Coexpression cluster: Cluster_229 (Oryza sativa HCCA coexpression clusters - Wang et al (2014))

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0006396 RNA processing 15.62% (10/64) 4.21 0.0 0.0
GO:0016070 RNA metabolic process 20.31% (13/64) 3.52 0.0 0.0
GO:0003723 RNA binding 18.75% (12/64) 3.34 0.0 0.0
GO:0090304 nucleic acid metabolic process 20.31% (13/64) 2.97 0.0 0.0
GO:1901360 organic cyclic compound metabolic process 23.44% (15/64) 2.65 0.0 1e-06
GO:0006139 nucleobase-containing compound metabolic process 21.88% (14/64) 2.74 0.0 1e-06
GO:1990904 ribonucleoprotein complex 10.94% (7/64) 4.59 0.0 1e-06
GO:0006725 cellular aromatic compound metabolic process 23.44% (15/64) 2.68 0.0 1e-06
GO:0034641 cellular nitrogen compound metabolic process 25.0% (16/64) 2.49 0.0 1e-06
GO:0046483 heterocycle metabolic process 21.88% (14/64) 2.61 0.0 1e-06
GO:0003676 nucleic acid binding 26.56% (17/64) 2.03 0.0 1.2e-05
GO:0003674 molecular_function 73.44% (47/64) 0.78 1e-06 1.5e-05
GO:0005488 binding 56.25% (36/64) 1.05 1e-06 2.1e-05
GO:0006807 nitrogen compound metabolic process 35.94% (23/64) 1.51 2e-06 3.3e-05
GO:0034470 ncRNA processing 7.81% (5/64) 4.6 2e-06 4.1e-05
GO:0006364 rRNA processing 6.25% (4/64) 5.34 3e-06 5.5e-05
GO:0043170 macromolecule metabolic process 32.81% (21/64) 1.54 4e-06 7e-05
GO:0016072 rRNA metabolic process 6.25% (4/64) 5.21 4e-06 7e-05
GO:0044238 primary metabolic process 37.5% (24/64) 1.33 8e-06 0.000117
GO:0034660 ncRNA metabolic process 7.81% (5/64) 4.01 1.6e-05 0.000227
GO:0008152 metabolic process 39.06% (25/64) 1.19 2.5e-05 0.00034
GO:0097159 organic cyclic compound binding 35.94% (23/64) 1.19 6.4e-05 0.000842
GO:0032991 protein-containing complex 14.06% (9/64) 2.34 6.7e-05 0.000845
GO:0071704 organic substance metabolic process 35.94% (23/64) 1.16 8.5e-05 0.001036
GO:0016071 mRNA metabolic process 6.25% (4/64) 4.1 9.1e-05 0.001065
GO:0044237 cellular metabolic process 28.12% (18/64) 1.34 0.000143 0.001605
GO:0042254 ribosome biogenesis 3.12% (2/64) 6.04 0.000423 0.004558
GO:0030684 preribosome 3.12% (2/64) 5.97 0.000467 0.004853
GO:0009987 cellular process 34.38% (22/64) 1.03 0.000508 0.005093
GO:0008150 biological_process 48.44% (31/64) 0.75 0.000731 0.006866
GO:0022613 ribonucleoprotein complex biogenesis 3.12% (2/64) 5.66 0.000719 0.006976
GO:0008173 RNA methyltransferase activity 3.12% (2/64) 5.51 0.000896 0.008146
GO:0006397 mRNA processing 4.69% (3/64) 3.96 0.000971 0.008559
GO:0016823 hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances 1.56% (1/64) 9.36 0.001517 0.012262
GO:0016822 hydrolase activity, acting on acid carbon-carbon bonds 1.56% (1/64) 9.36 0.001517 0.012262
GO:0004334 fumarylacetoacetase activity 1.56% (1/64) 9.36 0.001517 0.012262
GO:0006493 protein O-linked glycosylation 1.56% (1/64) 8.36 0.003032 0.023216
GO:0030688 preribosome, small subunit precursor 1.56% (1/64) 8.36 0.003032 0.023216
GO:0003743 translation initiation factor activity 3.12% (2/64) 4.58 0.003194 0.023833
GO:0004449 isocitrate dehydrogenase (NAD+) activity 1.56% (1/64) 7.78 0.004544 0.033059
GO:0000398 mRNA splicing, via spliceosome 3.12% (2/64) 4.24 0.005119 0.036334
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 3.12% (2/64) 4.1 0.00616 0.040742
GO:0005575 cellular_component 18.75% (12/64) 1.17 0.00613 0.041485
GO:0044085 cellular component biogenesis 3.12% (2/64) 4.12 0.006006 0.041614
GO:0000375 RNA splicing, via transesterification reactions 3.12% (2/64) 4.02 0.006795 0.043941
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 1.56% (1/64) 7.04 0.007562 0.04784
GO:0008135 translation factor activity, RNA binding 3.12% (2/64) 3.89 0.008149 0.049404
GO:0090079 translation regulator activity, nucleic acid binding 3.12% (2/64) 3.89 0.008149 0.049404
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (64) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms