Coexpression cluster: Cluster_418 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0071439 clathrin complex 7.94% (5/63) 10.26 0.0 0.0
GO:0032051 clathrin light chain binding 7.94% (5/63) 10.26 0.0 0.0
GO:0005662 DNA replication factor A complex 9.52% (6/63) 8.6 0.0 0.0
GO:0043047 single-stranded telomeric DNA binding 9.52% (6/63) 8.2 0.0 0.0
GO:0098847 sequence-specific single stranded DNA binding 9.52% (6/63) 8.2 0.0 0.0
GO:0007004 telomere maintenance via telomerase 9.52% (6/63) 8.25 0.0 0.0
GO:0006278 RNA-templated DNA biosynthetic process 9.52% (6/63) 8.25 0.0 0.0
GO:0003684 damaged DNA binding 11.11% (7/63) 7.06 0.0 0.0
GO:0010833 telomere maintenance via telomere lengthening 9.52% (6/63) 7.97 0.0 0.0
GO:0051321 meiotic cell cycle 9.52% (6/63) 7.65 0.0 0.0
GO:0042162 telomeric DNA binding 9.52% (6/63) 7.19 0.0 0.0
GO:0071897 DNA biosynthetic process 9.52% (6/63) 7.06 0.0 0.0
GO:0006289 nucleotide-excision repair 9.52% (6/63) 6.99 0.0 0.0
GO:0007049 cell cycle 9.52% (6/63) 6.35 0.0 0.0
GO:0019438 aromatic compound biosynthetic process 17.46% (11/63) 3.92 0.0 0.0
GO:0032200 telomere organization 9.52% (6/63) 6.23 0.0 0.0
GO:0000723 telomere maintenance 9.52% (6/63) 6.23 0.0 0.0
GO:0006898 receptor-mediated endocytosis 7.94% (5/63) 7.12 0.0 0.0
GO:0030276 clathrin binding 7.94% (5/63) 7.08 0.0 0.0
GO:0070161 anchoring junction 9.52% (6/63) 5.78 0.0 0.0
GO:0030054 cell junction 9.52% (6/63) 5.77 0.0 0.0
GO:0005911 cell-cell junction 9.52% (6/63) 5.79 0.0 0.0
GO:0009506 plasmodesma 9.52% (6/63) 5.8 0.0 0.0
GO:0008171 O-methyltransferase activity 7.94% (5/63) 6.56 0.0 0.0
GO:0000724 double-strand break repair via homologous recombination 9.52% (6/63) 5.64 0.0 0.0
GO:0000725 recombinational repair 9.52% (6/63) 5.56 0.0 0.0
GO:0003697 single-stranded DNA binding 9.52% (6/63) 5.55 0.0 0.0
GO:0006260 DNA replication 9.52% (6/63) 5.44 0.0 0.0
GO:0006897 endocytosis 7.94% (5/63) 6.04 0.0 0.0
GO:0006302 double-strand break repair 9.52% (6/63) 5.03 0.0 0.0
GO:0098657 import into cell 7.94% (5/63) 5.66 0.0 0.0
GO:0022414 reproductive process 9.52% (6/63) 4.84 0.0 0.0
GO:0006310 DNA recombination 9.52% (6/63) 4.81 0.0 1e-06
GO:0051276 chromosome organization 9.52% (6/63) 4.35 1e-06 3e-06
GO:0006281 DNA repair 11.11% (7/63) 3.83 1e-06 4e-06
GO:0006974 DNA damage response 11.11% (7/63) 3.7 1e-06 7e-06
GO:0006950 response to stress 19.05% (12/63) 2.41 2e-06 1.2e-05
GO:0044249 cellular biosynthetic process 17.46% (11/63) 2.53 3e-06 1.5e-05
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity 7.94% (5/63) 4.52 3e-06 1.6e-05
GO:0032259 methylation 7.94% (5/63) 4.35 5e-06 2.7e-05
GO:0005794 Golgi apparatus 7.94% (5/63) 4.24 8e-06 3.7e-05
GO:0050896 response to stimulus 19.05% (12/63) 2.23 7e-06 3.8e-05
GO:0009058 biosynthetic process 17.46% (11/63) 2.34 1e-05 4.6e-05
GO:0033554 cellular response to stress 11.11% (7/63) 3.2 1.2e-05 5.4e-05
GO:0051716 cellular response to stimulus 11.11% (7/63) 3.16 1.4e-05 6.3e-05
GO:0016192 vesicle-mediated transport 9.52% (6/63) 3.54 1.4e-05 6.3e-05
GO:0034654 nucleobase-containing compound biosynthetic process 9.52% (6/63) 3.48 1.8e-05 7.7e-05
GO:0006886 intracellular protein transport 7.94% (5/63) 3.89 2.4e-05 0.000104
GO:0008168 methyltransferase activity 7.94% (5/63) 3.77 3.6e-05 0.000151
GO:0043565 sequence-specific DNA binding 9.52% (6/63) 3.24 4.4e-05 0.000175
GO:0016741 transferase activity, transferring one-carbon groups 7.94% (5/63) 3.71 4.3e-05 0.000176
GO:0009507 chloroplast 7.94% (5/63) 3.71 4.3e-05 0.000177
GO:0009536 plastid 7.94% (5/63) 3.67 4.8e-05 0.000189
GO:0018130 heterocycle biosynthetic process 9.52% (6/63) 3.11 7e-05 0.000264
GO:0015031 protein transport 7.94% (5/63) 3.55 7.2e-05 0.000264
GO:0006259 DNA metabolic process 11.11% (7/63) 2.79 7e-05 0.000268
GO:0006725 cellular aromatic compound metabolic process 19.05% (12/63) 1.89 7.9e-05 0.000287
GO:0098796 membrane protein complex 7.94% (5/63) 3.51 8.4e-05 0.000298
GO:0032991 protein-containing complex 17.46% (11/63) 1.92 0.000138 0.000484
GO:0009059 macromolecule biosynthetic process 9.52% (6/63) 2.91 0.000149 0.000513
GO:1901362 organic cyclic compound biosynthetic process 9.52% (6/63) 2.89 0.000161 0.000547
GO:0045184 establishment of protein localization 7.94% (5/63) 3.25 0.000192 0.000642
GO:0006996 organelle organization 9.52% (6/63) 2.75 0.000271 0.00089
GO:0033036 macromolecule localization 7.94% (5/63) 3.08 0.000322 0.000996
GO:0070727 cellular macromolecule localization 7.94% (5/63) 3.09 0.000319 0.001002
GO:0008104 protein localization 7.94% (5/63) 3.09 0.000316 0.001007
GO:0046907 intracellular transport 7.94% (5/63) 3.09 0.000311 0.001007
GO:0051649 establishment of localization in cell 7.94% (5/63) 3.04 0.000363 0.00109
GO:0043231 intracellular membrane-bounded organelle 20.63% (13/63) 1.56 0.000371 0.001098
GO:0140513 nuclear protein-containing complex 9.52% (6/63) 2.67 0.000361 0.001098
GO:0044271 cellular nitrogen compound biosynthetic process 9.52% (6/63) 2.65 0.0004 0.001149
GO:0043227 membrane-bounded organelle 20.63% (13/63) 1.55 0.000399 0.001163
GO:0071705 nitrogen compound transport 7.94% (5/63) 2.82 0.000735 0.002085
GO:0051641 cellular localization 7.94% (5/63) 2.58 0.001515 0.004074
GO:0043226 organelle 20.63% (13/63) 1.34 0.001513 0.004122
GO:0043229 intracellular organelle 20.63% (13/63) 1.34 0.001512 0.004173
GO:0005886 plasma membrane 9.52% (6/63) 2.28 0.00151 0.004223
GO:0000701 purine-specific mismatch base pair DNA N-glycosylase activity 1.59% (1/63) 9.05 0.001885 0.00476
GO:0035485 adenine/guanine mispair binding 1.59% (1/63) 9.05 0.001885 0.00476
GO:0032357 oxidized purine DNA binding 1.59% (1/63) 9.05 0.001885 0.00476
GO:0032356 oxidized DNA binding 1.59% (1/63) 9.05 0.001885 0.00476
GO:0000700 mismatch base pair DNA N-glycosylase activity 1.59% (1/63) 9.05 0.001885 0.00476
GO:0071702 organic substance transport 7.94% (5/63) 2.49 0.001994 0.004973
GO:0005634 nucleus 12.7% (8/63) 1.78 0.002203 0.00543
GO:0003677 DNA binding 11.11% (7/63) 1.92 0.002511 0.006116
GO:0030132 clathrin coat of coated pit 1.59% (1/63) 8.09 0.003663 0.008715
GO:0030130 clathrin coat of trans-Golgi network vesicle 1.59% (1/63) 8.09 0.003663 0.008715
GO:0030570 pectate lyase activity 1.59% (1/63) 7.86 0.004289 0.009866
GO:0034039 8-oxo-7,8-dihydroguanine DNA N-glycosylase activity 1.59% (1/63) 7.86 0.004289 0.009866
GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides 1.59% (1/63) 7.86 0.004289 0.009866
GO:0051721 protein phosphatase 2A binding 1.59% (1/63) 7.76 0.004603 0.01047
GO:0008534 oxidized purine nucleobase lesion DNA N-glycosylase activity 1.59% (1/63) 7.7 0.004811 0.010826
GO:0000702 oxidized base lesion DNA N-glycosylase activity 1.59% (1/63) 7.36 0.006063 0.013494
GO:0016043 cellular component organization 9.52% (6/63) 1.85 0.00642 0.014138
GO:0009607 response to biotic stimulus 7.94% (5/63) 1.99 0.008574 0.017928
GO:0044419 biological process involved in interspecies interaction between organisms 7.94% (5/63) 1.99 0.008505 0.017965
GO:0043207 response to external biotic stimulus 7.94% (5/63) 1.99 0.008476 0.018089
GO:0098542 defense response to other organism 7.94% (5/63) 1.99 0.008474 0.018271
GO:0051707 response to other organism 7.94% (5/63) 1.99 0.008474 0.018271
GO:0030118 clathrin coat 1.59% (1/63) 6.71 0.009496 0.019462
GO:0030125 clathrin vesicle coat 1.59% (1/63) 6.71 0.009496 0.019462
GO:0019903 protein phosphatase binding 1.59% (1/63) 6.62 0.010119 0.020536
GO:0006952 defense response 7.94% (5/63) 1.92 0.01053 0.020959
GO:0019902 phosphatase binding 1.59% (1/63) 6.58 0.01043 0.020962
GO:0071840 cellular component organization or biogenesis 9.52% (6/63) 1.69 0.010656 0.021008
GO:0009605 response to external stimulus 7.94% (5/63) 1.9 0.010983 0.021449
GO:0043531 ADP binding 6.35% (4/63) 2.17 0.01226 0.023717
GO:0090304 nucleic acid metabolic process 11.11% (7/63) 1.48 0.012724 0.024387
GO:0008150 biological_process 41.27% (26/63) 0.57 0.014717 0.02795
GO:0009987 cellular process 30.16% (19/63) 0.71 0.016378 0.03082
GO:1901576 organic substance biosynthetic process 9.52% (6/63) 1.54 0.017091 0.031872
GO:0035303 regulation of dephosphorylation 1.59% (1/63) 5.84 0.017256 0.031892
GO:0009734 auxin-activated signaling pathway 1.59% (1/63) 5.83 0.017462 0.031988
GO:0030983 mismatched DNA binding 1.59% (1/63) 5.37 0.02383 0.04327
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (63) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms