Coexpression cluster: Cluster_207 (Oryza sativa HCCA coexpression clusters - Wang et al (2014))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003674 molecular_function 69.39% (102/147) 0.7 0.0 0.0
GO:0005488 binding 50.34% (74/147) 0.89 0.0 1e-06
GO:0006596 polyamine biosynthetic process 2.72% (4/147) 6.08 0.0 5.1e-05
GO:0006595 polyamine metabolic process 2.72% (4/147) 5.92 1e-06 6.2e-05
GO:0097159 organic cyclic compound binding 31.97% (47/147) 1.02 1e-06 6.9e-05
GO:0042401 biogenic amine biosynthetic process 2.72% (4/147) 5.46 2e-06 0.000118
GO:0009309 amine biosynthetic process 2.72% (4/147) 5.46 2e-06 0.000118
GO:0043167 ion binding 27.21% (40/147) 1.11 2e-06 0.00012
GO:0008295 spermidine biosynthetic process 2.04% (3/147) 6.16 9e-06 0.000421
GO:0008216 spermidine metabolic process 2.04% (3/147) 6.16 9e-06 0.000421
GO:0006576 biogenic amine metabolic process 2.72% (4/147) 4.81 1.3e-05 0.000557
GO:0043168 anion binding 19.05% (28/147) 1.23 1.9e-05 0.000764
GO:1901363 heterocyclic compound binding 19.05% (28/147) 1.19 3.1e-05 0.001054
GO:0016830 carbon-carbon lyase activity 3.4% (5/147) 3.83 2.9e-05 0.001056
GO:0036094 small molecule binding 19.05% (28/147) 1.18 3.5e-05 0.001116
GO:0008150 biological_process 44.22% (65/147) 0.61 5.3e-05 0.001578
GO:0009987 cellular process 29.93% (44/147) 0.83 5.9e-05 0.001637
GO:0009308 amine metabolic process 2.72% (4/147) 4.19 7.2e-05 0.001887
GO:0000166 nucleotide binding 17.69% (26/147) 1.14 0.000112 0.002647
GO:1901265 nucleoside phosphate binding 17.69% (26/147) 1.14 0.000112 0.002647
GO:0016831 carboxy-lyase activity 2.72% (4/147) 3.96 0.000135 0.003034
GO:0006812 monoatomic cation transport 4.08% (6/147) 2.82 0.000225 0.004847
GO:0006597 spermine biosynthetic process 1.36% (2/147) 5.99 0.000427 0.007771
GO:0008215 spermine metabolic process 1.36% (2/147) 5.99 0.000427 0.007771
GO:0004014 adenosylmethionine decarboxylase activity 1.36% (2/147) 5.99 0.000427 0.007771
GO:0008324 monoatomic cation transmembrane transporter activity 4.08% (6/147) 2.65 0.000418 0.008596
GO:0006811 monoatomic ion transport 4.08% (6/147) 2.6 0.000514 0.009008
GO:0051252 regulation of RNA metabolic process 8.84% (13/147) 1.51 0.000689 0.00987
GO:0016829 lyase activity 4.08% (6/147) 2.53 0.000661 0.01008
GO:0044237 cellular metabolic process 20.41% (30/147) 0.88 0.000689 0.010177
GO:0140828 metal cation:monoatomic cation antiporter activity 1.36% (2/147) 5.58 0.000778 0.01022
GO:0051139 metal cation:proton antiporter activity 1.36% (2/147) 5.58 0.000778 0.01022
GO:0006355 regulation of DNA-templated transcription 8.84% (13/147) 1.52 0.000651 0.01026
GO:2001141 regulation of RNA biosynthetic process 8.84% (13/147) 1.52 0.000651 0.01026
GO:0019219 regulation of nucleobase-containing compound metabolic process 8.84% (13/147) 1.5 0.000738 0.010273
GO:0042026 protein refolding 1.36% (2/147) 5.71 0.00065 0.010975
GO:0032555 purine ribonucleotide binding 14.97% (22/147) 1.03 0.001089 0.013916
GO:0032553 ribonucleotide binding 14.97% (22/147) 1.02 0.001237 0.015008
GO:0015075 monoatomic ion transmembrane transporter activity 4.08% (6/147) 2.35 0.001223 0.015226
GO:0009889 regulation of biosynthetic process 8.84% (13/147) 1.39 0.001529 0.015724
GO:0031326 regulation of cellular biosynthetic process 8.84% (13/147) 1.39 0.001529 0.015724
GO:0097367 carbohydrate derivative binding 14.97% (22/147) 1.0 0.00137 0.016201
GO:0010556 regulation of macromolecule biosynthetic process 8.84% (13/147) 1.39 0.00151 0.016237
GO:0010468 regulation of gene expression 8.84% (13/147) 1.39 0.001483 0.016308
GO:0080090 regulation of primary metabolic process 8.84% (13/147) 1.39 0.001483 0.016308
GO:0030001 metal ion transport 2.72% (4/147) 3.01 0.001624 0.016344
GO:0051171 regulation of nitrogen compound metabolic process 8.84% (13/147) 1.4 0.001437 0.016579
GO:0050660 flavin adenine dinucleotide binding 2.72% (4/147) 2.98 0.001752 0.017265
GO:0017076 purine nucleotide binding 14.97% (22/147) 0.97 0.001909 0.018428
GO:0009408 response to heat 1.36% (2/147) 4.84 0.002199 0.020799
GO:0031323 regulation of cellular metabolic process 8.84% (13/147) 1.32 0.002295 0.020878
GO:0060255 regulation of macromolecule metabolic process 8.84% (13/147) 1.32 0.002295 0.020878
GO:0019222 regulation of metabolic process 8.84% (13/147) 1.3 0.002558 0.022409
GO:0032559 adenyl ribonucleotide binding 13.61% (20/147) 0.99 0.002528 0.022558
GO:0055085 transmembrane transport 6.12% (9/147) 1.61 0.003042 0.02616
GO:0008270 zinc ion binding 5.44% (8/147) 1.72 0.003167 0.026747
GO:0008987 quinolinate synthetase A activity 0.68% (1/147) 8.16 0.003484 0.027018
GO:0009445 putrescine metabolic process 0.68% (1/147) 8.16 0.003484 0.027018
GO:0009446 putrescine biosynthetic process 0.68% (1/147) 8.16 0.003484 0.027018
GO:0047632 agmatine deiminase activity 0.68% (1/147) 8.16 0.003484 0.027018
GO:0004668 protein-arginine deiminase activity 0.68% (1/147) 8.16 0.003484 0.027018
GO:0009628 response to abiotic stimulus 2.04% (3/147) 3.23 0.004149 0.031656
GO:0030554 adenyl nucleotide binding 13.61% (20/147) 0.93 0.004217 0.031661
GO:0015299 obsolete solute:proton antiporter activity 1.36% (2/147) 4.36 0.004295 0.031742
GO:0006796 phosphate-containing compound metabolic process 10.2% (15/147) 1.1 0.004637 0.032736
GO:0009266 response to temperature stimulus 1.36% (2/147) 4.31 0.004603 0.032985
GO:0006793 phosphorus metabolic process 10.2% (15/147) 1.09 0.004764 0.033136
GO:0035639 purine ribonucleoside triphosphate binding 12.24% (18/147) 0.98 0.004559 0.033177
GO:0065007 biological regulation 10.88% (16/147) 1.04 0.005023 0.034436
GO:0046914 transition metal ion binding 7.48% (11/147) 1.3 0.005455 0.036858
GO:0003824 catalytic activity 31.29% (46/147) 0.51 0.005672 0.037786
GO:0034641 cellular nitrogen compound metabolic process 9.52% (14/147) 1.1 0.006084 0.03997
GO:0009064 glutamine family amino acid metabolic process 1.36% (2/147) 4.04 0.006654 0.04253
GO:0055080 monoatomic cation homeostasis 1.36% (2/147) 4.04 0.006654 0.04253
GO:0006882 intracellular zinc ion homeostasis 0.68% (1/147) 7.16 0.006957 0.043873
GO:0003676 nucleic acid binding 12.24% (18/147) 0.91 0.007265 0.045216
GO:0140640 catalytic activity, acting on a nucleic acid 4.76% (7/147) 1.63 0.007981 0.049027
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (147) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms