Coexpression cluster: Cluster_328 (Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003676 nucleic acid binding 28.07% (16/57) 2.11 0.0 5.8e-05
GO:0140097 catalytic activity, acting on DNA 10.53% (6/57) 4.47 0.0 8.5e-05
GO:0000775 chromosome, centromeric region 3.51% (2/57) 8.95 5e-06 0.000471
GO:0005575 cellular_component 28.07% (16/57) 1.75 1.1e-05 0.00049
GO:0006259 DNA metabolic process 10.53% (6/57) 3.67 8e-06 0.000522
GO:0098687 chromosomal region 3.51% (2/57) 8.53 1.1e-05 0.000565
GO:0140640 catalytic activity, acting on a nucleic acid 12.28% (7/57) 2.99 2.7e-05 0.000889
GO:0032991 protein-containing complex 15.79% (9/57) 2.51 2.6e-05 0.000975
GO:0003677 DNA binding 15.79% (9/57) 2.25 0.000105 0.003059
GO:0005634 nucleus 8.77% (5/57) 3.26 0.000177 0.004231
GO:0016853 isomerase activity 7.02% (4/57) 3.88 0.000162 0.004263
GO:0006725 cellular aromatic compound metabolic process 15.79% (9/57) 2.11 0.000216 0.004743
GO:1901360 organic cyclic compound metabolic process 15.79% (9/57) 2.08 0.000249 0.005046
GO:0006281 DNA repair 7.02% (4/57) 3.67 0.00028 0.005261
GO:0006974 DNA damage response 7.02% (4/57) 3.62 0.000318 0.005583
GO:0005488 binding 49.12% (28/57) 0.85 0.000348 0.00572
GO:0015036 disulfide oxidoreductase activity 3.51% (2/57) 6.14 0.00037 0.005731
GO:0006139 nucleobase-containing compound metabolic process 14.04% (8/57) 2.1 0.000513 0.007108
GO:0033554 cellular response to stress 7.02% (4/57) 3.45 0.000503 0.007354
GO:0043231 intracellular membrane-bounded organelle 8.77% (5/57) 2.85 0.000654 0.007482
GO:0043227 membrane-bounded organelle 8.77% (5/57) 2.85 0.000654 0.007482
GO:0051716 cellular response to stimulus 7.02% (4/57) 3.4 0.000577 0.007581
GO:0090304 nucleic acid metabolic process 12.28% (7/57) 2.25 0.000647 0.008101
GO:1903046 meiotic cell cycle process 3.51% (2/57) 5.58 0.000813 0.008226
GO:0140657 ATP-dependent activity 8.77% (5/57) 2.78 0.000809 0.008516
GO:0097159 organic cyclic compound binding 33.33% (19/57) 1.08 0.000794 0.008697
GO:0046483 heterocycle metabolic process 14.04% (8/57) 1.97 0.000907 0.008835
GO:0008094 ATP-dependent activity, acting on DNA 5.26% (3/57) 3.92 0.001057 0.009924
GO:0097506 deaminated base DNA N-glycosylase activity 1.75% (1/57) 9.53 0.001351 0.011462
GO:0004844 uracil DNA N-glycosylase activity 1.75% (1/57) 9.53 0.001351 0.011462
GO:0050220 prostaglandin-E synthase activity 1.75% (1/57) 9.53 0.001351 0.011462
GO:0140658 ATP-dependent chromatin remodeler activity 3.51% (2/57) 5.17 0.001422 0.011684
GO:0016667 oxidoreductase activity, acting on a sulfur group of donors 3.51% (2/57) 5.04 0.00171 0.013631
GO:0009987 cellular process 33.33% (19/57) 0.99 0.001804 0.013952
GO:0034086 maintenance of sister chromatid cohesion 1.75% (1/57) 8.53 0.0027 0.01821
GO:0045144 meiotic sister chromatid segregation 1.75% (1/57) 8.53 0.0027 0.01821
GO:0034090 maintenance of meiotic sister chromatid cohesion 1.75% (1/57) 8.53 0.0027 0.01821
GO:0032299 ribonuclease H2 complex 1.75% (1/57) 8.53 0.0027 0.01821
GO:0005667 transcription regulator complex 3.51% (2/57) 4.58 0.003219 0.01969
GO:0032993 protein-DNA complex 3.51% (2/57) 4.58 0.003219 0.01969
GO:0003723 RNA binding 8.77% (5/57) 2.24 0.004063 0.019789
GO:0016866 intramolecular transferase activity 3.51% (2/57) 4.72 0.002635 0.019803
GO:0006338 chromatin remodeling 3.51% (2/57) 4.62 0.003019 0.019847
GO:0000786 nucleosome 3.51% (2/57) 4.6 0.003118 0.020002
GO:0031213 RSF complex 1.75% (1/57) 7.95 0.004048 0.020086
GO:0000278 mitotic cell cycle 1.75% (1/57) 7.95 0.004048 0.020086
GO:0031010 ISWI-type complex 1.75% (1/57) 7.95 0.004048 0.020086
GO:0043240 Fanconi anaemia nuclear complex 1.75% (1/57) 7.95 0.004048 0.020086
GO:0070192 chromosome organization involved in meiotic cell cycle 1.75% (1/57) 7.95 0.004048 0.020086
GO:0035312 5'-3' DNA exonuclease activity 1.75% (1/57) 7.95 0.004048 0.020086
GO:0031491 nucleosome binding 1.75% (1/57) 7.95 0.004048 0.020086
GO:0034641 cellular nitrogen compound metabolic process 14.04% (8/57) 1.66 0.003585 0.020949
GO:0022414 reproductive process 3.51% (2/57) 4.51 0.003532 0.021111
GO:0006325 chromatin organization 3.51% (2/57) 4.44 0.003858 0.022059
GO:0071824 protein-DNA complex organization 3.51% (2/57) 4.19 0.005426 0.023395
GO:0045132 meiotic chromosome segregation 1.75% (1/57) 7.53 0.005393 0.023641
GO:0098813 nuclear chromosome segregation 1.75% (1/57) 7.53 0.005393 0.023641
GO:0046417 chorismate metabolic process 1.75% (1/57) 7.53 0.005393 0.023641
GO:0004106 chorismate mutase activity 1.75% (1/57) 7.53 0.005393 0.023641
GO:0000819 sister chromatid segregation 1.75% (1/57) 7.53 0.005393 0.023641
GO:0006260 DNA replication 3.51% (2/57) 4.25 0.005042 0.024111
GO:0016895 DNA exonuclease activity, producing 5'-phosphomonoesters 1.75% (1/57) 7.21 0.006737 0.027261
GO:0004529 DNA exonuclease activity 1.75% (1/57) 7.21 0.006737 0.027261
GO:0000808 origin recognition complex 1.75% (1/57) 7.21 0.006737 0.027261
GO:0022402 cell cycle process 3.51% (2/57) 4.06 0.006513 0.027629
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding 1.75% (1/57) 6.95 0.00808 0.030356
GO:0004362 glutathione-disulfide reductase (NADP) activity 1.75% (1/57) 6.95 0.00808 0.030356
GO:0007143 female meiotic nuclear division 1.75% (1/57) 6.95 0.00808 0.030356
GO:0036297 interstrand cross-link repair 1.75% (1/57) 6.95 0.00808 0.030356
GO:0008409 5'-3' exonuclease activity 1.75% (1/57) 6.95 0.00808 0.030356
GO:0043229 intracellular organelle 8.77% (5/57) 1.96 0.009172 0.033503
GO:0043226 organelle 8.77% (5/57) 1.96 0.009172 0.033503
GO:1902494 catalytic complex 5.26% (3/57) 2.78 0.009589 0.034548
GO:0017022 myosin binding 1.75% (1/57) 6.53 0.010758 0.037726
GO:0015038 glutathione disulfide oxidoreductase activity 1.75% (1/57) 6.53 0.010758 0.037726
GO:0007017 microtubule-based process 3.51% (2/57) 3.66 0.011018 0.038127
GO:0008150 biological_process 43.86% (25/57) 0.6 0.011277 0.038519
GO:0004536 DNA nuclease activity 1.75% (1/57) 6.36 0.012095 0.039763
GO:0007049 cell cycle 1.75% (1/57) 6.36 0.012095 0.039763
GO:0007059 chromosome segregation 1.75% (1/57) 6.36 0.012095 0.039763
GO:0016043 cellular component organization 7.02% (4/57) 2.15 0.012627 0.041
GO:0140013 meiotic nuclear division 1.75% (1/57) 6.07 0.014763 0.04568
GO:0022412 cellular process involved in reproduction in multicellular organism 1.75% (1/57) 6.07 0.014763 0.04568
GO:0007140 male meiotic nuclear division 1.75% (1/57) 6.07 0.014763 0.04568
GO:0000280 nuclear division 1.75% (1/57) 6.07 0.014763 0.04568
GO:0003674 molecular_function 57.89% (33/57) 0.44 0.015062 0.04606
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (57) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms