Coexpression cluster: Cluster_448 (Oryza sativa HCCA coexpression clusters - Wang et al (2014))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0000381 regulation of alternative mRNA splicing, via spliceosome 50.0% (1/2) 13.36 9.5e-05 0.00146
GO:0048024 regulation of mRNA splicing, via spliceosome 50.0% (1/2) 13.36 9.5e-05 0.00146
GO:0043484 regulation of RNA splicing 50.0% (1/2) 13.36 9.5e-05 0.00146
GO:0032535 regulation of cellular component size 50.0% (1/2) 10.91 0.000521 0.001825
GO:0090066 regulation of anatomical structure size 50.0% (1/2) 10.91 0.000521 0.001825
GO:0016556 mRNA modification 50.0% (1/2) 14.36 4.7e-05 0.001825
GO:0080009 mRNA methylation 50.0% (1/2) 14.36 4.7e-05 0.001825
GO:0043226 organelle 100.0% (2/2) 5.47 0.000508 0.001954
GO:0043229 intracellular organelle 100.0% (2/2) 5.47 0.000508 0.001954
GO:0032271 regulation of protein polymerization 50.0% (1/2) 11.04 0.000474 0.002028
GO:1902903 regulation of supramolecular fiber organization 50.0% (1/2) 11.04 0.000474 0.002028
GO:0043254 regulation of protein-containing complex assembly 50.0% (1/2) 11.04 0.000474 0.002028
GO:0032956 regulation of actin cytoskeleton organization 50.0% (1/2) 11.19 0.000427 0.00219
GO:0008064 regulation of actin polymerization or depolymerization 50.0% (1/2) 11.19 0.000427 0.00219
GO:0030833 regulation of actin filament polymerization 50.0% (1/2) 11.19 0.000427 0.00219
GO:0030832 regulation of actin filament length 50.0% (1/2) 11.19 0.000427 0.00219
GO:0032970 regulation of actin filament-based process 50.0% (1/2) 11.19 0.000427 0.00219
GO:0110053 regulation of actin filament organization 50.0% (1/2) 11.19 0.000427 0.00219
GO:0015629 actin cytoskeleton 50.0% (1/2) 10.56 0.000664 0.002222
GO:0050684 regulation of mRNA processing 50.0% (1/2) 12.04 0.000237 0.002607
GO:1903311 regulation of mRNA metabolic process 50.0% (1/2) 12.04 0.000237 0.002607
GO:0005885 Arp2/3 protein complex 50.0% (1/2) 11.78 0.000284 0.002738
GO:0034314 Arp2/3 complex-mediated actin nucleation 50.0% (1/2) 11.56 0.000332 0.002839
GO:0005856 cytoskeleton 50.0% (1/2) 10.04 0.000948 0.003041
GO:0045010 actin nucleation 50.0% (1/2) 9.84 0.00109 0.003357
GO:0001510 RNA methylation 50.0% (1/2) 9.36 0.001516 0.004491
GO:0044087 regulation of cellular component biogenesis 50.0% (1/2) 8.91 0.002085 0.005946
GO:0051493 regulation of cytoskeleton organization 50.0% (1/2) 8.78 0.002274 0.006254
GO:0050794 regulation of cellular process 100.0% (2/2) 4.36 0.002374 0.006303
GO:0007015 actin filament organization 50.0% (1/2) 8.66 0.002464 0.006323
GO:0065008 regulation of biological quality 50.0% (1/2) 8.61 0.002558 0.006354
GO:0097435 supramolecular fiber organization 50.0% (1/2) 8.43 0.00289 0.006357
GO:0033043 regulation of organelle organization 50.0% (1/2) 8.43 0.00289 0.006357
GO:0050789 regulation of biological process 100.0% (2/2) 4.27 0.002669 0.006422
GO:0065007 biological regulation 100.0% (2/2) 4.24 0.002803 0.00654
GO:0043414 macromolecule methylation 50.0% (1/2) 8.19 0.00341 0.007294
GO:0110165 cellular anatomical entity 100.0% (2/2) 4.02 0.003791 0.007889
GO:0032259 methylation 50.0% (1/2) 7.84 0.004357 0.008602
GO:0051128 regulation of cellular component organization 50.0% (1/2) 7.87 0.004262 0.008636
GO:0005575 cellular_component 100.0% (2/2) 3.58 0.006955 0.013389
GO:0009451 RNA modification 50.0% (1/2) 7.07 0.007429 0.01362
GO:0016071 mRNA metabolic process 50.0% (1/2) 7.1 0.007287 0.013686
GO:0005634 nucleus 50.0% (1/2) 5.77 0.018215 0.032618
GO:0043232 intracellular non-membrane-bounded organelle 50.0% (1/2) 5.59 0.020656 0.035345
GO:0043228 non-membrane-bounded organelle 50.0% (1/2) 5.59 0.020656 0.035345
GO:0043227 membrane-bounded organelle 50.0% (1/2) 5.36 0.024218 0.039677
GO:0043231 intracellular membrane-bounded organelle 50.0% (1/2) 5.36 0.024218 0.039677
GO:0009987 cellular process 100.0% (2/2) 2.57 0.028326 0.04544
GO:0016043 cellular component organization 50.0% (1/2) 4.98 0.03137 0.049296
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (2) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms