Coexpression cluster: Cluster_228 (Oryza sativa HCCA coexpression clusters - Wang et al (2014))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0006139 nucleobase-containing compound metabolic process 17.39% (12/69) 2.41 2e-06 0.000346
GO:0090304 nucleic acid metabolic process 15.94% (11/69) 2.63 2e-06 0.000461
GO:1901360 organic cyclic compound metabolic process 17.39% (12/69) 2.22 9e-06 0.000537
GO:0006725 cellular aromatic compound metabolic process 17.39% (12/69) 2.24 7e-06 0.000553
GO:0046483 heterocycle metabolic process 17.39% (12/69) 2.28 6e-06 0.000562
GO:0003676 nucleic acid binding 21.74% (15/69) 1.74 3e-05 0.001537
GO:0003674 molecular_function 66.67% (46/69) 0.64 5.2e-05 0.001748
GO:0006397 mRNA processing 5.8% (4/69) 4.27 5.8e-05 0.001775
GO:0140513 nuclear protein-containing complex 7.25% (5/69) 3.66 5e-05 0.001893
GO:0006310 DNA recombination 4.35% (3/69) 5.23 7.3e-05 0.002026
GO:0034641 cellular nitrogen compound metabolic process 17.39% (12/69) 1.97 4.9e-05 0.002113
GO:0140640 catalytic activity, acting on a nucleic acid 10.14% (7/69) 2.72 9.4e-05 0.002393
GO:0016071 mRNA metabolic process 5.8% (4/69) 3.99 0.000123 0.002879
GO:0000030 mannosyltransferase activity 2.9% (2/69) 6.8 0.000144 0.00292
GO:0003712 transcription coregulator activity 4.35% (3/69) 4.91 0.000141 0.003067
GO:0005488 binding 47.83% (33/69) 0.81 0.000205 0.003902
GO:0016070 RNA metabolic process 10.14% (7/69) 2.52 0.000221 0.003965
GO:0006396 RNA processing 7.25% (5/69) 3.1 0.0003 0.005088
GO:0003714 transcription corepressor activity 2.9% (2/69) 6.09 0.000397 0.006366
GO:0005634 nucleus 7.25% (5/69) 2.99 0.000434 0.006624
GO:0032991 protein-containing complex 11.59% (8/69) 2.06 0.000646 0.009387
GO:0005681 spliceosomal complex 2.9% (2/69) 5.61 0.000772 0.0107
GO:0061659 ubiquitin-like protein ligase activity 4.35% (3/69) 4.01 0.000884 0.011236
GO:0061630 ubiquitin protein ligase activity 4.35% (3/69) 4.02 0.000862 0.011429
GO:0004377 GDP-Man:Man3GlcNAc2-PP-Dol alpha-1,2-mannosyltransferase activity 1.45% (1/69) 9.26 0.001636 0.017201
GO:0019211 phosphatase activator activity 1.45% (1/69) 9.26 0.001636 0.017201
GO:0071013 catalytic step 2 spliceosome 1.45% (1/69) 9.26 0.001636 0.017201
GO:0006401 RNA catabolic process 2.9% (2/69) 5.01 0.001784 0.017552
GO:0003723 RNA binding 8.7% (6/69) 2.23 0.00176 0.017892
GO:0043227 membrane-bounded organelle 7.25% (5/69) 2.57 0.001559 0.018285
GO:0043231 intracellular membrane-bounded organelle 7.25% (5/69) 2.57 0.001559 0.018285
GO:0009896 positive regulation of catabolic process 1.45% (1/69) 8.26 0.003268 0.022656
GO:0045732 positive regulation of protein catabolic process 1.45% (1/69) 8.26 0.003268 0.022656
GO:0045862 positive regulation of proteolysis 1.45% (1/69) 8.26 0.003268 0.022656
GO:1901800 positive regulation of proteasomal protein catabolic process 1.45% (1/69) 8.26 0.003268 0.022656
GO:1903052 positive regulation of proteolysis involved in protein catabolic process 1.45% (1/69) 8.26 0.003268 0.022656
GO:1904294 positive regulation of ERAD pathway 1.45% (1/69) 8.26 0.003268 0.022656
GO:1905898 positive regulation of response to endoplasmic reticulum stress 1.45% (1/69) 8.26 0.003268 0.022656
GO:1905897 regulation of response to endoplasmic reticulum stress 1.45% (1/69) 8.26 0.003268 0.022656
GO:1904292 regulation of ERAD pathway 1.45% (1/69) 8.26 0.003268 0.022656
GO:0004386 helicase activity 4.35% (3/69) 3.45 0.00268 0.02477
GO:0006259 DNA metabolic process 5.8% (4/69) 2.8 0.002634 0.025103
GO:1990904 ribonucleoprotein complex 4.35% (3/69) 3.26 0.003899 0.026429
GO:0003724 RNA helicase activity 2.9% (2/69) 4.58 0.003192 0.027812
GO:0008186 ATP-dependent activity, acting on RNA 2.9% (2/69) 4.58 0.003192 0.027812
GO:0005575 cellular_component 18.84% (13/69) 1.18 0.004248 0.028166
GO:0051177 meiotic sister chromatid cohesion 1.45% (1/69) 7.67 0.004899 0.02819
GO:0003910 DNA ligase (ATP) activity 1.45% (1/69) 7.67 0.004899 0.02819
GO:0003909 DNA ligase activity 1.45% (1/69) 7.67 0.004899 0.02819
GO:0004534 5'-3' RNA exonuclease activity 1.45% (1/69) 7.67 0.004899 0.02819
GO:0003691 double-stranded telomeric DNA binding 1.45% (1/69) 7.67 0.004899 0.02819
GO:0000026 alpha-1,2-mannosyltransferase activity 1.45% (1/69) 7.67 0.004899 0.02819
GO:0140098 catalytic activity, acting on RNA 5.8% (4/69) 2.57 0.004662 0.030251
GO:0004518 nuclease activity 4.35% (3/69) 3.05 0.005762 0.032544
GO:0000398 mRNA splicing, via spliceosome 2.9% (2/69) 4.13 0.005925 0.032859
GO:0004842 ubiquitin-protein transferase activity 4.35% (3/69) 2.98 0.006664 0.035042
GO:0006281 DNA repair 4.35% (3/69) 2.98 0.006586 0.035239
GO:0016886 ligase activity, forming phosphoric ester bonds 1.45% (1/69) 7.26 0.006526 0.035544
GO:0019787 ubiquitin-like protein transferase activity 4.35% (3/69) 2.93 0.007227 0.036133
GO:0006974 DNA damage response 4.35% (3/69) 2.93 0.007227 0.036133
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 2.9% (2/69) 3.99 0.007127 0.036841
GO:1903050 regulation of proteolysis involved in protein catabolic process 1.45% (1/69) 6.93 0.008151 0.037106
GO:0061136 regulation of proteasomal protein catabolic process 1.45% (1/69) 6.93 0.008151 0.037106
GO:0030162 regulation of proteolysis 1.45% (1/69) 6.93 0.008151 0.037106
GO:0016755 aminoacyltransferase activity 4.35% (3/69) 2.91 0.007561 0.037193
GO:0005515 protein binding 20.29% (14/69) 1.02 0.007892 0.037608
GO:0034661 ncRNA catabolic process 1.45% (1/69) 6.67 0.009774 0.037733
GO:0016075 rRNA catabolic process 1.45% (1/69) 6.67 0.009774 0.037733
GO:0006814 sodium ion transport 1.45% (1/69) 6.67 0.009774 0.037733
GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity 1.45% (1/69) 6.67 0.009774 0.037733
GO:0004376 glycolipid mannosyltransferase activity 1.45% (1/69) 6.67 0.009774 0.037733
GO:0042162 telomeric DNA binding 1.45% (1/69) 6.67 0.009774 0.037733
GO:0051321 meiotic cell cycle 1.45% (1/69) 6.67 0.009774 0.037733
GO:0008409 5'-3' exonuclease activity 1.45% (1/69) 6.67 0.009774 0.037733
GO:0016788 hydrolase activity, acting on ester bonds 7.25% (5/69) 1.99 0.008553 0.037805
GO:0009057 macromolecule catabolic process 4.35% (3/69) 2.85 0.008435 0.037832
GO:0000375 RNA splicing, via transesterification reactions 2.9% (2/69) 3.92 0.007858 0.038045
GO:0097159 organic cyclic compound binding 27.54% (19/69) 0.81 0.008767 0.0382
GO:0033554 cellular response to stress 4.35% (3/69) 2.76 0.010053 0.038325
GO:0043170 macromolecule metabolic process 21.74% (15/69) 0.94 0.009303 0.039965
GO:0008380 RNA splicing 2.9% (2/69) 3.69 0.010672 0.040183
GO:0006807 nitrogen compound metabolic process 23.19% (16/69) 0.88 0.010852 0.040364
GO:0051716 cellular response to stimulus 4.35% (3/69) 2.71 0.011083 0.040726
GO:0080135 regulation of cellular response to stress 1.45% (1/69) 6.45 0.011393 0.041368
GO:0140657 ATP-dependent activity 5.8% (4/69) 2.18 0.011848 0.042513
GO:0007131 reciprocal meiotic recombination 1.45% (1/69) 6.26 0.01301 0.045093
GO:0140527 reciprocal homologous recombination 1.45% (1/69) 6.26 0.01301 0.045093
GO:0035825 homologous recombination 1.45% (1/69) 6.26 0.01301 0.045093
GO:0034655 nucleobase-containing compound catabolic process 2.9% (2/69) 3.51 0.013385 0.04587
GO:0048584 positive regulation of response to stimulus 1.45% (1/69) 6.09 0.014625 0.048485
GO:0007049 cell cycle 1.45% (1/69) 6.09 0.014625 0.048485
GO:0003950 NAD+ ADP-ribosyltransferase activity 1.45% (1/69) 6.09 0.014625 0.048485
GO:0046700 heterocycle catabolic process 2.9% (2/69) 3.41 0.015342 0.048744
GO:0044270 cellular nitrogen compound catabolic process 2.9% (2/69) 3.41 0.015342 0.048744
GO:0009056 catabolic process 5.8% (4/69) 2.08 0.015043 0.049335
GO:0140110 transcription regulator activity 7.25% (5/69) 1.78 0.015306 0.049664
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (69) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms