47 0.003727 0.021174
GO:0043167 ion binding 25.0% (17/68) 0.99 0.003912 0.021893
GO:0043412 macromolecule modification 14.71% (10/68) 1.41 0.004098 0.022598
GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity 1.47% (1/68) 7.69 0.004828 0.024465
GO:0008534 oxidized purine nucleobase lesion DNA N-glycosylase activity 1.47% (1/68) 7.69 0.004828 0.024465
GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity 1.47% (1/68) 7.69 0.004828 0.024465
GO:0000702 oxidized base lesion DNA N-glycosylase activity 1.47% (1/68) 7.69 0.004828 0.024465
GO:0006529 asparagine biosynthetic process 1.47% (1/68) 7.69 0.004828 0.024465
GO:0006528 asparagine metabolic process 1.47% (1/68) 7.69 0.004828 0.024465
GO:0042274 ribosomal small subunit biogenesis 1.47% (1/68) 7.28 0.006432 0.030922
GO:0033588 elongator holoenzyme complex 1.47% (1/68) 7.28 0.006432 0.030922
GO:0030870 Mre11 complex 1.47% (1/68) 7.28 0.006432 0.030922
GO:0006281 DNA repair 4.41% (3/68) 3.0 0.006325 0.031623
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 2.94% (2/68) 4.01 0.006928 0.032476
GO:0005515 protein binding 20.59% (14/68) 1.04 0.006915 0.032822
GO:0140513 nuclear protein-containing complex 4.41% (3/68) 2.94 0.007101 0.032873
GO:0000375 RNA splicing, via transesterification reactions 2.94% (2/68) 3.94 0.00764 0.034939
GO:0016895 DNA exonuclease activity, producing 5'-phosphomonoesters 1.47% (1/68) 6.96 0.008033 0.035029
GO:0000178 exosome (RNase complex) 1.47% (1/68) 6.96 0.008033 0.035029
GO:0004529 DNA exonuclease activity 1.47% (1/68) 6.96 0.008033 0.035029
GO:0045292 mRNA cis splicing, via spliceosome 1.47% (1/68) 6.96 0.008033 0.035029
GO:1901566 organonitrogen compound biosynthetic process 7.35% (5/68) 2.0 0.008353 0.036004
GO:0004520 DNA endonuclease activity 1.47% (1/68) 6.69 0.009632 0.038023
GO:0006541 glutamine metabolic process 1.47% (1/68) 6.69 0.009632 0.038023
GO:0035145 exon-exon junction complex 1.47% (1/68) 6.69 0.009632 0.038023
GO:1905354 exoribonuclease complex 1.47% (1/68) 6.69 0.009632 0.038023
GO:0005849 mRNA cleavage factor complex 1.47% (1/68) 6.69 0.009632 0.038023
GO:0008168 methyltransferase activity 4.41% (3/68) 2.77 0.009854 0.038097
GO:0032259 methylation 2.94% (2/68) 3.75 0.009759 0.038122
GO:0006164 purine nucleotide biosynthetic process 2.94% (2/68) 3.72 0.010169 0.038521
GO:1901363 heterocyclic compound binding 17.65% (12/68) 1.08 0.010117 0.038714
GO:0008380 RNA splicing 2.94% (2/68) 3.71 0.010377 0.038915
GO:0055086 nucleobase-containing small molecule metabolic process 4.41% (3/68) 2.8 0.00928 0.039544
GO:0036094 small molecule binding 17.65% (12/68) 1.07 0.010668 0.03961
GO:0043227 membrane-bounded organelle 5.88% (4/68) 2.27 0.009599 0.039994
GO:0043231 intracellular membrane-bounded organelle 5.88% (4/68) 2.27 0.009599 0.039994
GO:0016741 transferase activity, transferring one-carbon groups 4.41% (3/68) 2.69 0.011487 0.040638
GO:0140657 ATP-dependent activity 5.88% (4/68) 2.2 0.011272 0.040645
GO:0044281 small molecule metabolic process 7.35% (5/68) 1.89 0.011381 0.040647
GO:0000373 Group II intron splicing 1.47% (1/68) 6.47 0.011229 0.040882
GO:0006189 'de novo' IMP biosynthetic process 1.47% (1/68) 6.47 0.011229 0.040882
GO:0002098 tRNA wobble uridine modification 1.47% (1/68) 6.28 0.012823 0.043321
GO:0018202 peptidyl-histidine modification 1.47% (1/68) 6.28 0.012823 0.043321
GO:0017183 protein histidyl modification to diphthamide 1.47% (1/68) 6.28 0.012823 0.043321
GO:0006520 amino acid metabolic process 4.41% (3/68) 2.64 0.012582 0.044096
GO:0072522 purine-containing compound biosynthetic process 2.94% (2/68) 3.55 0.012788 0.044403
GO:0004536 DNA nuclease activity 1.47% (1/68) 6.11 0.014414 0.047835
GO:0002097 tRNA wobble base modification 1.47% (1/68) 6.11 0.014414 0.047835
GO:0048585 negative regulation of response to stimulus 1.47% (1/68) 5.82 0.01759 0.04886
GO:0090066 regulation of anatomical structure size 1.47% (1/68) 5.82 0.01759 0.04886
GO:0000209 protein polyubiquitination 1.47% (1/68) 5.82 0.01759 0.04886
GO:0016553 base conversion or substitution editing 1.47% (1/68) 5.82 0.01759 0.04886
GO:0005829 cytosol 1.47% (1/68) 5.82 0.01759 0.04886
GO:0032535 regulation of cellular component size 1.47% (1/68) 5.82 0.01759 0.04886
GO:0016783 sulfurtransferase activity 1.47% (1/68) 5.82 0.01759 0.04886
GO:0042026 protein refolding 1.47% (1/68) 5.82 0.01759 0.04886
GO:0009127 purine nucleoside monophosphate biosynthetic process 1.47% (1/68) 5.82 0.01759 0.04886
GO:0009168 purine ribonucleoside monophosphate biosynthetic process 1.47% (1/68) 5.82 0.01759 0.04886
GO:0009167 purine ribonucleoside monophosphate metabolic process 1.47% (1/68) 5.82 0.01759 0.04886
GO:0009126 purine nucleoside monophosphate metabolic process 1.47% (1/68) 5.82 0.01759 0.04886
GO:1901607 alpha-amino acid biosynthetic process 2.94% (2/68) 3.43 0.014924 0.049092
GO:0008652 amino acid biosynthetic process 2.94% (2/68) 3.29 0.017993 0.049612
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (68) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms