Coexpression cluster: Cluster_223 (Oryza sativa HCCA coexpression clusters - Wang et al (2014))

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0090304 nucleic acid metabolic process 14.89% (7/47) 2.53 0.000192 0.018179
GO:0008380 RNA splicing 6.38% (3/47) 4.83 0.000167 0.031545
GO:0034641 cellular nitrogen compound metabolic process 14.89% (7/47) 1.74 0.004506 0.042585
GO:0032259 methylation 4.26% (2/47) 4.29 0.00477 0.042933
GO:0006260 DNA replication 4.26% (2/47) 4.52 0.003456 0.043549
GO:0000375 RNA splicing, via transesterification reactions 4.26% (2/47) 4.47 0.003721 0.043956
GO:0000077 DNA damage checkpoint signaling 2.13% (1/47) 7.81 0.004449 0.044254
GO:0070071 proton-transporting two-sector ATPase complex assembly 2.13% (1/47) 7.81 0.004449 0.044254
GO:0042770 signal transduction in response to DNA damage 2.13% (1/47) 7.81 0.004449 0.044254
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 4.26% (2/47) 4.54 0.00337 0.045495
GO:0000808 origin recognition complex 2.13% (1/47) 7.49 0.005558 0.045673
GO:0051260 protein homooligomerization 2.13% (1/47) 7.49 0.005558 0.045673
GO:1901360 organic cyclic compound metabolic process 14.89% (7/47) 1.99 0.001715 0.046295
GO:0006725 cellular aromatic compound metabolic process 14.89% (7/47) 2.02 0.001537 0.048409
GO:0031570 DNA integrity checkpoint signaling 2.13% (1/47) 7.23 0.006666 0.048457
GO:0031683 G-protein beta/gamma-subunit complex binding 2.13% (1/47) 7.23 0.006666 0.048457
GO:0051259 protein complex oligomerization 2.13% (1/47) 7.23 0.006666 0.048457
GO:0070070 proton-transporting V-type ATPase complex assembly 2.13% (1/47) 8.23 0.003338 0.048536
GO:0005689 U12-type spliceosomal complex 2.13% (1/47) 8.23 0.003338 0.048536
GO:0070072 vacuolar proton-transporting V-type ATPase complex assembly 2.13% (1/47) 8.23 0.003338 0.048536
GO:0006259 DNA metabolic process 6.38% (3/47) 2.94 0.007008 0.049057
GO:0006396 RNA processing 6.38% (3/47) 2.92 0.007342 0.049556
GO:0022607 cellular component assembly 6.38% (3/47) 3.8 0.001318 0.049816
GO:0006139 nucleobase-containing compound metabolic process 14.89% (7/47) 2.19 0.000794 0.049994
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (47) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms