Coexpression cluster: Cluster_79 (Oryza sativa HCCA coexpression clusters - Wang et al (2014))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0044271 cellular nitrogen compound biosynthetic process 21.55% (25/116) 3.43 0.0 0.0
GO:1901566 organonitrogen compound biosynthetic process 20.69% (24/116) 3.49 0.0 0.0
GO:0044237 cellular metabolic process 41.38% (48/116) 1.9 0.0 0.0
GO:0098796 membrane protein complex 13.79% (16/116) 4.34 0.0 0.0
GO:0006412 translation 14.66% (17/116) 4.05 0.0 0.0
GO:0043043 peptide biosynthetic process 14.66% (17/116) 4.02 0.0 0.0
GO:0003735 structural constituent of ribosome 14.66% (17/116) 4.02 0.0 0.0
GO:0015979 photosynthesis 9.48% (11/116) 5.52 0.0 0.0
GO:0006518 peptide metabolic process 14.66% (17/116) 3.95 0.0 0.0
GO:0043604 amide biosynthetic process 14.66% (17/116) 3.93 0.0 0.0
GO:0005198 structural molecule activity 14.66% (17/116) 3.84 0.0 0.0
GO:0043228 non-membrane-bounded organelle 14.66% (17/116) 3.82 0.0 0.0
GO:0043232 intracellular non-membrane-bounded organelle 14.66% (17/116) 3.82 0.0 0.0
GO:0043603 amide metabolic process 14.66% (17/116) 3.81 0.0 0.0
GO:0032991 protein-containing complex 20.69% (24/116) 2.9 0.0 0.0
GO:0044249 cellular biosynthetic process 21.55% (25/116) 2.78 0.0 0.0
GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity 6.03% (7/116) 7.14 0.0 0.0
GO:0022900 electron transport chain 8.62% (10/116) 5.44 0.0 0.0
GO:0019684 photosynthesis, light reaction 6.03% (7/116) 6.99 0.0 0.0
GO:0009767 photosynthetic electron transport chain 6.9% (8/116) 6.34 0.0 0.0
GO:0005575 cellular_component 32.76% (38/116) 1.97 0.0 0.0
GO:1901576 organic substance biosynthetic process 21.55% (25/116) 2.66 0.0 0.0
GO:0009055 electron transfer activity 9.48% (11/116) 4.81 0.0 0.0
GO:0009059 macromolecule biosynthetic process 15.52% (18/116) 3.27 0.0 0.0
GO:0005840 ribosome 12.07% (14/116) 3.92 0.0 0.0
GO:0009058 biosynthetic process 21.55% (25/116) 2.54 0.0 0.0
GO:0009521 photosystem 7.76% (9/116) 5.43 0.0 0.0
GO:0009772 photosynthetic electron transport in photosystem II 5.17% (6/116) 7.28 0.0 0.0
GO:0009987 cellular process 44.83% (52/116) 1.41 0.0 0.0
GO:0008152 metabolic process 44.83% (52/116) 1.39 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 22.41% (26/116) 2.33 0.0 0.0
GO:0006754 ATP biosynthetic process 6.03% (7/116) 5.79 0.0 0.0
GO:0015986 proton motive force-driven ATP synthesis 6.03% (7/116) 5.79 0.0 0.0
GO:0006091 generation of precursor metabolites and energy 8.62% (10/116) 4.32 0.0 0.0
GO:0009145 purine nucleoside triphosphate biosynthetic process 6.03% (7/116) 5.64 0.0 0.0
GO:0009206 purine ribonucleoside triphosphate biosynthetic process 6.03% (7/116) 5.64 0.0 0.0
GO:0043229 intracellular organelle 15.52% (18/116) 2.78 0.0 0.0
GO:0043226 organelle 15.52% (18/116) 2.78 0.0 0.0
GO:0009523 photosystem II 6.03% (7/116) 5.51 0.0 0.0
GO:0009142 nucleoside triphosphate biosynthetic process 6.03% (7/116) 5.48 0.0 0.0
GO:0009201 ribonucleoside triphosphate biosynthetic process 6.03% (7/116) 5.48 0.0 0.0
GO:0044391 ribosomal subunit 6.9% (8/116) 4.88 0.0 0.0
GO:0110165 cellular anatomical entity 23.28% (27/116) 1.92 0.0 0.0
GO:0009152 purine ribonucleotide biosynthetic process 6.03% (7/116) 5.01 0.0 0.0
GO:0046390 ribose phosphate biosynthetic process 6.03% (7/116) 4.87 0.0 0.0
GO:0009260 ribonucleotide biosynthetic process 6.03% (7/116) 4.87 0.0 0.0
GO:0016168 chlorophyll binding 3.45% (4/116) 7.34 0.0 0.0
GO:0006164 purine nucleotide biosynthetic process 6.03% (7/116) 4.76 0.0 0.0
GO:0015078 proton transmembrane transporter activity 6.03% (7/116) 4.66 0.0 0.0
GO:0072522 purine-containing compound biosynthetic process 6.03% (7/116) 4.59 0.0 0.0
GO:0046034 ATP metabolic process 6.03% (7/116) 4.53 0.0 0.0
GO:0009144 purine nucleoside triphosphate metabolic process 6.03% (7/116) 4.47 0.0 0.0
GO:0009205 purine ribonucleoside triphosphate metabolic process 6.03% (7/116) 4.47 0.0 0.0
GO:0009199 ribonucleoside triphosphate metabolic process 6.03% (7/116) 4.4 0.0 0.0
GO:0009165 nucleotide biosynthetic process 6.03% (7/116) 4.38 0.0 0.0
GO:1901293 nucleoside phosphate biosynthetic process 6.03% (7/116) 4.38 0.0 0.0
GO:0009141 nucleoside triphosphate metabolic process 6.03% (7/116) 4.35 0.0 0.0
GO:1990904 ribonucleoprotein complex 6.9% (8/116) 3.92 0.0 0.0
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) 3.45% (4/116) 6.34 0.0 1e-06
GO:1901137 carbohydrate derivative biosynthetic process 6.03% (7/116) 4.13 0.0 1e-06
GO:0015935 small ribosomal subunit 4.31% (5/116) 5.27 0.0 1e-06
GO:0009150 purine ribonucleotide metabolic process 6.03% (7/116) 3.99 0.0 1e-06
GO:1901564 organonitrogen compound metabolic process 26.72% (31/116) 1.4 0.0 2e-06
GO:0009259 ribonucleotide metabolic process 6.03% (7/116) 3.92 0.0 2e-06
GO:0019693 ribose phosphate metabolic process 6.03% (7/116) 3.9 1e-06 2e-06
GO:0034654 nucleobase-containing compound biosynthetic process 7.76% (9/116) 3.23 1e-06 2e-06
GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain 3.45% (4/116) 5.7 1e-06 5e-06
GO:0006163 purine nucleotide metabolic process 6.03% (7/116) 3.74 1e-06 5e-06
GO:0008150 biological_process 50.0% (58/116) 0.79 1e-06 6e-06
GO:0072521 purine-containing compound metabolic process 6.03% (7/116) 3.64 2e-06 7e-06
GO:0090407 organophosphate biosynthetic process 6.03% (7/116) 3.55 3e-06 1.1e-05
GO:0009117 nucleotide metabolic process 6.03% (7/116) 3.53 3e-06 1.1e-05
GO:0006753 nucleoside phosphate metabolic process 6.03% (7/116) 3.51 3e-06 1.2e-05
GO:0019438 aromatic compound biosynthetic process 7.76% (9/116) 2.89 4e-06 1.6e-05
GO:0018130 heterocycle biosynthetic process 7.76% (9/116) 2.89 4e-06 1.6e-05
GO:0006807 nitrogen compound metabolic process 28.45% (33/116) 1.17 4e-06 1.7e-05
GO:0022890 inorganic cation transmembrane transporter activity 6.03% (7/116) 3.38 5e-06 2e-05
GO:0016491 oxidoreductase activity 13.79% (16/116) 1.87 8e-06 3e-05
GO:1901362 organic cyclic compound biosynthetic process 7.76% (9/116) 2.75 9e-06 3.2e-05
GO:0055086 nucleobase-containing small molecule metabolic process 6.03% (7/116) 3.25 1e-05 3.5e-05
GO:0008324 monoatomic cation transmembrane transporter activity 6.03% (7/116) 3.22 1.2e-05 4.1e-05
GO:1901135 carbohydrate derivative metabolic process 6.03% (7/116) 3.15 1.5e-05 5.3e-05
GO:0015318 inorganic molecular entity transmembrane transporter activity 6.03% (7/116) 3.08 2.1e-05 7.3e-05
GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) 2.59% (3/116) 5.63 3e-05 0.000103
GO:0019538 protein metabolic process 20.69% (24/116) 1.3 3.1e-05 0.000107
GO:0009579 thylakoid 2.59% (3/116) 5.57 3.4e-05 0.000116
GO:0015075 monoatomic ion transmembrane transporter activity 6.03% (7/116) 2.92 4.3e-05 0.000143
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism 2.59% (3/116) 5.39 5e-05 0.000163
GO:0015252 proton channel activity 2.59% (3/116) 5.39 5e-05 0.000163
GO:0016984 ribulose-bisphosphate carboxylase activity 1.72% (2/116) 7.18 7.5e-05 0.000239
GO:0071704 organic substance metabolic process 30.17% (35/116) 0.91 0.000102 0.000324
GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain 2.59% (3/116) 5.05 0.000104 0.000327
GO:0044238 primary metabolic process 28.45% (33/116) 0.93 0.000132 0.000405
GO:0019637 organophosphate metabolic process 6.03% (7/116) 2.66 0.000131 0.000409
GO:0022857 transmembrane transporter activity 9.48% (11/116) 1.94 0.000147 0.000447
GO:0019843 rRNA binding 2.59% (3/116) 4.84 0.000159 0.000479
GO:0005215 transporter activity 9.48% (11/116) 1.9 0.000183 0.000546
GO:0046906 tetrapyrrole binding 6.9% (8/116) 2.3 0.000242 0.000713
GO:0003674 molecular_function 58.62% (68/116) 0.46 0.000409 0.001158
GO:0015934 large ribosomal subunit 2.59% (3/116) 4.39 0.000406 0.001161
GO:0009539 photosystem II reaction center 1.72% (2/116) 6.05 0.000406 0.001172
GO:0015977 carbon fixation 1.72% (2/116) 6.05 0.000406 0.001172
GO:0043170 macromolecule metabolic process 22.41% (26/116) 0.99 0.000475 0.001332
GO:1902600 proton transmembrane transport 2.59% (3/116) 4.28 0.000505 0.001403
GO:0016651 oxidoreductase activity, acting on NAD(P)H 2.59% (3/116) 4.16 0.000649 0.001769
GO:0005261 monoatomic cation channel activity 2.59% (3/116) 4.16 0.000649 0.001769
GO:0009522 photosystem I 1.72% (2/116) 5.42 0.000992 0.00268
GO:0003723 RNA binding 6.9% (8/116) 1.9 0.001464 0.003918
GO:0008137 NADH dehydrogenase (ubiquinone) activity 1.72% (2/116) 4.81 0.002333 0.006129
GO:0050136 NADH dehydrogenase (quinone) activity 1.72% (2/116) 4.81 0.002333 0.006129
GO:0015453 oxidoreduction-driven active transmembrane transporter activity 1.72% (2/116) 4.6 0.0031 0.008
GO:0003955 NAD(P)H dehydrogenase (quinone) activity 1.72% (2/116) 4.6 0.0031 0.008
GO:0003954 NADH dehydrogenase activity 1.72% (2/116) 4.55 0.003308 0.008461
GO:0097159 organic cyclic compound binding 25.86% (30/116) 0.72 0.003398 0.008613
GO:0022904 respiratory electron transport chain 1.72% (2/116) 4.51 0.003522 0.008852
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor 1.72% (2/116) 4.42 0.00397 0.00989
GO:0098655 monoatomic cation transmembrane transport 2.59% (3/116) 3.18 0.004503 0.011122
GO:0006139 nucleobase-containing compound metabolic process 8.62% (10/116) 1.4 0.004867 0.011819
GO:0016020 membrane 7.76% (9/116) 1.5 0.004827 0.011822
GO:0005216 monoatomic ion channel activity 2.59% (3/116) 3.14 0.004933 0.01188
GO:0043169 cation binding 11.21% (13/116) 1.17 0.005228 0.012488
GO:0034220 monoatomic ion transmembrane transport 2.59% (3/116) 3.08 0.005504 0.013039
GO:0000287 magnesium ion binding 2.59% (3/116) 3.07 0.005623 0.013213
GO:0098662 inorganic cation transmembrane transport 2.59% (3/116) 3.04 0.005989 0.013959
GO:0098660 inorganic ion transmembrane transport 2.59% (3/116) 2.92 0.007451 0.017226
GO:0015919 peroxisomal membrane transport 0.86% (1/116) 6.92 0.008226 0.018573
GO:0043574 peroxisomal transport 0.86% (1/116) 6.92 0.008226 0.018573
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 1.72% (2/116) 3.89 0.008101 0.018581
GO:0044281 small molecule metabolic process 6.03% (7/116) 1.6 0.008594 0.019253
GO:0046483 heterocycle metabolic process 8.62% (10/116) 1.27 0.008774 0.019506
GO:0034062 5'-3' RNA polymerase activity 1.72% (2/116) 3.75 0.00977 0.021391
GO:0097747 RNA polymerase activity 1.72% (2/116) 3.75 0.00977 0.021391
GO:0046872 metal ion binding 10.34% (12/116) 1.1 0.010313 0.02241
GO:0006725 cellular aromatic compound metabolic process 8.62% (10/116) 1.23 0.010464 0.022568
GO:0042301 phosphate ion binding 0.86% (1/116) 6.51 0.010953 0.023106
GO:0050821 protein stabilization 0.86% (1/116) 6.51 0.010953 0.023106
GO:0031647 regulation of protein stability 0.86% (1/116) 6.51 0.010953 0.023106
GO:0016874 ligase activity 2.59% (3/116) 2.69 0.0115 0.024084
GO:1901360 organic cyclic compound metabolic process 8.62% (10/116) 1.2 0.01185 0.024639
GO:0022803 passive transmembrane transporter activity 2.59% (3/116) 2.64 0.012627 0.02588
GO:0015267 channel activity 2.59% (3/116) 2.64 0.012627 0.02588
GO:0031361 obsolete integral component of thylakoid membrane 0.86% (1/116) 6.18 0.013673 0.027633
GO:0042549 photosystem II stabilization 0.86% (1/116) 6.18 0.013673 0.027633
GO:0003824 catalytic activity 31.03% (36/116) 0.5 0.015076 0.030257
GO:0042548 regulation of photosynthesis, light reaction 0.86% (1/116) 5.92 0.016385 0.032213
GO:0010109 regulation of photosynthesis 0.86% (1/116) 5.92 0.016385 0.032213
GO:0043467 regulation of generation of precursor metabolites and energy 0.86% (1/116) 5.92 0.016385 0.032213
GO:0016831 carboxy-lyase activity 1.72% (2/116) 3.3 0.017796 0.034751
GO:0043167 ion binding 19.83% (23/116) 0.65 0.017924 0.034765
GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway 0.86% (1/116) 5.51 0.021788 0.041154
GO:0004143 ATP-dependent diacylglycerol kinase activity 0.86% (1/116) 5.51 0.021788 0.041154
GO:0032549 ribonucleoside binding 0.86% (1/116) 5.51 0.021788 0.041154
GO:0001882 nucleoside binding 0.86% (1/116) 5.51 0.021788 0.041154
GO:0006796 phosphate-containing compound metabolic process 9.48% (11/116) 0.99 0.023119 0.043386
GO:0006793 phosphorus metabolic process 9.48% (11/116) 0.99 0.023566 0.043939
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (116) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms