Coexpression cluster: Cluster_9 (Oryza sativa HCCA coexpression clusters - Wang et al (2014))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003674 molecular_function 64.15% (102/159) 0.59 0.0 1.9e-05
GO:0008150 biological_process 45.91% (73/159) 0.67 4e-06 0.000871
GO:0035639 purine ribonucleoside triphosphate binding 15.09% (24/159) 1.28 4.9e-05 0.002266
GO:0031507 heterochromatin formation 1.89% (3/159) 5.24 6.6e-05 0.002341
GO:0045814 negative regulation of gene expression, epigenetic 1.89% (3/159) 5.24 6.6e-05 0.002341
GO:0070828 heterochromatin organization 1.89% (3/159) 5.24 6.6e-05 0.002341
GO:0032559 adenyl ribonucleotide binding 15.72% (25/159) 1.2 8.3e-05 0.00238
GO:0006338 chromatin remodeling 2.52% (4/159) 4.14 8e-05 0.002454
GO:0032553 ribonucleotide binding 16.98% (27/159) 1.2 4.3e-05 0.002458
GO:0097367 carbohydrate derivative binding 16.98% (27/159) 1.19 4.9e-05 0.002504
GO:0017076 purine nucleotide binding 16.98% (27/159) 1.15 7.7e-05 0.002514
GO:0003824 catalytic activity 35.22% (56/159) 0.68 9.4e-05 0.002538
GO:0031047 regulatory ncRNA-mediated gene silencing 1.89% (3/159) 5.05 0.0001 0.002552
GO:0031048 regulatory ncRNA-mediated heterochromatin formation 1.89% (3/159) 5.47 4.1e-05 0.00269
GO:0140718 facultative heterochromatin formation 1.89% (3/159) 5.47 4.1e-05 0.00269
GO:0006346 DNA methylation-dependent heterochromatin formation 1.89% (3/159) 5.47 4.1e-05 0.00269
GO:0080188 gene silencing by RNA-directed DNA methylation 1.89% (3/159) 5.47 4.1e-05 0.00269
GO:0005524 ATP binding 13.84% (22/159) 1.27 0.000113 0.002734
GO:0006325 chromatin organization 2.52% (4/159) 3.96 0.000131 0.002859
GO:0043167 ion binding 23.27% (37/159) 0.88 0.000147 0.002933
GO:0000166 nucleotide binding 16.98% (27/159) 1.08 0.000169 0.002977
GO:1901265 nucleoside phosphate binding 16.98% (27/159) 1.08 0.000169 0.002977
GO:0040029 epigenetic regulation of gene expression 1.89% (3/159) 4.88 0.000144 0.002993
GO:0005488 binding 40.88% (65/159) 0.59 0.000131 0.002997
GO:0030554 adenyl nucleotide binding 15.72% (25/159) 1.13 0.000169 0.003224
GO:0007031 peroxisome organization 1.26% (2/159) 6.47 0.00021 0.003311
GO:0009987 cellular process 28.3% (45/159) 0.75 0.000207 0.003383
GO:0043168 anion binding 16.98% (27/159) 1.06 0.000206 0.003498
GO:0016043 cellular component organization 6.29% (10/159) 1.99 0.000237 0.003611
GO:0071824 protein-DNA complex organization 2.52% (4/159) 3.71 0.000258 0.00381
GO:1901363 heterocyclic compound binding 16.98% (27/159) 1.02 0.000314 0.0045
GO:0036094 small molecule binding 16.98% (27/159) 1.01 0.000351 0.004878
GO:0015923 mannosidase activity 1.26% (2/159) 6.05 0.000389 0.005245
GO:0032555 purine ribonucleotide binding 16.98% (27/159) 1.21 3.6e-05 0.005522
GO:0140658 ATP-dependent chromatin remodeler activity 1.89% (3/159) 4.28 0.000504 0.006596
GO:0071840 cellular component organization or biogenesis 6.29% (10/159) 1.84 0.000538 0.00685
GO:0031011 Ino80 complex 1.26% (2/159) 5.59 0.000759 0.00915
GO:0097346 INO80-type complex 1.26% (2/159) 5.59 0.000759 0.00915
GO:0016740 transferase activity 16.98% (27/159) 0.94 0.000794 0.009321
GO:0061630 ubiquitin protein ligase activity 2.52% (4/159) 3.23 0.000909 0.010409
GO:0061659 ubiquitin-like protein ligase activity 2.52% (4/159) 3.22 0.000939 0.010494
GO:0000159 protein phosphatase type 2A complex 1.26% (2/159) 5.35 0.001071 0.011411
GO:0140657 ATP-dependent activity 5.03% (8/159) 1.98 0.001062 0.011584
GO:0008287 protein serine/threonine phosphatase complex 1.26% (2/159) 5.24 0.001247 0.012689
GO:1903293 phosphatase complex 1.26% (2/159) 5.24 0.001247 0.012689
GO:0051234 establishment of localization 8.81% (14/159) 1.35 0.001278 0.012727
GO:0070603 SWI/SNF superfamily-type complex 1.26% (2/159) 5.14 0.001435 0.013692
GO:0051179 localization 8.81% (14/159) 1.33 0.001434 0.013973
GO:0051641 cellular localization 3.77% (6/159) 2.28 0.001567 0.014649
GO:1904949 ATPase complex 1.26% (2/159) 4.96 0.00185 0.016942
GO:0004842 ubiquitin-protein transferase activity 3.14% (5/159) 2.51 0.001964 0.017297
GO:0045184 establishment of protein localization 3.14% (5/159) 2.51 0.001964 0.017297
GO:0070727 cellular macromolecule localization 3.14% (5/159) 2.47 0.002193 0.01826
GO:0033036 macromolecule localization 3.14% (5/159) 2.47 0.002193 0.01826
GO:0008104 protein localization 3.14% (5/159) 2.47 0.002193 0.01826
GO:0019787 ubiquitin-like protein transferase activity 3.14% (5/159) 2.47 0.002233 0.018261
GO:0016755 aminoacyltransferase activity 3.14% (5/159) 2.44 0.002398 0.019267
GO:0016758 hexosyltransferase activity 3.14% (5/159) 2.42 0.002572 0.020308
GO:0004156 dihydropteroate synthase activity 0.63% (1/159) 8.05 0.003769 0.023973
GO:0003825 alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity 0.63% (1/159) 8.05 0.003769 0.023973
GO:0008495 protoheme IX farnesyltransferase activity 0.63% (1/159) 8.05 0.003769 0.023973
GO:0004567 beta-mannosidase activity 0.63% (1/159) 8.05 0.003769 0.023973
GO:0003848 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity 0.63% (1/159) 8.05 0.003769 0.023973
GO:1901000 regulation of response to salt stress 0.63% (1/159) 8.05 0.003769 0.023973
GO:0047484 regulation of response to osmotic stress 0.63% (1/159) 8.05 0.003769 0.023973
GO:0033947 mannosylglycoprotein endo-beta-mannosidase activity 0.63% (1/159) 8.05 0.003769 0.023973
GO:0005053 peroxisome matrix targeting signal-2 binding 0.63% (1/159) 8.05 0.003769 0.023973
GO:1901001 negative regulation of response to salt stress 0.63% (1/159) 8.05 0.003769 0.023973
GO:0000268 peroxisome targeting sequence binding 0.63% (1/159) 8.05 0.003769 0.023973
GO:0006810 transport 8.18% (13/159) 1.26 0.003207 0.024896
GO:0019888 protein phosphatase regulator activity 1.26% (2/159) 4.53 0.00339 0.025877
GO:0019208 phosphatase regulator activity 1.26% (2/159) 4.47 0.003689 0.027698
GO:0097159 organic cyclic compound binding 23.9% (38/159) 0.6 0.004759 0.029859
GO:0140096 catalytic activity, acting on a protein 13.21% (21/159) 0.88 0.004915 0.03042
GO:0010629 negative regulation of gene expression 1.89% (3/159) 3.11 0.005161 0.031519
GO:0006996 organelle organization 3.14% (5/159) 2.15 0.005587 0.033671
GO:0048519 negative regulation of biological process 2.52% (4/159) 2.48 0.005942 0.035345
GO:0065002 intracellular protein transmembrane transport 0.63% (1/159) 7.05 0.007523 0.040066
GO:0016558 protein import into peroxisome matrix 0.63% (1/159) 7.05 0.007523 0.040066
GO:0010224 response to UV-B 0.63% (1/159) 7.05 0.007523 0.040066
GO:0072663 establishment of protein localization to peroxisome 0.63% (1/159) 7.05 0.007523 0.040066
GO:0003991 acetylglutamate kinase activity 0.63% (1/159) 7.05 0.007523 0.040066
GO:0072662 protein localization to peroxisome 0.63% (1/159) 7.05 0.007523 0.040066
GO:0004134 4-alpha-glucanotransferase activity 0.63% (1/159) 7.05 0.007523 0.040066
GO:1902494 catalytic complex 3.14% (5/159) 2.04 0.00778 0.040956
GO:0017111 ribonucleoside triphosphate phosphatase activity 3.77% (6/159) 1.84 0.007031 0.041285
GO:0016787 hydrolase activity 12.58% (20/159) 0.86 0.007284 0.042231
GO:0015031 protein transport 2.52% (4/159) 2.3 0.0091 0.047362
GO:0016462 pyrophosphatase activity 3.77% (6/159) 1.74 0.009515 0.048964
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (159) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms