Coexpression cluster: Cluster_47 (Oryza sativa HCCA coexpression clusters - Wang et al (2014))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003735 structural constituent of ribosome 24.22% (31/128) 4.75 0.0 0.0
GO:0005198 structural molecule activity 24.22% (31/128) 4.57 0.0 0.0
GO:0005840 ribosome 22.66% (29/128) 4.83 0.0 0.0
GO:0006412 translation 22.66% (29/128) 4.68 0.0 0.0
GO:0043043 peptide biosynthetic process 22.66% (29/128) 4.65 0.0 0.0
GO:0006518 peptide metabolic process 22.66% (29/128) 4.58 0.0 0.0
GO:0043604 amide biosynthetic process 22.66% (29/128) 4.55 0.0 0.0
GO:0043228 non-membrane-bounded organelle 22.66% (29/128) 4.45 0.0 0.0
GO:0043232 intracellular non-membrane-bounded organelle 22.66% (29/128) 4.45 0.0 0.0
GO:0043603 amide metabolic process 22.66% (29/128) 4.43 0.0 0.0
GO:0009059 macromolecule biosynthetic process 24.22% (31/128) 3.91 0.0 0.0
GO:1901566 organonitrogen compound biosynthetic process 24.22% (31/128) 3.72 0.0 0.0
GO:0044271 cellular nitrogen compound biosynthetic process 24.22% (31/128) 3.6 0.0 0.0
GO:0043226 organelle 25.0% (32/128) 3.47 0.0 0.0
GO:0043229 intracellular organelle 25.0% (32/128) 3.47 0.0 0.0
GO:0044249 cellular biosynthetic process 25.78% (33/128) 3.04 0.0 0.0
GO:0005575 cellular_component 38.28% (49/128) 2.2 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 28.91% (37/128) 2.7 0.0 0.0
GO:1901576 organic substance biosynthetic process 25.78% (33/128) 2.92 0.0 0.0
GO:0009058 biosynthetic process 25.78% (33/128) 2.8 0.0 0.0
GO:0110165 cellular anatomical entity 28.91% (37/128) 2.23 0.0 0.0
GO:0009987 cellular process 43.75% (56/128) 1.38 0.0 0.0
GO:0044237 cellular metabolic process 33.59% (43/128) 1.6 0.0 0.0
GO:0032991 protein-containing complex 15.62% (20/128) 2.49 0.0 0.0
GO:0098798 mitochondrial protein-containing complex 4.69% (6/128) 5.28 0.0 0.0
GO:0006807 nitrogen compound metabolic process 30.47% (39/128) 1.27 0.0 1e-06
GO:0043170 macromolecule metabolic process 28.12% (36/128) 1.31 0.0 2e-06
GO:0019538 protein metabolic process 23.44% (30/128) 1.48 0.0 3e-06
GO:0098800 inner mitochondrial membrane protein complex 3.91% (5/128) 5.26 0.0 3e-06
GO:1901564 organonitrogen compound metabolic process 25.78% (33/128) 1.35 0.0 4e-06
GO:0044391 ribosomal subunit 4.69% (6/128) 4.32 1e-06 7e-06
GO:0008152 metabolic process 34.38% (44/128) 1.01 2e-06 1.9e-05
GO:1990904 ribonucleoprotein complex 5.47% (7/128) 3.59 2e-06 2.3e-05
GO:0071704 organic substance metabolic process 32.03% (41/128) 1.0 6e-06 5.8e-05
GO:1902495 transmembrane transporter complex 2.34% (3/128) 6.25 8e-06 7.6e-05
GO:1990351 transporter complex 2.34% (3/128) 6.25 8e-06 7.6e-05
GO:0008150 biological_process 46.88% (60/128) 0.7 1.2e-05 0.000114
GO:0022625 cytosolic large ribosomal subunit 2.34% (3/128) 6.04 1.2e-05 0.000117
GO:0044238 primary metabolic process 29.69% (38/128) 0.99 1.5e-05 0.000138
GO:0015934 large ribosomal subunit 3.12% (4/128) 4.66 2e-05 0.000175
GO:0098796 membrane protein complex 5.47% (7/128) 3.0 3e-05 0.000262
GO:0098803 respiratory chain complex 2.34% (3/128) 5.14 8.5e-05 0.000721
GO:0005747 mitochondrial respiratory chain complex I 1.56% (2/128) 7.04 9.1e-05 0.000722
GO:0045271 respiratory chain complex I 1.56% (2/128) 7.04 9.1e-05 0.000722
GO:0030964 NADH dehydrogenase complex 1.56% (2/128) 7.04 9.1e-05 0.000722
GO:0022904 respiratory electron transport chain 2.34% (3/128) 4.95 0.000127 0.000987
GO:1990204 oxidoreductase complex 2.34% (3/128) 3.97 0.000948 0.007073
GO:0019646 aerobic electron transport chain 1.56% (2/128) 5.46 0.000934 0.007118
GO:0009060 aerobic respiration 1.56% (2/128) 5.36 0.001066 0.007787
GO:0045333 cellular respiration 1.56% (2/128) 5.28 0.001206 0.008632
GO:0022900 electron transport chain 2.34% (3/128) 3.56 0.002173 0.015251
GO:0008380 RNA splicing 2.34% (3/128) 3.38 0.003081 0.020424
GO:0015980 energy derivation by oxidation of organic compounds 1.56% (2/128) 4.61 0.00305 0.020604
GO:0043461 proton-transporting ATP synthase complex assembly 0.78% (1/128) 8.36 0.003034 0.020888
GO:0051641 cellular localization 3.91% (5/128) 2.33 0.003302 0.021493
GO:0015078 proton transmembrane transporter activity 2.34% (3/128) 3.29 0.003661 0.023401
GO:0008104 protein localization 3.12% (4/128) 2.46 0.006195 0.033102
GO:0033036 macromolecule localization 3.12% (4/128) 2.46 0.006195 0.033102
GO:0070727 cellular macromolecule localization 3.12% (4/128) 2.46 0.006195 0.033102
GO:0007021 tubulin complex assembly 0.78% (1/128) 7.36 0.006059 0.034429
GO:0048487 beta-tubulin binding 0.78% (1/128) 7.36 0.006059 0.034429
GO:0016471 vacuolar proton-transporting V-type ATPase complex 0.78% (1/128) 7.36 0.006059 0.034429
GO:0033176 proton-transporting V-type ATPase complex 0.78% (1/128) 7.36 0.006059 0.034429
GO:0016469 proton-transporting two-sector ATPase complex 0.78% (1/128) 7.36 0.006059 0.034429
GO:0006457 protein folding 2.34% (3/128) 3.02 0.006193 0.034643
GO:0045184 establishment of protein localization 3.12% (4/128) 2.5 0.00567 0.035613
GO:0006414 translational elongation 1.56% (2/128) 4.12 0.005978 0.036898
GO:0032543 mitochondrial translation 0.78% (1/128) 6.78 0.009075 0.04165
GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) 0.78% (1/128) 6.78 0.009075 0.04165
GO:0007023 post-chaperonin tubulin folding pathway 0.78% (1/128) 6.78 0.009075 0.04165
GO:0051205 protein insertion into membrane 0.78% (1/128) 6.78 0.009075 0.04165
GO:0045048 protein insertion into ER membrane 0.78% (1/128) 6.78 0.009075 0.04165
GO:0005853 eukaryotic translation elongation factor 1 complex 0.78% (1/128) 6.78 0.009075 0.04165
GO:0006120 mitochondrial electron transport, NADH to ubiquinone 0.78% (1/128) 6.78 0.009075 0.04165
GO:0004150 dihydroneopterin aldolase activity 0.78% (1/128) 6.78 0.009075 0.04165
GO:0065003 protein-containing complex assembly 2.34% (3/128) 2.79 0.009561 0.043326
GO:0003723 RNA binding 5.47% (7/128) 1.56 0.00999 0.044707
GO:0006754 ATP biosynthetic process 1.56% (2/128) 3.84 0.008663 0.044947
GO:0015986 proton motive force-driven ATP synthesis 1.56% (2/128) 3.84 0.008663 0.044947
GO:0009206 purine ribonucleoside triphosphate biosynthetic process 1.56% (2/128) 3.69 0.010567 0.046135
GO:0009145 purine nucleoside triphosphate biosynthetic process 1.56% (2/128) 3.69 0.010567 0.046135
GO:0015935 small ribosomal subunit 1.56% (2/128) 3.81 0.00903 0.046183
GO:0044183 protein folding chaperone 0.78% (1/128) 6.36 0.012081 0.049713
GO:0070469 respirasome 0.78% (1/128) 6.36 0.012081 0.049713
GO:0010257 NADH dehydrogenase complex assembly 0.78% (1/128) 6.36 0.012081 0.049713
GO:0070071 proton-transporting two-sector ATPase complex assembly 0.78% (1/128) 6.36 0.012081 0.049713
GO:0032981 mitochondrial respiratory chain complex I assembly 0.78% (1/128) 6.36 0.012081 0.049713
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (128) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms