Coexpression cluster: Cluster_164 (Oryza sativa HCCA coexpression clusters - Wang et al (2014))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0005575 cellular_component 34.83% (31/89) 2.06 0.0 0.0
GO:0005852 eukaryotic translation initiation factor 3 complex 5.62% (5/89) 6.96 0.0 0.0
GO:0032991 protein-containing complex 17.98% (16/89) 2.69 0.0 0.0
GO:0003743 translation initiation factor activity 5.62% (5/89) 5.43 0.0 1.1e-05
GO:0003723 RNA binding 13.48% (12/89) 2.86 0.0 1.1e-05
GO:0045182 translation regulator activity 5.62% (5/89) 4.66 2e-06 8.1e-05
GO:0008152 metabolic process 38.2% (34/89) 1.16 2e-06 8.6e-05
GO:0090079 translation regulator activity, nucleic acid binding 5.62% (5/89) 4.74 1e-06 8.8e-05
GO:0008135 translation factor activity, RNA binding 5.62% (5/89) 4.74 1e-06 8.8e-05
GO:0110165 cellular anatomical entity 21.35% (19/89) 1.79 2e-06 9.5e-05
GO:0000049 tRNA binding 3.37% (3/89) 6.57 4e-06 0.000133
GO:0003676 nucleic acid binding 21.35% (19/89) 1.71 4e-06 0.000141
GO:0005737 cytoplasm 6.74% (6/89) 3.85 4e-06 0.000143
GO:0009987 cellular process 37.08% (33/89) 1.14 4e-06 0.000154
GO:1902494 catalytic complex 7.87% (7/89) 3.36 6e-06 0.000178
GO:0006807 nitrogen compound metabolic process 30.34% (27/89) 1.26 9e-06 0.000246
GO:0043227 membrane-bounded organelle 8.99% (8/89) 2.88 1.4e-05 0.000349
GO:0043231 intracellular membrane-bounded organelle 8.99% (8/89) 2.88 1.4e-05 0.000349
GO:0005839 proteasome core complex 3.37% (3/89) 5.95 1.6e-05 0.000377
GO:0006511 ubiquitin-dependent protein catabolic process 5.62% (5/89) 3.93 2e-05 0.000388
GO:0043632 modification-dependent macromolecule catabolic process 5.62% (5/89) 3.93 2e-05 0.000388
GO:0019941 modification-dependent protein catabolic process 5.62% (5/89) 3.93 2e-05 0.000388
GO:0009057 macromolecule catabolic process 6.74% (6/89) 3.49 1.7e-05 0.000394
GO:0044238 primary metabolic process 32.58% (29/89) 1.13 2.2e-05 0.000404
GO:1901564 organonitrogen compound metabolic process 25.84% (23/89) 1.35 1.9e-05 0.000409
GO:0044237 cellular metabolic process 26.97% (24/89) 1.28 2.6e-05 0.000461
GO:0008150 biological_process 49.44% (44/89) 0.78 3.4e-05 0.00052
GO:0051603 proteolysis involved in protein catabolic process 5.62% (5/89) 3.78 3.3e-05 0.000529
GO:0043226 organelle 11.24% (10/89) 2.32 3.3e-05 0.00054
GO:0043229 intracellular organelle 11.24% (10/89) 2.32 3.3e-05 0.00054
GO:0097159 organic cyclic compound binding 32.58% (29/89) 1.05 6.2e-05 0.000913
GO:0071704 organic substance metabolic process 32.58% (29/89) 1.02 8.7e-05 0.001246
GO:0030163 protein catabolic process 3.37% (3/89) 5.08 9.8e-05 0.001325
GO:0003674 molecular_function 62.92% (56/89) 0.56 9.8e-05 0.001363
GO:0005634 nucleus 6.74% (6/89) 2.88 0.000173 0.002269
GO:1901575 organic substance catabolic process 7.87% (7/89) 2.57 0.000184 0.00235
GO:0009056 catabolic process 7.87% (7/89) 2.52 0.000231 0.002862
GO:0019773 proteasome core complex, alpha-subunit complex 2.25% (2/89) 6.3 0.000286 0.00346
GO:0043170 macromolecule metabolic process 24.72% (22/89) 1.13 0.0003 0.003536
GO:1905369 endopeptidase complex 2.25% (2/89) 6.19 0.000338 0.003785
GO:1901565 organonitrogen compound catabolic process 4.49% (4/89) 3.61 0.000336 0.003852
GO:0019538 protein metabolic process 20.22% (18/89) 1.26 0.000393 0.00429
GO:0140535 intracellular protein-containing complex 4.49% (4/89) 3.45 0.000508 0.005425
GO:0005488 binding 43.82% (39/89) 0.69 0.00055 0.005737
GO:0101005 deubiquitinase activity 3.37% (3/89) 4.23 0.000571 0.005821
GO:0043022 ribosome binding 2.25% (2/89) 5.8 0.000586 0.00585
GO:0019783 ubiquitin-like protein peptidase activity 3.37% (3/89) 4.15 0.000663 0.006339
GO:0009894 regulation of catabolic process 2.25% (2/89) 5.72 0.000659 0.006432
GO:0070122 obsolete isopeptidase activity 2.25% (2/89) 5.64 0.000735 0.006616
GO:0043021 ribonucleoprotein complex binding 2.25% (2/89) 5.64 0.000735 0.006616
GO:0140492 metal-dependent deubiquitinase activity 2.25% (2/89) 5.64 0.000735 0.006616
GO:0032561 guanyl ribonucleotide binding 4.49% (4/89) 3.19 0.00101 0.008748
GO:0005525 GTP binding 4.49% (4/89) 3.19 0.00101 0.008748
GO:0019001 guanyl nucleotide binding 4.49% (4/89) 3.15 0.001122 0.009537
GO:1905368 peptidase complex 2.25% (2/89) 5.19 0.001384 0.011143
GO:0010498 proteasomal protein catabolic process 2.25% (2/89) 5.19 0.001384 0.011143
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process 2.25% (2/89) 5.19 0.001384 0.011143
GO:0098803 respiratory chain complex 2.25% (2/89) 5.08 0.001605 0.012701
GO:0042283 dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase activity 1.12% (1/89) 8.89 0.00211 0.013638
GO:0004735 pyrroline-5-carboxylate reductase activity 1.12% (1/89) 8.89 0.00211 0.013638
GO:0006906 vesicle fusion 1.12% (1/89) 8.89 0.00211 0.013638
GO:0048280 vesicle fusion with Golgi apparatus 1.12% (1/89) 8.89 0.00211 0.013638
GO:0048284 organelle fusion 1.12% (1/89) 8.89 0.00211 0.013638
GO:0048827 phyllome development 1.12% (1/89) 8.89 0.00211 0.013638
GO:0061025 membrane fusion 1.12% (1/89) 8.89 0.00211 0.013638
GO:0090174 organelle membrane fusion 1.12% (1/89) 8.89 0.00211 0.013638
GO:0010239 chloroplast mRNA processing 1.12% (1/89) 8.89 0.00211 0.013638
GO:0031425 chloroplast RNA processing 1.12% (1/89) 8.89 0.00211 0.013638
GO:0033971 hydroxyisourate hydrolase activity 1.12% (1/89) 8.89 0.00211 0.013638
GO:0048366 leaf development 1.12% (1/89) 8.89 0.00211 0.013638
GO:0044281 small molecule metabolic process 7.87% (7/89) 1.99 0.002003 0.015586
GO:0006397 mRNA processing 3.37% (3/89) 3.49 0.002505 0.015969
GO:0017111 ribonucleoside triphosphate phosphatase activity 5.62% (5/89) 2.41 0.002564 0.016124
GO:1901135 carbohydrate derivative metabolic process 4.49% (4/89) 2.73 0.003214 0.019937
GO:0016462 pyrophosphatase activity 5.62% (5/89) 2.32 0.003388 0.020735
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 5.62% (5/89) 2.29 0.003669 0.022156
GO:0016817 hydrolase activity, acting on acid anhydrides 5.62% (5/89) 2.29 0.003733 0.022253
GO:0016812 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides 1.12% (1/89) 7.89 0.004215 0.024182
GO:0019774 proteasome core complex, beta-subunit complex 1.12% (1/89) 7.89 0.004215 0.024182
GO:0000104 succinate dehydrogenase activity 1.12% (1/89) 7.89 0.004215 0.024182
GO:0016071 mRNA metabolic process 3.37% (3/89) 3.21 0.004306 0.024398
GO:0015935 small ribosomal subunit 2.25% (2/89) 4.33 0.004472 0.025033
GO:0019752 carboxylic acid metabolic process 5.62% (5/89) 2.19 0.00488 0.026985
GO:0006011 UDP-glucose metabolic process 1.12% (1/89) 7.3 0.006315 0.027092
GO:0051748 UTP-monosaccharide-1-phosphate uridylyltransferase activity 1.12% (1/89) 7.3 0.006315 0.027092
GO:0006432 phenylalanyl-tRNA aminoacylation 1.12% (1/89) 7.3 0.006315 0.027092
GO:0004826 phenylalanine-tRNA ligase activity 1.12% (1/89) 7.3 0.006315 0.027092
GO:0006561 proline biosynthetic process 1.12% (1/89) 7.3 0.006315 0.027092
GO:0003983 UTP:glucose-1-phosphate uridylyltransferase activity 1.12% (1/89) 7.3 0.006315 0.027092
GO:0043487 regulation of RNA stability 1.12% (1/89) 7.3 0.006315 0.027092
GO:1900364 negative regulation of mRNA polyadenylation 1.12% (1/89) 7.3 0.006315 0.027092
GO:0070717 poly-purine tract binding 1.12% (1/89) 7.3 0.006315 0.027092
GO:0061013 regulation of mRNA catabolic process 1.12% (1/89) 7.3 0.006315 0.027092
GO:0050686 negative regulation of mRNA processing 1.12% (1/89) 7.3 0.006315 0.027092
GO:1903312 negative regulation of mRNA metabolic process 1.12% (1/89) 7.3 0.006315 0.027092
GO:0043488 regulation of mRNA stability 1.12% (1/89) 7.3 0.006315 0.027092
GO:0031441 negative regulation of mRNA 3'-end processing 1.12% (1/89) 7.3 0.006315 0.027092
GO:0031440 regulation of mRNA 3'-end processing 1.12% (1/89) 7.3 0.006315 0.027092
GO:0008143 poly(A) binding 1.12% (1/89) 7.3 0.006315 0.027092
GO:0003727 single-stranded RNA binding 1.12% (1/89) 7.3 0.006315 0.027092
GO:0006082 organic acid metabolic process 5.62% (5/89) 2.18 0.005039 0.027209
GO:0043436 oxoacid metabolic process 5.62% (5/89) 2.19 0.004999 0.027313
GO:0016579 protein deubiquitination 2.25% (2/89) 4.16 0.005654 0.030178
GO:0036211 protein modification process 12.36% (11/89) 1.26 0.005967 0.031126
GO:0003924 GTPase activity 3.37% (3/89) 3.04 0.005944 0.031361
GO:0034641 cellular nitrogen compound metabolic process 11.24% (10/89) 1.34 0.006189 0.031918
GO:0070646 protein modification by small protein removal 2.25% (2/89) 4.08 0.006293 0.032095
GO:1990204 oxidoreductase complex 2.25% (2/89) 3.91 0.007905 0.033597
GO:0051082 unfolded protein binding 2.25% (2/89) 3.89 0.008149 0.034316
GO:0006560 proline metabolic process 1.12% (1/89) 6.89 0.008412 0.034474
GO:0031369 translation initiation factor binding 1.12% (1/89) 6.89 0.008412 0.034474
GO:0007030 Golgi organization 1.12% (1/89) 6.89 0.008412 0.034474
GO:0006139 nucleobase-containing compound metabolic process 8.99% (8/89) 1.46 0.0088 0.035744
GO:0035639 purine ribonucleoside triphosphate binding 13.48% (12/89) 1.12 0.008922 0.035924
GO:0043687 post-translational protein modification 4.49% (4/89) 2.28 0.009561 0.038162
GO:0004618 phosphoglycerate kinase activity 1.12% (1/89) 6.57 0.010504 0.038264
GO:0045271 respiratory chain complex I 1.12% (1/89) 6.57 0.010504 0.038264
GO:0030964 NADH dehydrogenase complex 1.12% (1/89) 6.57 0.010504 0.038264
GO:0005747 mitochondrial respiratory chain complex I 1.12% (1/89) 6.57 0.010504 0.038264
GO:0004084 branched-chain-amino-acid transaminase activity 1.12% (1/89) 6.57 0.010504 0.038264
GO:0050684 regulation of mRNA processing 1.12% (1/89) 6.57 0.010504 0.038264
GO:0010119 regulation of stomatal movement 1.12% (1/89) 6.57 0.010504 0.038264
GO:0016255 attachment of GPI anchor to protein 1.12% (1/89) 6.57 0.010504 0.038264
GO:1903311 regulation of mRNA metabolic process 1.12% (1/89) 6.57 0.010504 0.038264
GO:0006793 phosphorus metabolic process 11.24% (10/89) 1.23 0.010148 0.03981
GO:0043412 macromolecule modification 12.36% (11/89) 1.16 0.010079 0.039881
GO:0061578 K63-linked deubiquitinase activity 1.12% (1/89) 6.3 0.012592 0.044118
GO:0031329 regulation of cellular catabolic process 1.12% (1/89) 6.3 0.012592 0.044118
GO:0042765 GPI-anchor transamidase complex 1.12% (1/89) 6.3 0.012592 0.044118
GO:0045281 succinate dehydrogenase complex 1.12% (1/89) 6.3 0.012592 0.044118
GO:0008303 caspase complex 1.12% (1/89) 6.3 0.012592 0.044118
GO:0016043 cellular component organization 5.62% (5/89) 1.83 0.013611 0.047329
GO:0003824 catalytic activity 32.58% (29/89) 0.57 0.01384 0.047407
GO:0097367 carbohydrate derivative binding 14.61% (13/89) 0.97 0.0147 0.047515
GO:0032553 ribonucleotide binding 14.61% (13/89) 0.98 0.013833 0.047738
GO:0000502 proteasome complex 1.12% (1/89) 6.08 0.014675 0.047771
GO:0070652 HAUS complex 1.12% (1/89) 6.08 0.014675 0.047771
GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor 1.12% (1/89) 6.08 0.014675 0.047771
GO:0003725 double-stranded RNA binding 1.12% (1/89) 6.08 0.014675 0.047771
GO:0009738 abscisic acid-activated signaling pathway 1.12% (1/89) 6.08 0.014675 0.047771
GO:0016272 prefoldin complex 1.12% (1/89) 6.08 0.014675 0.047771
GO:0005515 protein binding 17.98% (16/89) 0.84 0.015127 0.048554
GO:0046483 heterocycle metabolic process 8.99% (8/89) 1.33 0.014321 0.048691
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (89) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms