Coexpression cluster: Cluster_67 (Oryza sativa HCCA coexpression clusters - Wang et al (2014))

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003674 molecular_function 65.61% (124/189) 0.62 0.0 0.0
GO:0005488 binding 48.15% (91/189) 0.82 0.0 0.0
GO:0019899 enzyme binding 3.17% (6/189) 4.24 1e-06 0.000159
GO:0005515 protein binding 21.69% (41/189) 1.11 2e-06 0.000239
GO:0008150 biological_process 43.39% (82/189) 0.59 1.5e-05 0.001669
GO:0050794 regulation of cellular process 12.7% (24/189) 1.38 1.8e-05 0.001721
GO:0065007 biological regulation 13.23% (25/189) 1.32 2.4e-05 0.001964
GO:0016887 ATP hydrolysis activity 4.23% (8/189) 2.71 3.4e-05 0.002436
GO:0051336 regulation of hydrolase activity 1.59% (3/189) 5.39 4.7e-05 0.002701
GO:0050789 regulation of biological process 12.7% (24/189) 1.3 4.6e-05 0.002915
GO:0003723 RNA binding 6.88% (13/189) 1.89 5.7e-05 0.002949
GO:0003824 catalytic activity 34.39% (65/189) 0.64 6.3e-05 0.002969
GO:0052742 phosphatidylinositol kinase activity 1.59% (3/189) 5.22 6.9e-05 0.003008
GO:0032991 protein-containing complex 8.47% (16/189) 1.61 8.4e-05 0.003202
GO:0043167 ion binding 22.75% (43/189) 0.85 7.9e-05 0.003203
GO:0035639 purine ribonucleoside triphosphate binding 13.76% (26/189) 1.15 0.000121 0.00361
GO:0019903 protein phosphatase binding 1.06% (2/189) 6.8 0.000119 0.003764
GO:0019902 phosphatase binding 1.06% (2/189) 6.8 0.000119 0.003764
GO:0097159 organic cyclic compound binding 26.46% (50/189) 0.75 0.000109 0.003861
GO:0031323 regulation of cellular metabolic process 9.52% (18/189) 1.43 0.000149 0.004025
GO:0060255 regulation of macromolecule metabolic process 9.52% (18/189) 1.43 0.000149 0.004025
GO:0019222 regulation of metabolic process 9.52% (18/189) 1.41 0.000173 0.004289
GO:0003712 transcription coregulator activity 2.12% (4/189) 3.87 0.000167 0.004313
GO:0008278 cohesin complex 1.06% (2/189) 6.48 0.000198 0.00433
GO:0048015 phosphatidylinositol-mediated signaling 1.06% (2/189) 6.48 0.000198 0.00433
GO:0005524 ATP binding 12.7% (24/189) 1.15 0.000219 0.004446
GO:0001727 lipid kinase activity 1.59% (3/189) 4.69 0.000213 0.004494
GO:0017111 ribonucleoside triphosphate phosphatase activity 4.76% (9/189) 2.17 0.000196 0.004651
GO:0032555 purine ribonucleotide binding 14.81% (28/189) 1.01 0.000296 0.005806
GO:0016462 pyrophosphatase activity 4.76% (9/189) 2.08 0.000316 0.006002
GO:0032553 ribonucleotide binding 14.81% (28/189) 1.0 0.000347 0.006375
GO:0097367 carbohydrate derivative binding 14.81% (28/189) 0.99 0.000394 0.006412
GO:0016817 hydrolase activity, acting on acid anhydrides 4.76% (9/189) 2.05 0.000374 0.006441
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 4.76% (9/189) 2.05 0.000363 0.006447
GO:0046488 phosphatidylinositol metabolic process 2.12% (4/189) 3.55 0.000389 0.006512
GO:0032784 regulation of DNA-templated transcription elongation 1.06% (2/189) 5.8 0.000549 0.008012
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay 1.06% (2/189) 5.8 0.000549 0.008012
GO:0004721 phosphoprotein phosphatase activity 2.12% (4/189) 3.44 0.00052 0.008211
GO:0032559 adenyl ribonucleotide binding 13.76% (26/189) 1.01 0.000536 0.008242
GO:0017076 purine nucleotide binding 14.81% (28/189) 0.95 0.000597 0.00849
GO:0009889 regulation of biosynthetic process 8.47% (16/189) 1.32 0.00075 0.00908
GO:0031326 regulation of cellular biosynthetic process 8.47% (16/189) 1.32 0.00075 0.00908
GO:0140657 ATP-dependent activity 4.76% (9/189) 1.9 0.000781 0.009258
GO:0010556 regulation of macromolecule biosynthetic process 8.47% (16/189) 1.32 0.000739 0.009345
GO:0080090 regulation of primary metabolic process 8.47% (16/189) 1.33 0.000723 0.009347
GO:0010468 regulation of gene expression 8.47% (16/189) 1.33 0.000723 0.009347
GO:0016071 mRNA metabolic process 2.65% (5/189) 2.86 0.000675 0.009363
GO:0043666 regulation of phosphoprotein phosphatase activity 1.06% (2/189) 5.48 0.000877 0.009419
GO:0046854 phosphatidylinositol phosphate biosynthetic process 1.06% (2/189) 5.48 0.000877 0.009419
GO:0035304 regulation of protein dephosphorylation 1.06% (2/189) 5.48 0.000877 0.009419
GO:0051171 regulation of nitrogen compound metabolic process 8.47% (16/189) 1.33 0.000696 0.009435
GO:0140658 ATP-dependent chromatin remodeler activity 1.59% (3/189) 4.03 0.000832 0.00947
GO:0140513 nuclear protein-containing complex 3.17% (6/189) 2.47 0.000817 0.009489
GO:0006405 RNA export from nucleus 1.06% (2/189) 5.34 0.001069 0.010489
GO:0010921 regulation of phosphatase activity 1.06% (2/189) 5.34 0.001069 0.010489
GO:0140096 catalytic activity, acting on a protein 13.76% (26/189) 0.94 0.001056 0.010725
GO:0009057 macromolecule catabolic process 3.17% (6/189) 2.4 0.001049 0.010848
GO:0030554 adenyl nucleotide binding 13.76% (26/189) 0.94 0.001041 0.010965
GO:0035303 regulation of dephosphorylation 1.06% (2/189) 5.22 0.001279 0.011198
GO:0051236 establishment of RNA localization 1.06% (2/189) 5.22 0.001279 0.011198
GO:0050658 RNA transport 1.06% (2/189) 5.22 0.001279 0.011198
GO:0050657 nucleic acid transport 1.06% (2/189) 5.22 0.001279 0.011198
GO:0003676 nucleic acid binding 12.7% (24/189) 0.96 0.001328 0.011452
GO:1901265 nucleoside phosphate binding 14.81% (28/189) 0.88 0.001235 0.011717
GO:0000166 nucleotide binding 14.81% (28/189) 0.88 0.001235 0.011717
GO:0008270 zinc ion binding 5.29% (10/189) 1.68 0.001261 0.011761
GO:0006650 glycerophospholipid metabolic process 2.12% (4/189) 3.05 0.001454 0.012351
GO:0043168 anion binding 14.81% (28/189) 0.86 0.001483 0.01241
GO:0046486 glycerolipid metabolic process 2.12% (4/189) 2.97 0.001774 0.014016
GO:0016579 protein deubiquitination 1.59% (3/189) 3.66 0.001758 0.014089
GO:0009742 brassinosteroid mediated signaling pathway 1.06% (2/189) 4.99 0.001753 0.014253
GO:0043401 steroid hormone mediated signaling pathway 1.06% (2/189) 4.99 0.001753 0.014253
GO:0008080 N-acetyltransferase activity 1.59% (3/189) 3.63 0.001855 0.014462
GO:0051020 GTPase binding 1.06% (2/189) 4.9 0.002017 0.015102
GO:0031267 small GTPase binding 1.06% (2/189) 4.9 0.002017 0.015102
GO:0070646 protein modification by small protein removal 1.59% (3/189) 3.58 0.00206 0.015222
GO:0006357 regulation of transcription by RNA polymerase II 2.12% (4/189) 2.92 0.002012 0.015468
GO:1901363 heterocyclic compound binding 14.81% (28/189) 0.83 0.00218 0.015704
GO:0004843 cysteine-type deubiquitinase activity 1.59% (3/189) 3.55 0.002167 0.01581
GO:2001141 regulation of RNA biosynthetic process 7.41% (14/189) 1.27 0.002281 0.016026
GO:0006355 regulation of DNA-templated transcription 7.41% (14/189) 1.27 0.002281 0.016026
GO:0036094 small molecule binding 14.81% (28/189) 0.82 0.002413 0.016541
GO:0051252 regulation of RNA metabolic process 7.41% (14/189) 1.26 0.002411 0.016733
GO:0016410 N-acyltransferase activity 1.59% (3/189) 3.48 0.00251 0.017001
GO:0019219 regulation of nucleobase-containing compound metabolic process 7.41% (14/189) 1.25 0.002583 0.017288
GO:0044238 primary metabolic process 22.75% (43/189) 0.61 0.002648 0.017518
GO:0050790 regulation of catalytic activity 1.59% (3/189) 3.43 0.002756 0.018024
GO:0007062 sister chromatid cohesion 1.06% (2/189) 4.63 0.002913 0.01842
GO:0003714 transcription corepressor activity 1.06% (2/189) 4.63 0.002913 0.01842
GO:0016307 obsolete phosphatidylinositol phosphate kinase activity 1.06% (2/189) 4.63 0.002913 0.01842
GO:0016407 acetyltransferase activity 1.59% (3/189) 3.36 0.003152 0.019283
GO:0016787 hydrolase activity 12.7% (24/189) 0.87 0.003123 0.019317
GO:0009987 cellular process 24.87% (47/189) 0.56 0.003107 0.019428
GO:0051168 nuclear export 1.06% (2/189) 4.55 0.003247 0.019653
GO:0071702 organic substance transport 3.7% (7/189) 1.86 0.003366 0.020162
GO:0065009 regulation of molecular function 1.59% (3/189) 3.32 0.003434 0.020354
GO:0006325 chromatin organization 1.59% (3/189) 3.3 0.003581 0.021005
GO:0033517 myo-inositol hexakisphosphate metabolic process 0.53% (1/189) 7.8 0.00448 0.022759
GO:0019140 inositol 3-kinase activity 0.53% (1/189) 7.8 0.00448 0.022759
GO:0010252 obsolete auxin homeostasis 0.53% (1/189) 7.8 0.00448 0.022759
GO:0007155 cell adhesion 0.53% (1/189) 7.8 0.00448 0.022759
GO:0010264 myo-inositol hexakisphosphate biosynthetic process 0.53% (1/189) 7.8 0.00448 0.022759
GO:0071692 protein localization to extracellular region 0.53% (1/189) 7.8 0.00448 0.022759
GO:0009306 protein secretion 0.53% (1/189) 7.8 0.00448 0.022759
GO:0035592 establishment of protein localization to extracellular region 0.53% (1/189) 7.8 0.00448 0.022759
GO:0071528 tRNA re-export from nucleus 0.53% (1/189) 7.8 0.00448 0.022759
GO:0071596 ubiquitin-dependent protein catabolic process via the N-end rule pathway 0.53% (1/189) 7.8 0.00448 0.022759
GO:0051031 tRNA transport 0.53% (1/189) 7.8 0.00448 0.022759
GO:0006409 tRNA export from nucleus 0.53% (1/189) 7.8 0.00448 0.022759
GO:0050080 malonyl-CoA decarboxylase activity 0.53% (1/189) 7.8 0.00448 0.022759
GO:0000956 nuclear-transcribed mRNA catabolic process 1.06% (2/189) 4.41 0.003964 0.023014
GO:0006644 phospholipid metabolic process 2.12% (4/189) 2.62 0.004219 0.024247
GO:0101005 deubiquitinase activity 1.59% (3/189) 3.14 0.004894 0.024641
GO:0019941 modification-dependent protein catabolic process 2.12% (4/189) 2.53 0.005336 0.026176
GO:0043632 modification-dependent macromolecule catabolic process 2.12% (4/189) 2.53 0.005336 0.026176
GO:0006511 ubiquitin-dependent protein catabolic process 2.12% (4/189) 2.53 0.005336 0.026176
GO:0019783 ubiquitin-like protein peptidase activity 1.59% (3/189) 3.07 0.005645 0.027453
GO:0071824 protein-DNA complex organization 1.59% (3/189) 3.05 0.005843 0.028175
GO:0016772 transferase activity, transferring phosphorus-containing groups 8.99% (17/189) 0.98 0.006013 0.028512
GO:0071704 organic substance metabolic process 23.28% (44/189) 0.54 0.006 0.028687
GO:0035556 intracellular signal transduction 2.12% (4/189) 2.46 0.006227 0.029281
GO:0016070 RNA metabolic process 4.76% (9/189) 1.43 0.006836 0.031882
GO:0005096 GTPase activator activity 1.06% (2/189) 3.99 0.00699 0.032073
GO:0006402 mRNA catabolic process 1.06% (2/189) 3.99 0.00699 0.032073
GO:0004000 adenosine deaminase activity 0.53% (1/189) 6.8 0.00894 0.03437
GO:0015770 sucrose transport 0.53% (1/189) 6.8 0.00894 0.03437
GO:0016303 1-phosphatidylinositol-3-kinase activity 0.53% (1/189) 6.8 0.00894 0.03437
GO:0002151 G-quadruplex RNA binding 0.53% (1/189) 6.8 0.00894 0.03437
GO:0015766 disaccharide transport 0.53% (1/189) 6.8 0.00894 0.03437
GO:0031087 deadenylation-independent decapping of nuclear-transcribed mRNA 0.53% (1/189) 6.8 0.00894 0.03437
GO:0004030 aldehyde dehydrogenase [NAD(P)+] activity 0.53% (1/189) 6.8 0.00894 0.03437
GO:0006997 nucleus organization 0.53% (1/189) 6.8 0.00894 0.03437
GO:0051345 positive regulation of hydrolase activity 0.53% (1/189) 6.8 0.00894 0.03437
GO:0097064 ncRNA export from nucleus 0.53% (1/189) 6.8 0.00894 0.03437
GO:0008515 sucrose transmembrane transporter activity 0.53% (1/189) 6.8 0.00894 0.03437
GO:0071339 MLL1 complex 0.53% (1/189) 6.8 0.00894 0.03437
GO:0004029 aldehyde dehydrogenase (NAD+) activity 0.53% (1/189) 6.8 0.00894 0.03437
GO:0044665 MLL1/2 complex 0.53% (1/189) 6.8 0.00894 0.03437
GO:0015772 oligosaccharide transport 0.53% (1/189) 6.8 0.00894 0.03437
GO:0032958 inositol phosphate biosynthetic process 0.53% (1/189) 6.8 0.00894 0.03437
GO:0043547 positive regulation of GTPase activity 0.53% (1/189) 6.8 0.00894 0.03437
GO:0015154 disaccharide transmembrane transporter activity 0.53% (1/189) 6.8 0.00894 0.03437
GO:0031499 TRAMP complex 0.53% (1/189) 6.8 0.00894 0.03437
GO:0015157 oligosaccharide transmembrane transporter activity 0.53% (1/189) 6.8 0.00894 0.03437
GO:0051603 proteolysis involved in protein catabolic process 2.12% (4/189) 2.38 0.007662 0.034877
GO:0140535 intracellular protein-containing complex 2.12% (4/189) 2.37 0.007816 0.035298
GO:0016740 transferase activity 14.29% (27/189) 0.69 0.009354 0.035722
GO:0006661 phosphatidylinositol biosynthetic process 1.06% (2/189) 3.9 0.007997 0.035827
GO:0016746 acyltransferase activity 4.23% (8/189) 1.48 0.008412 0.037392
GO:0019637 organophosphate metabolic process 3.17% (6/189) 1.73 0.009937 0.037693
GO:0016592 mediator complex 1.06% (2/189) 3.71 0.010193 0.038408
GO:0046872 metal ion binding 8.99% (17/189) 0.9 0.010337 0.038694
GO:0016043 cellular component organization 4.23% (8/189) 1.42 0.010796 0.040149
GO:0016301 kinase activity 7.94% (15/189) 0.94 0.012045 0.044505
GO:0006629 lipid metabolic process 3.7% (7/189) 1.51 0.012174 0.044689
GO:0038201 TOR complex 0.53% (1/189) 6.22 0.01338 0.044783
GO:0000347 THO complex 0.53% (1/189) 6.22 0.01338 0.044783
GO:0031929 TOR signaling 0.53% (1/189) 6.22 0.01338 0.044783
GO:1905393 plant organ formation 0.53% (1/189) 6.22 0.01338 0.044783
GO:0048646 anatomical structure formation involved in morphogenesis 0.53% (1/189) 6.22 0.01338 0.044783
GO:0031931 TORC1 complex 0.53% (1/189) 6.22 0.01338 0.044783
GO:0000829 inositol heptakisphosphate kinase activity 0.53% (1/189) 6.22 0.01338 0.044783
GO:0034243 regulation of transcription elongation by RNA polymerase II 0.53% (1/189) 6.22 0.01338 0.044783
GO:0032968 positive regulation of transcription elongation by RNA polymerase II 0.53% (1/189) 6.22 0.01338 0.044783
GO:0031491 nucleosome binding 0.53% (1/189) 6.22 0.01338 0.044783
GO:0015931 nucleobase-containing compound transport 1.06% (2/189) 3.55 0.012624 0.045753
GO:0006401 RNA catabolic process 1.06% (2/189) 3.55 0.012624 0.045753
GO:0043169 cation binding 8.99% (17/189) 0.85 0.013916 0.046307
GO:0043170 macromolecule metabolic process 16.93% (32/189) 0.58 0.013129 0.04728
GO:0046914 transition metal ion binding 6.35% (12/189) 1.06 0.013354 0.047489
GO:1901575 organic substance catabolic process 3.7% (7/189) 1.49 0.013328 0.047694
GO:0005575 cellular_component 13.23% (25/189) 0.67 0.014661 0.047942
GO:0051174 regulation of phosphorus metabolic process 1.06% (2/189) 3.44 0.014597 0.048009
GO:0019220 regulation of phosphate metabolic process 1.06% (2/189) 3.44 0.014597 0.048009
GO:0071705 nitrogen compound transport 2.65% (5/189) 1.8 0.014974 0.048687
GO:0008047 enzyme activator activity 1.06% (2/189) 3.41 0.015282 0.049406
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (189) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms