Coexpression cluster: Cluster_14 (Oryza sativa HCCA coexpression clusters - Wang et al (2014))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0008017 microtubule binding 7.21% (15/208) 4.56 0.0 0.0
GO:0006260 DNA replication 6.25% (13/208) 5.08 0.0 0.0
GO:0015631 tubulin binding 7.21% (15/208) 4.43 0.0 0.0
GO:0007018 microtubule-based movement 5.29% (11/208) 5.51 0.0 0.0
GO:0006270 DNA replication initiation 3.37% (7/208) 7.15 0.0 0.0
GO:0003777 microtubule motor activity 5.29% (11/208) 4.82 0.0 0.0
GO:0008092 cytoskeletal protein binding 7.21% (15/208) 3.8 0.0 0.0
GO:0000786 nucleosome 4.81% (10/208) 5.06 0.0 0.0
GO:0032993 protein-DNA complex 4.81% (10/208) 5.03 0.0 0.0
GO:0007017 microtubule-based process 5.77% (12/208) 4.38 0.0 0.0
GO:0003774 cytoskeletal motor activity 5.29% (11/208) 4.58 0.0 0.0
GO:0006259 DNA metabolic process 8.17% (17/208) 3.3 0.0 0.0
GO:0042555 MCM complex 2.4% (5/208) 7.4 0.0 0.0
GO:0046982 protein heterodimerization activity 4.81% (10/208) 4.4 0.0 0.0
GO:0003677 DNA binding 13.94% (29/208) 2.07 0.0 0.0
GO:0032392 DNA geometric change 2.4% (5/208) 6.82 0.0 0.0
GO:0032508 DNA duplex unwinding 2.4% (5/208) 6.82 0.0 0.0
GO:0005515 protein binding 25.0% (52/208) 1.32 0.0 0.0
GO:0071103 DNA conformation change 2.88% (6/208) 5.93 0.0 0.0
GO:0022402 cell cycle process 4.33% (9/208) 4.36 0.0 0.0
GO:1903047 mitotic cell cycle process 2.88% (6/208) 5.66 0.0 0.0
GO:0051276 chromosome organization 4.33% (9/208) 3.95 0.0 0.0
GO:0033043 regulation of organelle organization 3.37% (7/208) 4.54 0.0 1e-06
GO:0005524 ATP binding 16.35% (34/208) 1.51 0.0 1e-06
GO:0009987 cellular process 32.21% (67/208) 0.94 0.0 1e-06
GO:0035639 purine ribonucleoside triphosphate binding 16.83% (35/208) 1.44 0.0 1e-06
GO:0140657 ATP-dependent activity 7.21% (15/208) 2.5 0.0 2e-06
GO:0097159 organic cyclic compound binding 30.29% (63/208) 0.94 0.0 2e-06
GO:0032991 protein-containing complex 10.58% (22/208) 1.93 0.0 2e-06
GO:0090304 nucleic acid metabolic process 10.1% (21/208) 1.97 0.0 2e-06
GO:0005488 binding 43.75% (91/208) 0.68 0.0 4e-06
GO:0006996 organelle organization 5.29% (11/208) 2.9 0.0 5e-06
GO:0051128 regulation of cellular component organization 3.37% (7/208) 3.98 0.0 5e-06
GO:0006139 nucleobase-containing compound metabolic process 11.06% (23/208) 1.76 0.0 6e-06
GO:0032559 adenyl ribonucleotide binding 16.83% (35/208) 1.3 1e-06 1.1e-05
GO:0032555 purine ribonucleotide binding 17.31% (36/208) 1.24 1e-06 1.9e-05
GO:0005575 cellular_component 18.75% (39/208) 1.17 1e-06 2e-05
GO:1901265 nucleoside phosphate binding 18.27% (38/208) 1.18 2e-06 2.1e-05
GO:0000166 nucleotide binding 18.27% (38/208) 1.18 2e-06 2.1e-05
GO:0032553 ribonucleotide binding 17.31% (36/208) 1.22 2e-06 2.1e-05
GO:0046483 heterocycle metabolic process 11.06% (23/208) 1.63 2e-06 2.3e-05
GO:0097367 carbohydrate derivative binding 17.31% (36/208) 1.21 2e-06 2.4e-05
GO:0030554 adenyl nucleotide binding 16.83% (35/208) 1.23 2e-06 2.5e-05
GO:0006725 cellular aromatic compound metabolic process 11.06% (23/208) 1.59 3e-06 3.4e-05
GO:0008150 biological_process 43.75% (91/208) 0.6 3e-06 4e-05
GO:0017076 purine nucleotide binding 17.31% (36/208) 1.18 3e-06 4e-05
GO:1901360 organic cyclic compound metabolic process 11.06% (23/208) 1.56 4e-06 4.2e-05
GO:1901363 heterocyclic compound binding 18.27% (38/208) 1.13 4e-06 4.3e-05
GO:2001251 negative regulation of chromosome organization 1.44% (3/208) 6.44 4e-06 4.4e-05
GO:0036094 small molecule binding 18.27% (38/208) 1.12 5e-06 4.7e-05
GO:0051726 regulation of cell cycle 2.88% (6/208) 3.77 6e-06 5.7e-05
GO:0003674 molecular_function 57.69% (120/208) 0.43 1e-05 9.5e-05
GO:0051129 negative regulation of cellular component organization 1.44% (3/208) 6.08 1e-05 9.6e-05
GO:0010639 negative regulation of organelle organization 1.44% (3/208) 6.08 1e-05 9.6e-05
GO:0043168 anion binding 17.31% (36/208) 1.09 1.3e-05 0.000126
GO:0003676 nucleic acid binding 14.9% (31/208) 1.2 1.4e-05 0.000131
GO:0010564 regulation of cell cycle process 2.4% (5/208) 4.01 1.5e-05 0.000143
GO:0046983 protein dimerization activity 5.29% (11/208) 2.3 1.7e-05 0.000157
GO:0033044 regulation of chromosome organization 1.44% (3/208) 5.79 1.9e-05 0.000169
GO:0005634 nucleus 4.81% (10/208) 2.39 2.5e-05 0.000217
GO:0016043 cellular component organization 6.25% (13/208) 1.98 3.1e-05 0.000266
GO:0031401 positive regulation of protein modification process 1.44% (3/208) 5.55 3.3e-05 0.000276
GO:0051347 positive regulation of transferase activity 1.44% (3/208) 5.44 4.1e-05 0.000339
GO:0070507 regulation of microtubule cytoskeleton organization 1.92% (4/208) 4.38 4.1e-05 0.000344
GO:0032886 regulation of microtubule-based process 1.92% (4/208) 4.31 5e-05 0.000408
GO:0034641 cellular nitrogen compound metabolic process 11.06% (23/208) 1.31 5.9e-05 0.000473
GO:0140097 catalytic activity, acting on DNA 3.37% (7/208) 2.82 6.8e-05 0.00053
GO:0003887 DNA-directed DNA polymerase activity 1.44% (3/208) 5.16 7.6e-05 0.00059
GO:0071840 cellular component organization or biogenesis 6.25% (13/208) 1.83 8.9e-05 0.00068
GO:0034061 DNA polymerase activity 1.44% (3/208) 5.08 9.1e-05 0.000686
GO:0051493 regulation of cytoskeleton organization 1.92% (4/208) 4.08 9.4e-05 0.000698
GO:0009791 post-embryonic development 1.44% (3/208) 5.0 0.000108 0.000789
GO:0051247 positive regulation of protein metabolic process 1.44% (3/208) 4.93 0.000127 0.000912
GO:0007076 mitotic chromosome condensation 0.96% (2/208) 6.66 0.000144 0.001025
GO:0030261 chromosome condensation 0.96% (2/208) 6.34 0.00024 0.00168
GO:0043227 membrane-bounded organelle 4.81% (10/208) 1.98 0.000259 0.001726
GO:0043231 intracellular membrane-bounded organelle 4.81% (10/208) 1.98 0.000259 0.001726
GO:0043085 positive regulation of catalytic activity 1.44% (3/208) 4.61 0.000251 0.001736
GO:0050790 regulation of catalytic activity 1.92% (4/208) 3.71 0.000256 0.001749
GO:0032147 activation of protein kinase activity 0.96% (2/208) 6.08 0.000358 0.001962
GO:2000816 negative regulation of mitotic sister chromatid separation 0.96% (2/208) 6.08 0.000358 0.001962
GO:1905819 negative regulation of chromosome separation 0.96% (2/208) 6.08 0.000358 0.001962
GO:1902100 negative regulation of metaphase/anaphase transition of cell cycle 0.96% (2/208) 6.08 0.000358 0.001962
GO:0007094 mitotic spindle assembly checkpoint signaling 0.96% (2/208) 6.08 0.000358 0.001962
GO:0071174 mitotic spindle checkpoint signaling 0.96% (2/208) 6.08 0.000358 0.001962
GO:0071173 spindle assembly checkpoint signaling 0.96% (2/208) 6.08 0.000358 0.001962
GO:0033048 negative regulation of mitotic sister chromatid segregation 0.96% (2/208) 6.08 0.000358 0.001962
GO:0031577 spindle checkpoint signaling 0.96% (2/208) 6.08 0.000358 0.001962
GO:0033046 negative regulation of sister chromatid segregation 0.96% (2/208) 6.08 0.000358 0.001962
GO:0009263 deoxyribonucleotide biosynthetic process 0.96% (2/208) 6.08 0.000358 0.001962
GO:0045839 negative regulation of mitotic nuclear division 0.96% (2/208) 6.08 0.000358 0.001962
GO:0045841 negative regulation of mitotic metaphase/anaphase transition 0.96% (2/208) 6.08 0.000358 0.001962
GO:0051784 negative regulation of nuclear division 0.96% (2/208) 6.08 0.000358 0.001962
GO:0051985 negative regulation of chromosome segregation 0.96% (2/208) 6.08 0.000358 0.001962
GO:0005819 spindle 0.96% (2/208) 6.08 0.000358 0.001962
GO:0032502 developmental process 2.88% (6/208) 2.69 0.000369 0.002003
GO:0065009 regulation of molecular function 1.92% (4/208) 3.6 0.000345 0.002269
GO:0044093 positive regulation of molecular function 1.44% (3/208) 4.34 0.000435 0.002333
GO:0009262 deoxyribonucleotide metabolic process 0.96% (2/208) 5.86 0.0005 0.002552
GO:1905818 regulation of chromosome separation 0.96% (2/208) 5.86 0.0005 0.002552
GO:0033047 regulation of mitotic sister chromatid segregation 0.96% (2/208) 5.86 0.0005 0.002552
GO:0010965 regulation of mitotic sister chromatid separation 0.96% (2/208) 5.86 0.0005 0.002552
GO:0007088 regulation of mitotic nuclear division 0.96% (2/208) 5.86 0.0005 0.002552
GO:0099080 supramolecular complex 1.44% (3/208) 4.2 0.000578 0.002895
GO:0016779 nucleotidyltransferase activity 2.4% (5/208) 2.91 0.000573 0.002897
GO:0001934 positive regulation of protein phosphorylation 0.96% (2/208) 5.66 0.000664 0.003235
GO:1901991 negative regulation of mitotic cell cycle phase transition 0.96% (2/208) 5.66 0.000664 0.003235
GO:0045860 positive regulation of protein kinase activity 0.96% (2/208) 5.66 0.000664 0.003235
GO:0051338 regulation of transferase activity 1.44% (3/208) 4.08 0.000748 0.00361
GO:0007093 mitotic cell cycle checkpoint signaling 0.96% (2/208) 5.49 0.000851 0.003794
GO:0051783 regulation of nuclear division 0.96% (2/208) 5.49 0.000851 0.003794
GO:0010562 positive regulation of phosphorus metabolic process 0.96% (2/208) 5.49 0.000851 0.003794
GO:0042327 positive regulation of phosphorylation 0.96% (2/208) 5.49 0.000851 0.003794
GO:0045937 positive regulation of phosphate metabolic process 0.96% (2/208) 5.49 0.000851 0.003794
GO:0045930 negative regulation of mitotic cell cycle 0.96% (2/208) 5.49 0.000851 0.003794
GO:0033674 positive regulation of kinase activity 0.96% (2/208) 5.49 0.000851 0.003794
GO:0090224 regulation of spindle organization 1.44% (3/208) 4.04 0.000811 0.003843
GO:0060236 regulation of mitotic spindle organization 1.44% (3/208) 4.04 0.000811 0.003843
GO:0043229 intracellular organelle 6.25% (13/208) 1.47 0.000954 0.00418
GO:0043226 organelle 6.25% (13/208) 1.47 0.000954 0.00418
GO:1902099 regulation of metaphase/anaphase transition of cell cycle 0.96% (2/208) 5.34 0.001061 0.004535
GO:0033045 regulation of sister chromatid segregation 0.96% (2/208) 5.34 0.001061 0.004535
GO:0030071 regulation of mitotic metaphase/anaphase transition 0.96% (2/208) 5.34 0.001061 0.004535
GO:0051983 regulation of chromosome segregation 0.96% (2/208) 5.2 0.001292 0.005481
GO:0043167 ion binding 20.19% (42/208) 0.68 0.001313 0.005526
GO:0044237 cellular metabolic process 18.27% (38/208) 0.72 0.001371 0.005725
GO:0090558 plant epidermis development 0.96% (2/208) 5.08 0.001545 0.006205
GO:0042575 DNA polymerase complex 0.96% (2/208) 5.08 0.001545 0.006205
GO:0051301 cell division 0.96% (2/208) 5.08 0.001545 0.006205
GO:0010374 stomatal complex development 0.96% (2/208) 5.08 0.001545 0.006205
GO:0031399 regulation of protein modification process 1.44% (3/208) 3.73 0.001534 0.006352
GO:0000075 cell cycle checkpoint signaling 0.96% (2/208) 4.96 0.001821 0.007093
GO:1901988 negative regulation of cell cycle phase transition 0.96% (2/208) 4.96 0.001821 0.007093
GO:0010948 negative regulation of cell cycle process 0.96% (2/208) 4.96 0.001821 0.007093
GO:1901990 regulation of mitotic cell cycle phase transition 0.96% (2/208) 4.96 0.001821 0.007093
GO:0043170 macromolecule metabolic process 18.27% (38/208) 0.69 0.001995 0.007716
GO:0044238 primary metabolic process 22.6% (47/208) 0.6 0.002012 0.007724
GO:0007346 regulation of mitotic cell cycle 0.96% (2/208) 4.86 0.002117 0.008069
GO:0071704 organic substance metabolic process 23.56% (49/208) 0.55 0.003054 0.011558
GO:1901987 regulation of cell cycle phase transition 0.96% (2/208) 4.49 0.003514 0.013201
GO:0045786 negative regulation of cell cycle 0.96% (2/208) 4.42 0.003914 0.014602
GO:1902292 cell cycle DNA replication initiation 0.48% (1/208) 7.66 0.00493 0.016518
GO:0003688 DNA replication origin binding 0.48% (1/208) 7.66 0.00493 0.016518
GO:1905463 negative regulation of DNA duplex unwinding 0.48% (1/208) 7.66 0.00493 0.016518
GO:0140719 constitutive heterochromatin formation 0.48% (1/208) 7.66 0.00493 0.016518
GO:0051095 regulation of helicase activity 0.48% (1/208) 7.66 0.00493 0.016518
GO:0051097 negative regulation of helicase activity 0.48% (1/208) 7.66 0.00493 0.016518
GO:1905462 regulation of DNA duplex unwinding 0.48% (1/208) 7.66 0.00493 0.016518
GO:0043462 regulation of ATP-dependent activity 0.48% (1/208) 7.66 0.00493 0.016518
GO:0032780 negative regulation of ATP-dependent activity 0.48% (1/208) 7.66 0.00493 0.016518
GO:1905775 negative regulation of DNA helicase activity 0.48% (1/208) 7.66 0.00493 0.016518
GO:2000694 regulation of phragmoplast microtubule organization 0.48% (1/208) 7.66 0.00493 0.016518
GO:0031509 subtelomeric heterochromatin formation 0.48% (1/208) 7.66 0.00493 0.016518
GO:0030337 DNA polymerase processivity factor activity 0.48% (1/208) 7.66 0.00493 0.016518
GO:1902975 mitotic DNA replication initiation 0.48% (1/208) 7.66 0.00493 0.016518
GO:1902315 nuclear cell cycle DNA replication initiation 0.48% (1/208) 7.66 0.00493 0.016518
GO:1905774 regulation of DNA helicase activity 0.48% (1/208) 7.66 0.00493 0.016518
GO:0006281 DNA repair 2.4% (5/208) 2.13 0.006043 0.020119
GO:0008094 ATP-dependent activity, acting on DNA 1.92% (4/208) 2.46 0.006194 0.020489
GO:0003678 DNA helicase activity 1.44% (3/208) 2.96 0.00685 0.022518
GO:0006974 DNA damage response 2.4% (5/208) 2.08 0.006949 0.022703
GO:0032501 multicellular organismal process 1.44% (3/208) 2.91 0.0076 0.024676
GO:0034654 nucleobase-containing compound biosynthetic process 2.88% (6/208) 1.81 0.007869 0.025392
GO:0001932 regulation of protein phosphorylation 0.96% (2/208) 3.86 0.008404 0.026792
GO:0045859 regulation of protein kinase activity 0.96% (2/208) 3.86 0.008404 0.026792
GO:0099513 polymeric cytoskeletal fiber 0.96% (2/208) 3.81 0.008998 0.027677
GO:0005874 microtubule 0.96% (2/208) 3.81 0.008998 0.027677
GO:0043549 regulation of kinase activity 0.96% (2/208) 3.81 0.008998 0.027677
GO:0099081 supramolecular polymer 0.96% (2/208) 3.81 0.008998 0.027677
GO:0042325 regulation of phosphorylation 0.96% (2/208) 3.81 0.008998 0.027677
GO:0099512 supramolecular fiber 0.96% (2/208) 3.81 0.008998 0.027677
GO:0061731 ribonucleoside-diphosphate reductase activity 0.48% (1/208) 6.66 0.009836 0.028428
GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor 0.48% (1/208) 6.66 0.009836 0.028428
GO:0044770 cell cycle phase transition 0.48% (1/208) 6.66 0.009836 0.028428
GO:0000082 G1/S transition of mitotic cell cycle 0.48% (1/208) 6.66 0.009836 0.028428
GO:0044843 cell cycle G1/S phase transition 0.48% (1/208) 6.66 0.009836 0.028428
GO:0006269 DNA replication, synthesis of RNA primer 0.48% (1/208) 6.66 0.009836 0.028428
GO:0044772 mitotic cell cycle phase transition 0.48% (1/208) 6.66 0.009836 0.028428
GO:0003896 DNA primase activity 0.48% (1/208) 6.66 0.009836 0.028428
GO:0000796 condensin complex 0.48% (1/208) 6.66 0.009836 0.028428
GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor 0.48% (1/208) 6.66 0.009836 0.028428
GO:0005664 nuclear origin of replication recognition complex 0.48% (1/208) 6.66 0.009836 0.028428
GO:0008152 metabolic process 23.56% (49/208) 0.46 0.01024 0.029432
GO:0033554 cellular response to stress 2.4% (5/208) 1.9 0.011355 0.032459
GO:0006807 nitrogen compound metabolic process 18.27% (38/208) 0.53 0.012049 0.034259
GO:0048523 negative regulation of cellular process 1.92% (4/208) 2.16 0.012616 0.035679
GO:0061695 transferase complex, transferring phosphorus-containing groups 0.96% (2/208) 3.53 0.012934 0.036381
GO:0051716 cellular response to stimulus 2.4% (5/208) 1.85 0.013107 0.036672
GO:0051246 regulation of protein metabolic process 1.44% (3/208) 2.58 0.014188 0.039485
GO:0008622 epsilon DNA polymerase complex 0.48% (1/208) 6.08 0.014718 0.040113
GO:0000278 mitotic cell cycle 0.48% (1/208) 6.08 0.014718 0.040113
GO:0090627 plant epidermal cell differentiation 0.48% (1/208) 6.08 0.014718 0.040113
GO:0010052 guard cell differentiation 0.48% (1/208) 6.08 0.014718 0.040113
GO:0048519 negative regulation of biological process 1.92% (4/208) 2.09 0.014832 0.040215
GO:0051173 positive regulation of nitrogen compound metabolic process 1.44% (3/208) 2.52 0.015715 0.042175
GO:0010604 positive regulation of macromolecule metabolic process 1.44% (3/208) 2.52 0.015715 0.042175
GO:0140640 catalytic activity, acting on a nucleic acid 3.85% (8/208) 1.32 0.015891 0.042217
GO:0032774 RNA biosynthetic process 1.92% (4/208) 2.06 0.015891 0.04243
GO:0009893 positive regulation of metabolic process 1.44% (3/208) 2.51 0.016111 0.042585
GO:0009888 tissue development 0.96% (2/208) 3.31 0.017484 0.045528
GO:0019220 regulation of phosphate metabolic process 0.96% (2/208) 3.31 0.017484 0.045528
GO:0051174 regulation of phosphorus metabolic process 0.96% (2/208) 3.31 0.017484 0.045528
GO:0110165 cellular anatomical entity 10.1% (21/208) 0.71 0.018078 0.046843
GO:0008047 enzyme activator activity 0.96% (2/208) 3.27 0.0183 0.047184
GO:0000776 kinetochore 0.48% (1/208) 5.66 0.019576 0.049268
GO:0043138 3'-5' DNA helicase activity 0.48% (1/208) 5.66 0.019576 0.049268
GO:0048608 reproductive structure development 0.48% (1/208) 5.66 0.019576 0.049268
GO:0009908 flower development 0.48% (1/208) 5.66 0.019576 0.049268
GO:0090567 reproductive shoot system development 0.48% (1/208) 5.66 0.019576 0.049268
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (208) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms