Coexpression cluster: Cluster_190 (Oryza sativa HCCA coexpression clusters - Wang et al (2014))

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0009889 regulation of biosynthetic process 12.82% (10/78) 1.92 0.000298 0.005265
GO:0031326 regulation of cellular biosynthetic process 12.82% (10/78) 1.92 0.000298 0.005265
GO:0050789 regulation of biological process 15.38% (12/78) 1.57 0.000639 0.005883
GO:0009891 positive regulation of biosynthetic process 3.85% (3/78) 4.17 0.000636 0.006096
GO:0010557 positive regulation of macromolecule biosynthetic process 3.85% (3/78) 4.17 0.000636 0.006096
GO:0031328 positive regulation of cellular biosynthetic process 3.85% (3/78) 4.17 0.000636 0.006096
GO:0045935 positive regulation of nucleobase-containing compound metabolic process 3.85% (3/78) 4.24 0.000557 0.006101
GO:0010556 regulation of macromolecule biosynthetic process 12.82% (10/78) 1.92 0.000294 0.006153
GO:0060255 regulation of macromolecule metabolic process 12.82% (10/78) 1.85 0.000429 0.006167
GO:0031323 regulation of cellular metabolic process 12.82% (10/78) 1.85 0.000429 0.006167
GO:0051254 positive regulation of RNA metabolic process 3.85% (3/78) 4.25 0.000538 0.006191
GO:0045893 positive regulation of DNA-templated transcription 3.85% (3/78) 4.25 0.000538 0.006191
GO:1902680 positive regulation of RNA biosynthetic process 3.85% (3/78) 4.25 0.000538 0.006191
GO:0050794 regulation of cellular process 15.38% (12/78) 1.66 0.00038 0.006239
GO:0019222 regulation of metabolic process 12.82% (10/78) 1.84 0.000473 0.006405
GO:0010468 regulation of gene expression 12.82% (10/78) 1.93 0.000289 0.006656
GO:0080090 regulation of primary metabolic process 12.82% (10/78) 1.93 0.000289 0.006656
GO:0065007 biological regulation 15.38% (12/78) 1.54 0.000792 0.00701
GO:0003700 DNA-binding transcription factor activity 8.97% (7/78) 2.19 0.00087 0.007145
GO:0008168 methyltransferase activity 6.41% (5/78) 3.31 0.000157 0.007223
GO:0031325 positive regulation of cellular metabolic process 3.85% (3/78) 4.02 0.000864 0.00736
GO:0009893 positive regulation of metabolic process 3.85% (3/78) 3.92 0.001051 0.007553
GO:0010604 positive regulation of macromolecule metabolic process 3.85% (3/78) 3.94 0.001023 0.007588
GO:0051173 positive regulation of nitrogen compound metabolic process 3.85% (3/78) 3.94 0.001023 0.007588
GO:0016741 transferase activity, transferring one-carbon groups 6.41% (5/78) 3.23 0.000204 0.007837
GO:0048522 positive regulation of cellular process 3.85% (3/78) 3.95 0.000995 0.007892
GO:0051171 regulation of nitrogen compound metabolic process 12.82% (10/78) 1.93 0.000281 0.008091
GO:0003677 DNA binding 12.82% (10/78) 1.94 0.000262 0.008595
GO:0019219 regulation of nucleobase-containing compound metabolic process 12.82% (10/78) 2.04 0.000156 0.008954
GO:0140110 transcription regulator activity 8.97% (7/78) 2.09 0.00131 0.009129
GO:0051252 regulation of RNA metabolic process 12.82% (10/78) 2.05 0.000146 0.011225
GO:0019354 siroheme biosynthetic process 1.28% (1/78) 9.08 0.001849 0.012149
GO:0046156 siroheme metabolic process 1.28% (1/78) 9.08 0.001849 0.012149
GO:0048518 positive regulation of biological process 3.85% (3/78) 3.51 0.002361 0.015087
GO:0006355 regulation of DNA-templated transcription 12.82% (10/78) 2.06 0.000139 0.01602
GO:2001141 regulation of RNA biosynthetic process 12.82% (10/78) 2.06 0.000139 0.01602
GO:0061929 gamma-glutamylaminecyclotransferase activity 1.28% (1/78) 8.08 0.003694 0.02236
GO:0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity 1.28% (1/78) 8.08 0.003694 0.02236
GO:0003676 nucleic acid binding 15.38% (12/78) 1.24 0.004424 0.026089
GO:0010340 carboxyl-O-methyltransferase activity 1.28% (1/78) 7.49 0.005536 0.029613
GO:0003865 3-oxo-5-alpha-steroid 4-dehydrogenase activity 1.28% (1/78) 7.49 0.005536 0.029613
GO:0033765 steroid dehydrogenase activity, acting on the CH-CH group of donors 1.28% (1/78) 7.49 0.005536 0.029613
GO:0051998 protein carboxyl O-methyltransferase activity 1.28% (1/78) 7.49 0.005536 0.029613
GO:0045944 positive regulation of transcription by RNA polymerase II 2.56% (2/78) 4.1 0.006126 0.032023
GO:0019784 deNEDDylase activity 1.28% (1/78) 7.08 0.007375 0.037695
GO:0006783 heme biosynthetic process 1.28% (1/78) 6.76 0.00921 0.044133
GO:0055072 obsolete iron ion homeostasis 1.28% (1/78) 6.76 0.00921 0.044133
GO:0004351 glutamate decarboxylase activity 1.28% (1/78) 6.76 0.00921 0.044133
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (78) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms