Coexpression cluster: Cluster_141 (Oryza sativa HCCA coexpression clusters - Wang et al (2014))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0043226 organelle 14.29% (7/49) 2.66 0.000109 0.009548
GO:0043229 intracellular organelle 14.29% (7/49) 2.66 0.000109 0.009548
GO:0003712 transcription coregulator activity 6.12% (3/49) 5.4 5.1e-05 0.01329
GO:0034641 cellular nitrogen compound metabolic process 18.37% (9/49) 2.05 0.000275 0.018052
GO:0043486 obsolete histone exchange 2.04% (1/49) 8.75 0.002322 0.02544
GO:0007009 plasma membrane organization 2.04% (1/49) 8.75 0.002322 0.02544
GO:0045332 phospholipid translocation 2.04% (1/49) 8.75 0.002322 0.02544
GO:0034204 lipid translocation 2.04% (1/49) 8.75 0.002322 0.02544
GO:0097035 regulation of membrane lipid distribution 2.04% (1/49) 8.75 0.002322 0.02544
GO:0017121 plasma membrane phospholipid scrambling 2.04% (1/49) 8.75 0.002322 0.02544
GO:0005665 RNA polymerase II, core complex 2.04% (1/49) 8.75 0.002322 0.02544
GO:0003856 3-dehydroquinate synthase activity 2.04% (1/49) 8.75 0.002322 0.02544
GO:0017128 phospholipid scramblase activity 2.04% (1/49) 8.75 0.002322 0.02544
GO:0000469 obsolete cleavage involved in rRNA processing 2.04% (1/49) 8.75 0.002322 0.02544
GO:0044271 cellular nitrogen compound biosynthetic process 10.2% (5/49) 2.35 0.002888 0.028129
GO:0008033 tRNA processing 4.08% (2/49) 4.66 0.002867 0.028996
GO:0005575 cellular_component 24.49% (12/49) 1.55 0.000552 0.029032
GO:0140513 nuclear protein-containing complex 6.12% (3/49) 3.42 0.002827 0.029739
GO:0016592 mediator complex 4.08% (2/49) 5.66 0.000724 0.031732
GO:0005548 phospholipid transporter activity 2.04% (1/49) 8.16 0.00348 0.03269
GO:0034471 ncRNA 5'-end processing 2.04% (1/49) 7.75 0.004638 0.03485
GO:0001682 tRNA 5'-leader removal 2.04% (1/49) 7.75 0.004638 0.03485
GO:0000966 RNA 5'-end processing 2.04% (1/49) 7.75 0.004638 0.03485
GO:0099116 tRNA 5'-end processing 2.04% (1/49) 7.75 0.004638 0.03485
GO:0030677 ribonuclease P complex 2.04% (1/49) 7.75 0.004638 0.03485
GO:0004809 obsolete tRNA (guanine-N2-)-methyltransferase activity 2.04% (1/49) 7.75 0.004638 0.03485
GO:0046084 adenine biosynthetic process 2.04% (1/49) 7.43 0.005794 0.036282
GO:0006168 adenine salvage 2.04% (1/49) 7.43 0.005794 0.036282
GO:0046083 adenine metabolic process 2.04% (1/49) 7.43 0.005794 0.036282
GO:0043096 purine nucleobase salvage 2.04% (1/49) 7.43 0.005794 0.036282
GO:1902555 endoribonuclease complex 2.04% (1/49) 7.43 0.005794 0.036282
GO:0003999 adenine phosphoribosyltransferase activity 2.04% (1/49) 7.43 0.005794 0.036282
GO:0006139 nucleobase-containing compound metabolic process 12.24% (6/49) 1.9 0.005115 0.03737
GO:1901576 organic substance biosynthetic process 12.24% (6/49) 1.85 0.006145 0.037585
GO:1902494 catalytic complex 6.12% (3/49) 3.0 0.006315 0.037745
GO:0044249 cellular biosynthetic process 12.24% (6/49) 1.96 0.004204 0.038124
GO:0006144 purine nucleobase metabolic process 2.04% (1/49) 6.43 0.011555 0.038468
GO:0043101 purine-containing compound salvage 2.04% (1/49) 6.43 0.011555 0.038468
GO:0043254 regulation of protein-containing complex assembly 2.04% (1/49) 6.43 0.011555 0.038468
GO:0032271 regulation of protein polymerization 2.04% (1/49) 6.43 0.011555 0.038468
GO:1902903 regulation of supramolecular fiber organization 2.04% (1/49) 6.43 0.011555 0.038468
GO:0005840 ribosome 6.12% (3/49) 2.94 0.007094 0.038869
GO:0005885 Arp2/3 protein complex 2.04% (1/49) 7.16 0.006949 0.038884
GO:0106130 purine phosphoribosyltransferase activity 2.04% (1/49) 7.16 0.006949 0.038884
GO:1905348 endonuclease complex 2.04% (1/49) 7.16 0.006949 0.038884
GO:0043604 amide biosynthetic process 6.12% (3/49) 2.67 0.011829 0.038886
GO:0110053 regulation of actin filament organization 2.04% (1/49) 6.58 0.010405 0.039095
GO:0032970 regulation of actin filament-based process 2.04% (1/49) 6.58 0.010405 0.039095
GO:0008064 regulation of actin polymerization or depolymerization 2.04% (1/49) 6.58 0.010405 0.039095
GO:0032956 regulation of actin cytoskeleton organization 2.04% (1/49) 6.58 0.010405 0.039095
GO:0030833 regulation of actin filament polymerization 2.04% (1/49) 6.58 0.010405 0.039095
GO:0030832 regulation of actin filament length 2.04% (1/49) 6.58 0.010405 0.039095
GO:0009113 purine nucleobase biosynthetic process 2.04% (1/49) 6.58 0.010405 0.039095
GO:0006518 peptide metabolic process 6.12% (3/49) 2.69 0.011215 0.039859
GO:0090304 nucleic acid metabolic process 10.2% (5/49) 1.98 0.008499 0.039914
GO:0006357 regulation of transcription by RNA polymerase II 4.08% (2/49) 3.87 0.008372 0.040032
GO:0006396 RNA processing 6.12% (3/49) 2.86 0.008239 0.040129
GO:1990234 transferase complex 4.08% (2/49) 3.65 0.011141 0.04014
GO:0016070 RNA metabolic process 8.16% (4/49) 2.2 0.011003 0.040192
GO:0055029 nuclear DNA-directed RNA polymerase complex 2.04% (1/49) 6.94 0.008102 0.040206
GO:0000124 SAGA complex 2.04% (1/49) 6.94 0.008102 0.040206
GO:0034314 Arp2/3 complex-mediated actin nucleation 2.04% (1/49) 6.94 0.008102 0.040206
GO:0032535 regulation of cellular component size 2.04% (1/49) 6.29 0.012703 0.040253
GO:0090066 regulation of anatomical structure size 2.04% (1/49) 6.29 0.012703 0.040253
GO:0000428 DNA-directed RNA polymerase complex 2.04% (1/49) 6.29 0.012703 0.040253
GO:0034470 ncRNA processing 4.08% (2/49) 3.66 0.010987 0.040698
GO:0140535 intracellular protein-containing complex 6.12% (3/49) 3.9 0.001087 0.040835
GO:0046483 heterocycle metabolic process 12.24% (6/49) 1.78 0.007745 0.041569
GO:0009059 macromolecule biosynthetic process 8.16% (4/49) 2.34 0.007907 0.041592
GO:0009058 biosynthetic process 12.24% (6/49) 1.73 0.009075 0.041873
GO:0006412 translation 6.12% (3/49) 2.8 0.009284 0.042097
GO:0140303 intramembrane lipid transporter activity 2.04% (1/49) 6.16 0.01385 0.042356
GO:0070461 SAGA-type complex 2.04% (1/49) 6.16 0.01385 0.042356
GO:0065007 biological regulation 14.29% (7/49) 1.43 0.01412 0.042683
GO:0110165 cellular anatomical entity 16.33% (8/49) 1.41 0.0096 0.042791
GO:0005634 nucleus 6.12% (3/49) 2.74 0.010259 0.042825
GO:0043043 peptide biosynthetic process 6.12% (3/49) 2.76 0.009974 0.043004
GO:0032991 protein-containing complex 12.24% (6/49) 2.14 0.002289 0.043009
GO:0005198 structural molecule activity 6.12% (3/49) 2.58 0.013784 0.043157
GO:0030880 RNA polymerase complex 2.04% (1/49) 6.05 0.014996 0.04334
GO:0015914 phospholipid transport 2.04% (1/49) 6.05 0.014996 0.04334
GO:0006399 tRNA metabolic process 4.08% (2/49) 3.72 0.010228 0.043389
GO:0003735 structural constituent of ribosome 6.12% (3/49) 2.76 0.009904 0.043412
GO:0019438 aromatic compound biosynthetic process 6.12% (3/49) 2.55 0.014738 0.043551
GO:0043603 amide metabolic process 6.12% (3/49) 2.55 0.014738 0.043551
GO:1901360 organic cyclic compound metabolic process 14.29% (7/49) 1.93 0.002195 0.044412
GO:1901566 organonitrogen compound biosynthetic process 10.2% (5/49) 2.47 0.002031 0.044507
GO:0006725 cellular aromatic compound metabolic process 14.29% (7/49) 1.96 0.00197 0.047101
GO:0065008 regulation of biological quality 4.08% (2/49) 4.99 0.001819 0.047852
GO:0043228 non-membrane-bounded organelle 8.16% (4/49) 2.98 0.001679 0.049054
GO:0043232 intracellular non-membrane-bounded organelle 8.16% (4/49) 2.98 0.001679 0.049054
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (49) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms