Coexpression cluster: Cluster_321 (Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0016192 vesicle-mediated transport 6.5% (8/123) 3.49 1e-06 0.00035
GO:0009987 cellular process 33.33% (41/123) 0.99 6e-06 0.001608
GO:0007034 vacuolar transport 2.44% (3/123) 5.2 7.5e-05 0.006559
GO:0009057 macromolecule catabolic process 4.88% (6/123) 3.02 0.000106 0.006939
GO:1901565 organonitrogen compound catabolic process 4.07% (5/123) 3.47 9.6e-05 0.007158
GO:0009056 catabolic process 6.5% (8/123) 2.24 0.000311 0.007398
GO:0016482 cytosolic transport 1.63% (2/123) 6.25 0.000299 0.007473
GO:0042147 retrograde transport, endosome to Golgi 1.63% (2/123) 6.25 0.000299 0.007473
GO:0006807 nitrogen compound metabolic process 24.39% (30/123) 0.95 0.000258 0.007498
GO:0051234 establishment of localization 10.57% (13/123) 1.62 0.000339 0.007717
GO:0046483 heterocycle metabolic process 11.38% (14/123) 1.67 0.000133 0.007727
GO:0051649 establishment of localization in cell 4.88% (6/123) 3.11 7.4e-05 0.007773
GO:0032787 monocarboxylic acid metabolic process 4.07% (5/123) 3.2 0.000224 0.007822
GO:0030163 protein catabolic process 2.44% (3/123) 4.61 0.000255 0.007874
GO:1901575 organic substance catabolic process 6.5% (8/123) 2.3 0.000243 0.007947
GO:1901360 organic cyclic compound metabolic process 11.38% (14/123) 1.61 0.000213 0.007977
GO:0034641 cellular nitrogen compound metabolic process 12.2% (15/123) 1.45 0.000383 0.008029
GO:1901135 carbohydrate derivative metabolic process 4.88% (6/123) 2.85 0.000202 0.008124
GO:0006810 transport 10.57% (13/123) 1.63 0.000299 0.008243
GO:0051179 localization 10.57% (13/123) 1.6 0.000381 0.008309
GO:0005783 endoplasmic reticulum 2.44% (3/123) 4.84 0.000161 0.008433
GO:0044281 small molecule metabolic process 8.13% (10/123) 2.03 0.000181 0.008613
GO:0140101 catalytic activity, acting on a tRNA 3.25% (4/123) 3.81 0.000201 0.008781
GO:0051641 cellular localization 5.69% (7/123) 2.88 5.2e-05 0.009066
GO:0046907 intracellular transport 4.88% (6/123) 3.12 7.1e-05 0.009275
GO:0006725 cellular aromatic compound metabolic process 10.57% (13/123) 1.53 0.000606 0.012208
GO:0004843 cysteine-type deubiquitinase activity 2.44% (3/123) 4.17 0.000631 0.012241
GO:0006139 nucleobase-containing compound metabolic process 9.76% (12/123) 1.58 0.000736 0.013775
GO:1901137 carbohydrate derivative biosynthetic process 3.25% (4/123) 3.24 0.000885 0.014495
GO:0006082 organic acid metabolic process 5.69% (7/123) 2.2 0.000882 0.014907
GO:0043436 oxoacid metabolic process 5.69% (7/123) 2.2 0.000872 0.015234
GO:0019752 carboxylic acid metabolic process 5.69% (7/123) 2.21 0.000843 0.01524
GO:0033866 nucleoside bisphosphate biosynthetic process 1.63% (2/123) 5.33 0.001114 0.016681
GO:0034030 ribonucleoside bisphosphate biosynthetic process 1.63% (2/123) 5.33 0.001114 0.016681
GO:0034033 purine nucleoside bisphosphate biosynthetic process 1.63% (2/123) 5.33 0.001114 0.016681
GO:0009150 purine ribonucleotide metabolic process 3.25% (4/123) 3.1 0.001274 0.017119
GO:0005575 cellular_component 17.07% (21/123) 1.03 0.001261 0.017389
GO:1901564 organonitrogen compound metabolic process 19.51% (24/123) 0.95 0.001238 0.017534
GO:0019637 organophosphate metabolic process 4.88% (6/123) 2.35 0.001217 0.017708
GO:0101005 deubiquitinase activity 2.44% (3/123) 3.76 0.001456 0.019068
GO:0000956 nuclear-transcribed mRNA catabolic process 1.63% (2/123) 5.03 0.001707 0.01945
GO:0009259 ribonucleotide metabolic process 3.25% (4/123) 3.03 0.001524 0.019478
GO:0019783 ubiquitin-like protein peptidase activity 2.44% (3/123) 3.69 0.001687 0.019642
GO:0051603 proteolysis involved in protein catabolic process 3.25% (4/123) 3.0 0.001661 0.019781
GO:0009152 purine ribonucleotide biosynthetic process 2.44% (3/123) 3.7 0.001627 0.019827
GO:0019693 ribose phosphate metabolic process 3.25% (4/123) 3.0 0.001626 0.020286
GO:0008150 biological_process 41.46% (51/123) 0.52 0.00188 0.02096
GO:0018130 heterocycle biosynthetic process 4.88% (6/123) 2.22 0.001961 0.021407
GO:0009448 gamma-aminobutyric acid metabolic process 0.81% (1/123) 8.42 0.002915 0.021517
GO:0018344 protein geranylgeranylation 0.81% (1/123) 8.42 0.002915 0.021517
GO:0030906 retromer, cargo-selective complex 0.81% (1/123) 8.42 0.002915 0.021517
GO:0004663 Rab geranylgeranyltransferase activity 0.81% (1/123) 8.42 0.002915 0.021517
GO:0032422 purine-rich negative regulatory element binding 0.81% (1/123) 8.42 0.002915 0.021517
GO:0004661 protein geranylgeranyltransferase activity 0.81% (1/123) 8.42 0.002915 0.021517
GO:0009450 gamma-aminobutyric acid catabolic process 0.81% (1/123) 8.42 0.002915 0.021517
GO:0071108 protein K48-linked deubiquitination 0.81% (1/123) 8.42 0.002915 0.021517
GO:0010024 phytochromobilin biosynthetic process 0.81% (1/123) 8.42 0.002915 0.021517
GO:0008193 tRNA guanylyltransferase activity 0.81% (1/123) 8.42 0.002915 0.021517
GO:0009013 succinate-semialdehyde dehydrogenase [NAD(P)+] activity 0.81% (1/123) 8.42 0.002915 0.021517
GO:0004076 biotin synthase activity 0.81% (1/123) 8.42 0.002915 0.021517
GO:0051202 phytochromobilin metabolic process 0.81% (1/123) 8.42 0.002915 0.021517
GO:0050897 cobalt ion binding 0.81% (1/123) 8.42 0.002915 0.021517
GO:0097361 CIA complex 0.81% (1/123) 8.42 0.002915 0.021517
GO:1901362 organic cyclic compound biosynthetic process 4.88% (6/123) 2.08 0.003132 0.021882
GO:0016197 endosomal transport 1.63% (2/123) 4.9 0.002049 0.021914
GO:0071704 organic substance metabolic process 26.02% (32/123) 0.7 0.003097 0.021933
GO:0046390 ribose phosphate biosynthetic process 2.44% (3/123) 3.56 0.002144 0.022031
GO:0009260 ribonucleotide biosynthetic process 2.44% (3/123) 3.56 0.002144 0.022031
GO:0006402 mRNA catabolic process 1.63% (2/123) 4.61 0.003033 0.022071
GO:0072521 purine-containing compound metabolic process 3.25% (4/123) 2.75 0.003078 0.022093
GO:0019205 nucleobase-containing compound kinase activity 1.63% (2/123) 4.52 0.003477 0.023971
GO:0006163 purine nucleotide metabolic process 3.25% (4/123) 2.84 0.00243 0.024483
GO:0010498 proteasomal protein catabolic process 1.63% (2/123) 4.72 0.002617 0.025398
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process 1.63% (2/123) 4.72 0.002617 0.025398
GO:0044238 primary metabolic process 24.39% (30/123) 0.71 0.003781 0.025399
GO:0006164 purine nucleotide biosynthetic process 2.44% (3/123) 3.45 0.002672 0.025455
GO:0072522 purine-containing compound biosynthetic process 2.44% (3/123) 3.28 0.003749 0.025514
GO:0034655 nucleobase-containing compound catabolic process 2.44% (3/123) 3.27 0.003849 0.025532
GO:0090407 organophosphate biosynthetic process 3.25% (4/123) 2.65 0.003898 0.025534
GO:0043231 intracellular membrane-bounded organelle 4.88% (6/123) 2.0 0.004071 0.025702
GO:0043227 membrane-bounded organelle 4.88% (6/123) 2.0 0.004071 0.025702
GO:0034032 purine nucleoside bisphosphate metabolic process 1.63% (2/123) 4.33 0.00445 0.025907
GO:0033875 ribonucleoside bisphosphate metabolic process 1.63% (2/123) 4.33 0.00445 0.025907
GO:0033865 nucleoside bisphosphate metabolic process 1.63% (2/123) 4.33 0.00445 0.025907
GO:0006753 nucleoside phosphate metabolic process 3.25% (4/123) 2.62 0.004224 0.026039
GO:0009117 nucleotide metabolic process 3.25% (4/123) 2.64 0.004026 0.026048
GO:0019200 carbohydrate kinase activity 1.63% (2/123) 4.38 0.004196 0.026175
GO:0006790 sulfur compound metabolic process 2.44% (3/123) 3.2 0.004374 0.026343
GO:0016776 phosphotransferase activity, phosphate group as acceptor 1.63% (2/123) 4.67 0.002821 0.0264
GO:0008152 metabolic process 26.83% (33/123) 0.65 0.004373 0.026646
GO:0044270 cellular nitrogen compound catabolic process 2.44% (3/123) 3.16 0.004708 0.026817
GO:0046700 heterocycle catabolic process 2.44% (3/123) 3.16 0.004708 0.026817
GO:0006768 biotin metabolic process 0.81% (1/123) 7.42 0.005822 0.029912
GO:1900034 regulation of cellular response to heat 0.81% (1/123) 7.42 0.005822 0.029912
GO:0006000 fructose metabolic process 0.81% (1/123) 7.42 0.005822 0.029912
GO:0009102 biotin biosynthetic process 0.81% (1/123) 7.42 0.005822 0.029912
GO:0003873 6-phosphofructo-2-kinase activity 0.81% (1/123) 7.42 0.005822 0.029912
GO:0006003 fructose 2,6-bisphosphate metabolic process 0.81% (1/123) 7.42 0.005822 0.029912
GO:0042720 mitochondrial inner membrane peptidase complex 0.81% (1/123) 7.42 0.005822 0.029912
GO:0009165 nucleotide biosynthetic process 2.44% (3/123) 3.08 0.005548 0.0306
GO:1901293 nucleoside phosphate biosynthetic process 2.44% (3/123) 3.08 0.005548 0.0306
GO:0006401 RNA catabolic process 1.63% (2/123) 4.17 0.005534 0.03118
GO:0097573 obsolete glutathione oxidoreductase activity 1.63% (2/123) 4.06 0.006418 0.032652
GO:0043229 intracellular organelle 6.5% (8/123) 1.53 0.006872 0.034292
GO:0043226 organelle 6.5% (8/123) 1.53 0.006872 0.034292
GO:0032991 protein-containing complex 7.32% (9/123) 1.4 0.007507 0.03711
GO:0055086 nucleobase-containing small molecule metabolic process 3.25% (4/123) 2.36 0.00791 0.038735
GO:0072546 EMC complex 0.81% (1/123) 6.84 0.008721 0.039395
GO:0000814 ESCRT II complex 0.81% (1/123) 6.84 0.008721 0.039395
GO:0034982 mitochondrial protein processing 0.81% (1/123) 6.84 0.008721 0.039395
GO:0006627 protein processing involved in protein targeting to mitochondrion 0.81% (1/123) 6.84 0.008721 0.039395
GO:0004594 pantothenate kinase activity 0.81% (1/123) 6.84 0.008721 0.039395
GO:0061077 chaperone-mediated protein folding 0.81% (1/123) 6.84 0.008721 0.039395
GO:0004316 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity 0.81% (1/123) 6.84 0.008721 0.039395
GO:0008192 RNA guanylyltransferase activity 0.81% (1/123) 6.84 0.008721 0.039395
GO:0044237 cellular metabolic process 18.7% (23/123) 0.76 0.008308 0.040311
GO:0019439 aromatic compound catabolic process 2.44% (3/123) 2.82 0.009078 0.040656
GO:1901361 organic cyclic compound catabolic process 2.44% (3/123) 2.81 0.009248 0.041065
GO:0019438 aromatic compound biosynthetic process 4.07% (5/123) 1.96 0.009729 0.042841
GO:0043632 modification-dependent macromolecule catabolic process 2.44% (3/123) 2.73 0.010672 0.044383
GO:0006511 ubiquitin-dependent protein catabolic process 2.44% (3/123) 2.73 0.010672 0.044383
GO:0019941 modification-dependent protein catabolic process 2.44% (3/123) 2.73 0.010672 0.044383
GO:0098796 membrane protein complex 3.25% (4/123) 2.25 0.010239 0.044711
GO:0006508 proteolysis 6.5% (8/123) 1.42 0.010569 0.045027
GO:0016579 protein deubiquitination 1.63% (2/123) 3.69 0.010543 0.045284
GO:0016071 mRNA metabolic process 2.44% (3/123) 2.74 0.010488 0.045417
GO:0043650 dicarboxylic acid biosynthetic process 0.81% (1/123) 6.42 0.011611 0.046445
GO:0032981 mitochondrial respiratory chain complex I assembly 0.81% (1/123) 6.42 0.011611 0.046445
GO:0015937 coenzyme A biosynthetic process 0.81% (1/123) 6.42 0.011611 0.046445
GO:0016636 oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor 0.81% (1/123) 6.42 0.011611 0.046445
GO:0010257 NADH dehydrogenase complex assembly 0.81% (1/123) 6.42 0.011611 0.046445
GO:0070646 protein modification by small protein removal 1.63% (2/123) 3.61 0.011716 0.046509
GO:0044271 cellular nitrogen compound biosynthetic process 5.69% (7/123) 1.51 0.011923 0.046976
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (123) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms