Coexpression cluster: Cluster_184 (Oryza sativa HCCA coexpression clusters - Wang et al (2014))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0005575 cellular_component 28.36% (19/67) 1.77 1e-06 0.000588
GO:0003674 molecular_function 68.66% (46/67) 0.68 1.6e-05 0.002175
GO:0005737 cytoplasm 7.46% (5/67) 4.0 1.6e-05 0.003246
GO:0043038 amino acid activation 4.48% (3/67) 4.91 0.000142 0.003366
GO:0006418 tRNA aminoacylation for protein translation 4.48% (3/67) 4.91 0.000142 0.003366
GO:0016875 ligase activity, forming carbon-oxygen bonds 4.48% (3/67) 4.91 0.000142 0.003366
GO:0004812 aminoacyl-tRNA ligase activity 4.48% (3/67) 4.91 0.000142 0.003366
GO:0043039 tRNA aminoacylation 4.48% (3/67) 4.91 0.000142 0.003366
GO:0016874 ligase activity 5.97% (4/67) 3.9 0.000156 0.003502
GO:0044281 small molecule metabolic process 11.94% (8/67) 2.59 5.4e-05 0.004381
GO:0006457 protein folding 5.97% (4/67) 4.37 4.4e-05 0.004464
GO:0009987 cellular process 35.82% (24/67) 1.09 0.00014 0.004707
GO:0042026 protein refolding 2.99% (2/67) 6.84 0.000135 0.00496
GO:0016817 hydrolase activity, acting on acid anhydrides 8.96% (6/67) 2.96 0.000125 0.00503
GO:0017111 ribonucleoside triphosphate phosphatase activity 8.96% (6/67) 3.09 7.7e-05 0.005183
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 8.96% (6/67) 2.96 0.000122 0.005465
GO:0032991 protein-containing complex 13.43% (9/67) 2.27 9.6e-05 0.00554
GO:0016462 pyrophosphatase activity 8.96% (6/67) 2.99 0.00011 0.005552
GO:0070069 cytochrome complex 2.99% (2/67) 6.21 0.000333 0.006704
GO:0034660 ncRNA metabolic process 5.97% (4/67) 3.62 0.000327 0.006927
GO:0140101 catalytic activity, acting on a tRNA 4.48% (3/67) 4.27 0.000523 0.010031
GO:0005839 proteasome core complex 2.99% (2/67) 5.77 0.000615 0.011269
GO:0110165 cellular anatomical entity 17.91% (12/67) 1.54 0.000731 0.012283
GO:0034641 cellular nitrogen compound metabolic process 14.93% (10/67) 1.75 0.000726 0.012727
GO:0006208 pyrimidine nucleobase catabolic process 1.49% (1/67) 9.3 0.001588 0.014545
GO:0004358 glutamate N-acetyltransferase activity 1.49% (1/67) 9.3 0.001588 0.014545
GO:0046113 nucleobase catabolic process 1.49% (1/67) 9.3 0.001588 0.014545
GO:0019859 thymine metabolic process 1.49% (1/67) 9.3 0.001588 0.014545
GO:0006212 uracil catabolic process 1.49% (1/67) 9.3 0.001588 0.014545
GO:0006210 thymine catabolic process 1.49% (1/67) 9.3 0.001588 0.014545
GO:0004314 [acyl-carrier-protein] S-malonyltransferase activity 1.49% (1/67) 9.3 0.001588 0.014545
GO:0016419 S-malonyltransferase activity 1.49% (1/67) 9.3 0.001588 0.014545
GO:0016420 malonyltransferase activity 1.49% (1/67) 9.3 0.001588 0.014545
GO:0016887 ATP hydrolysis activity 5.97% (4/67) 3.21 0.000942 0.014595
GO:0098803 respiratory chain complex 2.99% (2/67) 5.49 0.000914 0.01474
GO:1902494 catalytic complex 5.97% (4/67) 2.96 0.001769 0.015842
GO:0097159 organic cyclic compound binding 31.34% (21/67) 0.99 0.001072 0.016005
GO:0098796 membrane protein complex 5.97% (4/67) 3.13 0.001163 0.016734
GO:0006399 tRNA metabolic process 4.48% (3/67) 3.85 0.001212 0.016845
GO:0006082 organic acid metabolic process 7.46% (5/67) 2.59 0.001462 0.017331
GO:0043436 oxoacid metabolic process 7.46% (5/67) 2.6 0.00145 0.017707
GO:0017076 purine nucleotide binding 19.4% (13/67) 1.34 0.001543 0.017764
GO:0019752 carboxylic acid metabolic process 7.46% (5/67) 2.6 0.001414 0.017803
GO:0006520 amino acid metabolic process 5.97% (4/67) 3.07 0.001334 0.017924
GO:0003824 catalytic activity 38.81% (26/67) 0.82 0.001383 0.017983
GO:0000166 nucleotide binding 19.4% (13/67) 1.27 0.002359 0.020228
GO:1901265 nucleoside phosphate binding 19.4% (13/67) 1.27 0.002359 0.020228
GO:0004827 proline-tRNA ligase activity 1.49% (1/67) 8.3 0.003174 0.020302
GO:0006435 threonyl-tRNA aminoacylation 1.49% (1/67) 8.3 0.003174 0.020302
GO:0006430 lysyl-tRNA aminoacylation 1.49% (1/67) 8.3 0.003174 0.020302
GO:0006433 prolyl-tRNA aminoacylation 1.49% (1/67) 8.3 0.003174 0.020302
GO:0004824 lysine-tRNA ligase activity 1.49% (1/67) 8.3 0.003174 0.020302
GO:0072583 clathrin-dependent endocytosis 1.49% (1/67) 8.3 0.003174 0.020302
GO:0004829 threonine-tRNA ligase activity 1.49% (1/67) 8.3 0.003174 0.020302
GO:0030122 AP-2 adaptor complex 1.49% (1/67) 8.3 0.003174 0.020302
GO:0042134 rRNA primary transcript binding 1.49% (1/67) 8.3 0.003174 0.020302
GO:0006898 receptor-mediated endocytosis 1.49% (1/67) 8.3 0.003174 0.020302
GO:0019860 uracil metabolic process 1.49% (1/67) 8.3 0.003174 0.020302
GO:0009555 pollen development 1.49% (1/67) 8.3 0.003174 0.020302
GO:0048229 gametophyte development 1.49% (1/67) 8.3 0.003174 0.020302
GO:0044238 primary metabolic process 28.36% (19/67) 0.93 0.003401 0.020457
GO:0006807 nitrogen compound metabolic process 25.37% (17/67) 1.01 0.003356 0.02049
GO:1901564 organonitrogen compound metabolic process 22.39% (15/67) 1.15 0.002451 0.020578
GO:0005488 binding 43.28% (29/67) 0.67 0.003337 0.020688
GO:1901363 heterocyclic compound binding 19.4% (13/67) 1.22 0.003307 0.020821
GO:0036094 small molecule binding 19.4% (13/67) 1.21 0.003514 0.020825
GO:0140535 intracellular protein-containing complex 4.48% (3/67) 3.45 0.002678 0.021581
GO:0035639 purine ribonucleoside triphosphate binding 16.42% (11/67) 1.4 0.00266 0.021875
GO:0008150 biological_process 44.78% (30/67) 0.63 0.004059 0.023706
GO:0032561 guanyl ribonucleotide binding 4.48% (3/67) 3.18 0.004487 0.025469
GO:0005525 GTP binding 4.48% (3/67) 3.18 0.004487 0.025469
GO:0072546 EMC complex 1.49% (1/67) 7.71 0.004757 0.02556
GO:0004486 methylenetetrahydrofolate dehydrogenase [NAD(P)+] activity 1.49% (1/67) 7.71 0.004757 0.02556
GO:0032543 mitochondrial translation 1.49% (1/67) 7.71 0.004757 0.02556
GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity 1.49% (1/67) 7.71 0.004757 0.02556
GO:0019001 guanyl nucleotide binding 4.48% (3/67) 3.14 0.004856 0.025749
GO:0035615 clathrin adaptor activity 1.49% (1/67) 7.3 0.006337 0.028378
GO:0072530 purine-containing compound transmembrane transport 1.49% (1/67) 7.3 0.006337 0.028378
GO:0140021 mitochondrial ADP transmembrane transport 1.49% (1/67) 7.3 0.006337 0.028378
GO:0006471 obsolete protein ADP-ribosylation 1.49% (1/67) 7.3 0.006337 0.028378
GO:0051503 adenine nucleotide transport 1.49% (1/67) 7.3 0.006337 0.028378
GO:1990544 mitochondrial ATP transmembrane transport 1.49% (1/67) 7.3 0.006337 0.028378
GO:0140312 cargo adaptor activity 1.49% (1/67) 7.3 0.006337 0.028378
GO:1901679 nucleotide transmembrane transport 1.49% (1/67) 7.3 0.006337 0.028378
GO:0015865 purine nucleotide transport 1.49% (1/67) 7.3 0.006337 0.028378
GO:0015866 ADP transport 1.49% (1/67) 7.3 0.006337 0.028378
GO:0015867 ATP transport 1.49% (1/67) 7.3 0.006337 0.028378
GO:0072529 pyrimidine-containing compound catabolic process 1.49% (1/67) 7.3 0.006337 0.028378
GO:0015868 purine ribonucleotide transport 1.49% (1/67) 7.3 0.006337 0.028378
GO:0016070 RNA metabolic process 7.46% (5/67) 2.08 0.006721 0.029764
GO:0008152 metabolic process 29.85% (20/67) 0.81 0.006883 0.030152
GO:0006621 protein retention in ER lumen 1.49% (1/67) 6.98 0.007916 0.031275
GO:0032507 maintenance of protein location in cell 1.49% (1/67) 6.98 0.007916 0.031275
GO:0035437 maintenance of protein localization in endoplasmic reticulum 1.49% (1/67) 6.98 0.007916 0.031275
GO:0045185 maintenance of protein location 1.49% (1/67) 6.98 0.007916 0.031275
GO:0046923 ER retention sequence binding 1.49% (1/67) 6.98 0.007916 0.031275
GO:0051651 maintenance of location in cell 1.49% (1/67) 6.98 0.007916 0.031275
GO:0072595 maintenance of protein localization in organelle 1.49% (1/67) 6.98 0.007916 0.031275
GO:0003723 RNA binding 7.46% (5/67) 2.01 0.008063 0.031548
GO:0051287 NAD binding 2.99% (2/67) 3.96 0.007425 0.032173
GO:0006139 nucleobase-containing compound metabolic process 10.45% (7/67) 1.67 0.006246 0.032689
GO:0071704 organic substance metabolic process 28.36% (19/67) 0.82 0.007651 0.032802
GO:1901566 organonitrogen compound biosynthetic process 7.46% (5/67) 2.02 0.007855 0.033321
GO:0032555 purine ribonucleotide binding 16.42% (11/67) 1.16 0.009128 0.035371
GO:0006897 endocytosis 1.49% (1/67) 6.71 0.009491 0.035417
GO:0070534 protein K63-linked ubiquitination 1.49% (1/67) 6.71 0.009491 0.035417
GO:0098657 import into cell 1.49% (1/67) 6.71 0.009491 0.035417
GO:0016417 S-acyltransferase activity 1.49% (1/67) 6.71 0.009491 0.035417
GO:0046483 heterocycle metabolic process 10.45% (7/67) 1.55 0.009857 0.036114
GO:0032553 ribonucleotide binding 16.42% (11/67) 1.15 0.009799 0.036231
GO:0097367 carbohydrate derivative binding 16.42% (11/67) 1.14 0.010368 0.037644
GO:0030008 TRAPP complex 1.49% (1/67) 6.49 0.011065 0.039461
GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor 1.49% (1/67) 6.49 0.011065 0.039461
GO:0006725 cellular aromatic compound metabolic process 10.45% (7/67) 1.51 0.01131 0.039984
GO:0031090 organelle membrane 2.99% (2/67) 3.61 0.011771 0.04125
GO:0005750 mitochondrial respiratory chain complex III 1.49% (1/67) 6.3 0.012635 0.041738
GO:0005471 ATP:ADP antiporter activity 1.49% (1/67) 6.3 0.012635 0.041738
GO:0051235 maintenance of location 1.49% (1/67) 6.3 0.012635 0.041738
GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c 1.49% (1/67) 6.3 0.012635 0.041738
GO:0045277 respiratory chain complex IV 1.49% (1/67) 6.3 0.012635 0.041738
GO:0045275 respiratory chain complex III 1.49% (1/67) 6.3 0.012635 0.041738
GO:1901360 organic cyclic compound metabolic process 10.45% (7/67) 1.48 0.012469 0.043318
GO:0015605 organophosphate ester transmembrane transporter activity 1.49% (1/67) 6.13 0.014204 0.043364
GO:0015217 ADP transmembrane transporter activity 1.49% (1/67) 6.13 0.014204 0.043364
GO:0003950 NAD+ ADP-ribosyltransferase activity 1.49% (1/67) 6.13 0.014204 0.043364
GO:0008514 organic anion transmembrane transporter activity 1.49% (1/67) 6.13 0.014204 0.043364
GO:0015216 purine nucleotide transmembrane transporter activity 1.49% (1/67) 6.13 0.014204 0.043364
GO:0015215 nucleotide transmembrane transporter activity 1.49% (1/67) 6.13 0.014204 0.043364
GO:0005346 purine ribonucleotide transmembrane transporter activity 1.49% (1/67) 6.13 0.014204 0.043364
GO:0000295 adenine nucleotide transmembrane transporter activity 1.49% (1/67) 6.13 0.014204 0.043364
GO:0005347 ATP transmembrane transporter activity 1.49% (1/67) 6.13 0.014204 0.043364
GO:0044237 cellular metabolic process 20.9% (14/67) 0.92 0.013925 0.045624
GO:0042277 peptide binding 1.49% (1/67) 5.98 0.01577 0.047426
GO:0005048 signal sequence binding 1.49% (1/67) 5.98 0.01577 0.047426
GO:0043170 macromolecule metabolic process 20.9% (14/67) 0.89 0.0165 0.049257
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (67) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms