Coexpression cluster: Cluster_165 (Oryza sativa HCCA coexpression clusters - Wang et al (2014))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:1901360 organic cyclic compound metabolic process 17.69% (26/147) 2.24 0.0 0.0
GO:0006725 cellular aromatic compound metabolic process 17.69% (26/147) 2.27 0.0 0.0
GO:0046483 heterocycle metabolic process 17.01% (25/147) 2.25 0.0 0.0
GO:0090304 nucleic acid metabolic process 14.29% (21/147) 2.47 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 18.37% (27/147) 2.05 0.0 0.0
GO:0006139 nucleobase-containing compound metabolic process 15.65% (23/147) 2.26 0.0 0.0
GO:0016070 RNA metabolic process 11.56% (17/147) 2.71 0.0 0.0
GO:0003723 RNA binding 10.88% (16/147) 2.56 0.0 1e-06
GO:0006396 RNA processing 6.8% (10/147) 3.01 1e-06 3.1e-05
GO:0044237 cellular metabolic process 25.17% (37/147) 1.18 1e-06 6.5e-05
GO:0009987 cellular process 32.65% (48/147) 0.96 2e-06 9.4e-05
GO:0140513 nuclear protein-containing complex 5.44% (8/147) 3.25 2e-06 0.0001
GO:0005488 binding 44.22% (65/147) 0.7 7e-06 0.000273
GO:0003676 nucleic acid binding 17.01% (25/147) 1.39 9e-06 0.00034
GO:0006807 nitrogen compound metabolic process 24.49% (36/147) 0.96 6.1e-05 0.002067
GO:0006364 rRNA processing 2.72% (4/147) 4.14 8.1e-05 0.002593
GO:0034660 ncRNA metabolic process 4.08% (6/147) 3.07 8.8e-05 0.002631
GO:0034470 ncRNA processing 3.4% (5/147) 3.4 0.00012 0.003218
GO:0016072 rRNA metabolic process 2.72% (4/147) 4.02 0.000115 0.003255
GO:0000439 transcription factor TFIIH core complex 1.36% (2/147) 6.58 0.000179 0.004361
GO:0008152 metabolic process 29.25% (43/147) 0.78 0.000176 0.004499
GO:0043170 macromolecule metabolic process 21.77% (32/147) 0.94 0.000201 0.004676
GO:0016311 dephosphorylation 2.72% (4/147) 3.55 0.000396 0.008439
GO:0071704 organic substance metabolic process 27.21% (40/147) 0.76 0.000395 0.008781
GO:0090575 RNA polymerase II transcription regulator complex 2.04% (3/147) 4.29 0.000494 0.010103
GO:0003674 molecular_function 56.46% (83/147) 0.4 0.000547 0.010757
GO:0008150 biological_process 41.5% (61/147) 0.52 0.000707 0.013384
GO:0018130 heterocycle biosynthetic process 4.76% (7/147) 2.18 0.00097 0.017086
GO:0019438 aromatic compound biosynthetic process 4.76% (7/147) 2.18 0.000957 0.017466
GO:0006397 mRNA processing 2.72% (4/147) 3.18 0.001049 0.017867
GO:0005667 transcription regulator complex 2.04% (3/147) 3.8 0.001348 0.022226
GO:0044238 primary metabolic process 24.49% (36/147) 0.72 0.001508 0.023355
GO:0006259 DNA metabolic process 4.08% (6/147) 2.3 0.001482 0.023669
GO:0006470 protein dephosphorylation 2.04% (3/147) 3.71 0.001615 0.024272
GO:1901362 organic cyclic compound biosynthetic process 4.76% (7/147) 2.04 0.001666 0.02432
GO:0006289 nucleotide-excision repair 1.36% (2/147) 4.92 0.001983 0.02739
GO:0032040 small-subunit processome 1.36% (2/147) 4.92 0.001983 0.02739
GO:0016791 phosphatase activity 3.4% (5/147) 2.48 0.002171 0.027737
GO:0016071 mRNA metabolic process 2.72% (4/147) 2.9 0.002128 0.027876
GO:0097159 organic cyclic compound binding 25.17% (37/147) 0.68 0.002085 0.028041
GO:0030684 preribosome 1.36% (2/147) 4.77 0.002424 0.030217
GO:0032991 protein-containing complex 7.48% (11/147) 1.43 0.002782 0.033842
GO:0044271 cellular nitrogen compound biosynthetic process 6.12% (9/147) 1.62 0.00288 0.034231
GO:0004721 phosphoprotein phosphatase activity 2.04% (3/147) 3.39 0.003001 0.034855
GO:0001735 prenylcysteine oxidase activity 0.68% (1/147) 8.16 0.003484 0.034911
GO:0004638 phosphoribosylaminoimidazole carboxylase activity 0.68% (1/147) 8.16 0.003484 0.034911
GO:0000811 GINS complex 0.68% (1/147) 8.16 0.003484 0.034911
GO:0010027 thylakoid membrane organization 0.68% (1/147) 8.16 0.003484 0.034911
GO:0009668 plastid membrane organization 0.68% (1/147) 8.16 0.003484 0.034911
GO:0031261 DNA replication preinitiation complex 0.68% (1/147) 8.16 0.003484 0.034911
GO:0061666 UFM1 ligase activity 0.68% (1/147) 8.16 0.003484 0.034911
GO:0042578 phosphoric ester hydrolase activity 3.4% (5/147) 2.27 0.004018 0.039489
GO:1990904 ribonucleoprotein complex 2.72% (4/147) 2.58 0.004681 0.045131
GO:0022618 protein-RNA complex assembly 1.36% (2/147) 4.26 0.00492 0.045713
GO:0032774 RNA biosynthetic process 2.72% (4/147) 2.56 0.004855 0.04594
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (147) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms