Coexpression cluster: Cluster_159 (Oryza sativa HCCA coexpression clusters - Wang et al (2014))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0043038 amino acid activation 7.02% (4/57) 5.55 2e-06 6.8e-05
GO:0004812 aminoacyl-tRNA ligase activity 7.02% (4/57) 5.55 2e-06 6.8e-05
GO:0043039 tRNA aminoacylation 7.02% (4/57) 5.55 2e-06 6.8e-05
GO:0006418 tRNA aminoacylation for protein translation 7.02% (4/57) 5.55 2e-06 6.8e-05
GO:0016875 ligase activity, forming carbon-oxygen bonds 7.02% (4/57) 5.55 2e-06 6.8e-05
GO:0016874 ligase activity 8.77% (5/57) 4.45 3e-06 0.000116
GO:0034641 cellular nitrogen compound metabolic process 21.05% (12/57) 2.24 6e-06 0.000184
GO:0140101 catalytic activity, acting on a tRNA 7.02% (4/57) 4.92 1e-05 0.000221
GO:0006412 translation 10.53% (6/57) 3.58 1.1e-05 0.000226
GO:1901566 organonitrogen compound biosynthetic process 14.04% (8/57) 2.93 9e-06 0.000238
GO:0043043 peptide biosynthetic process 10.53% (6/57) 3.54 1.3e-05 0.000239
GO:0006518 peptide metabolic process 10.53% (6/57) 3.48 1.7e-05 0.00028
GO:0043604 amide biosynthetic process 10.53% (6/57) 3.45 1.9e-05 0.000289
GO:0006399 tRNA metabolic process 7.02% (4/57) 4.5 3.1e-05 0.000367
GO:0043603 amide metabolic process 10.53% (6/57) 3.33 3e-05 0.000373
GO:0043228 non-membrane-bounded organelle 10.53% (6/57) 3.34 2.8e-05 0.000378
GO:0043232 intracellular non-membrane-bounded organelle 10.53% (6/57) 3.34 2.8e-05 0.000378
GO:0006520 amino acid metabolic process 8.77% (5/57) 3.63 5.4e-05 0.000601
GO:0044249 cellular biosynthetic process 15.79% (9/57) 2.33 6.7e-05 0.000717
GO:0005840 ribosome 8.77% (5/57) 3.46 9.4e-05 0.00095
GO:1901576 organic substance biosynthetic process 15.79% (9/57) 2.21 0.000123 0.001181
GO:0044271 cellular nitrogen compound biosynthetic process 12.28% (7/57) 2.62 0.000137 0.001254
GO:0005737 cytoplasm 7.02% (4/57) 3.91 0.00015 0.001318
GO:0003735 structural constituent of ribosome 8.77% (5/57) 3.28 0.000167 0.001402
GO:0034660 ncRNA metabolic process 7.02% (4/57) 3.85 0.000175 0.001412
GO:0009058 biosynthetic process 15.79% (9/57) 2.1 0.000228 0.001772
GO:0009059 macromolecule biosynthetic process 10.53% (6/57) 2.71 0.000305 0.002199
GO:0005198 structural molecule activity 8.77% (5/57) 3.1 0.000294 0.002201
GO:0110165 cellular anatomical entity 19.3% (11/57) 1.65 0.000627 0.004366
GO:0006082 organic acid metabolic process 8.77% (5/57) 2.83 0.000701 0.004427
GO:0043436 oxoacid metabolic process 8.77% (5/57) 2.83 0.000695 0.00453
GO:0019752 carboxylic acid metabolic process 8.77% (5/57) 2.84 0.000677 0.004562
GO:0004329 formate-tetrahydrofolate ligase activity 1.75% (1/57) 9.53 0.001351 0.006998
GO:0009295 nucleoid 1.75% (1/57) 9.53 0.001351 0.006998
GO:0042644 chloroplast nucleoid 1.75% (1/57) 9.53 0.001351 0.006998
GO:0042646 plastid nucleoid 1.75% (1/57) 9.53 0.001351 0.006998
GO:0019136 deoxynucleoside kinase activity 1.75% (1/57) 9.53 0.001351 0.006998
GO:0004797 thymidine kinase activity 1.75% (1/57) 9.53 0.001351 0.006998
GO:0008837 diaminopimelate epimerase activity 1.75% (1/57) 9.53 0.001351 0.006998
GO:0043229 intracellular organelle 10.53% (6/57) 2.22 0.001762 0.008681
GO:0043226 organelle 10.53% (6/57) 2.22 0.001762 0.008681
GO:0005575 cellular_component 21.05% (12/57) 1.34 0.002269 0.010915
GO:0140098 catalytic activity, acting on RNA 7.02% (4/57) 2.85 0.002333 0.010962
GO:0047661 amino-acid racemase activity 1.75% (1/57) 8.53 0.0027 0.011606
GO:0006427 histidyl-tRNA aminoacylation 1.75% (1/57) 8.53 0.0027 0.011606
GO:0004821 histidine-tRNA ligase activity 1.75% (1/57) 8.53 0.0027 0.011606
GO:0036361 racemase activity, acting on amino acids and derivatives 1.75% (1/57) 8.53 0.0027 0.011606
GO:0044237 cellular metabolic process 24.56% (14/57) 1.15 0.003132 0.01318
GO:0016070 RNA metabolic process 8.77% (5/57) 2.31 0.003365 0.013872
GO:0004826 phenylalanine-tRNA ligase activity 1.75% (1/57) 7.95 0.004048 0.014345
GO:0006432 phenylalanyl-tRNA aminoacylation 1.75% (1/57) 7.95 0.004048 0.014345
GO:0019206 nucleoside kinase activity 1.75% (1/57) 7.95 0.004048 0.014345
GO:0006426 glycyl-tRNA aminoacylation 1.75% (1/57) 7.95 0.004048 0.014345
GO:0004820 glycine-tRNA ligase activity 1.75% (1/57) 7.95 0.004048 0.014345
GO:0006436 tryptophanyl-tRNA aminoacylation 1.75% (1/57) 7.95 0.004048 0.014345
GO:0004830 tryptophan-tRNA ligase activity 1.75% (1/57) 7.95 0.004048 0.014345
GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives 1.75% (1/57) 7.95 0.004048 0.014345
GO:0009987 cellular process 31.58% (18/57) 0.91 0.004547 0.015836
GO:0044281 small molecule metabolic process 8.77% (5/57) 2.14 0.005458 0.018374
GO:0016149 translation release factor activity, codon specific 1.75% (1/57) 7.53 0.005393 0.018466
GO:0003995 acyl-CoA dehydrogenase activity 1.75% (1/57) 6.95 0.00808 0.026324
GO:0052890 oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor 1.75% (1/57) 6.95 0.00808 0.026324
GO:0000373 Group II intron splicing 1.75% (1/57) 6.72 0.00942 0.030203
GO:1901564 organonitrogen compound metabolic process 21.05% (12/57) 1.06 0.010569 0.033357
GO:0047429 nucleoside triphosphate diphosphatase activity 1.75% (1/57) 6.53 0.010758 0.033434
GO:0046451 diaminopimelate metabolic process 1.75% (1/57) 6.36 0.012095 0.034903
GO:0009085 lysine biosynthetic process 1.75% (1/57) 6.36 0.012095 0.034903
GO:0009089 lysine biosynthetic process via diaminopimelate 1.75% (1/57) 6.36 0.012095 0.034903
GO:0006553 lysine metabolic process 1.75% (1/57) 6.36 0.012095 0.034903
GO:0140640 catalytic activity, acting on a nucleic acid 7.02% (4/57) 2.19 0.011579 0.035438
GO:0015995 chlorophyll biosynthetic process 1.75% (1/57) 6.07 0.014763 0.0403
GO:0008079 translation termination factor activity 1.75% (1/57) 6.07 0.014763 0.0403
GO:0006415 translational termination 1.75% (1/57) 6.07 0.014763 0.0403
GO:0003747 translation release factor activity 1.75% (1/57) 6.07 0.014763 0.0403
GO:0005524 ATP binding 14.04% (8/57) 1.29 0.015407 0.041496
GO:0046483 heterocycle metabolic process 10.53% (6/57) 1.56 0.015821 0.041506
GO:0090304 nucleic acid metabolic process 8.77% (5/57) 1.76 0.01578 0.041941
GO:0015994 chlorophyll metabolic process 1.75% (1/57) 5.83 0.017425 0.045125
GO:0006725 cellular aromatic compound metabolic process 10.53% (6/57) 1.52 0.017824 0.045576
GO:1901360 organic cyclic compound metabolic process 10.53% (6/57) 1.49 0.019397 0.048977
GO:0016854 racemase and epimerase activity 1.75% (1/57) 5.62 0.020079 0.049462
GO:0000049 tRNA binding 1.75% (1/57) 5.62 0.020079 0.049462
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (57) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms