Coexpression cluster: Cluster_205 (Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0006396 RNA processing 9.63% (13/135) 3.2 0.0 1e-06
GO:0016070 RNA metabolic process 11.11% (15/135) 2.29 0.0 9.8e-05
GO:0006397 mRNA processing 5.19% (7/135) 3.83 1e-06 0.000104
GO:0009894 regulation of catabolic process 2.96% (4/135) 6.0 0.0 0.00012
GO:0008150 biological_process 54.07% (73/135) 0.66 2e-06 0.00021
GO:0017111 ribonucleoside triphosphate phosphatase activity 8.15% (11/135) 2.56 3e-06 0.000227
GO:0016071 mRNA metabolic process 5.19% (7/135) 3.53 3e-06 0.000238
GO:0008380 RNA splicing 4.44% (6/135) 3.97 2e-06 0.000254
GO:0016817 hydrolase activity, acting on acid anhydrides 8.15% (11/135) 2.44 7e-06 0.00031
GO:0051649 establishment of localization in cell 5.93% (8/135) 3.06 6e-06 0.000323
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 8.15% (11/135) 2.45 6e-06 0.000324
GO:0046907 intracellular transport 5.93% (8/135) 3.08 5e-06 0.000324
GO:0016462 pyrophosphatase activity 8.15% (11/135) 2.47 5e-06 0.00036
GO:0042176 regulation of protein catabolic process 2.22% (3/135) 6.13 9e-06 0.000411
GO:0036402 proteasome-activating activity 2.22% (3/135) 5.89 1.6e-05 0.000662
GO:0005737 cytoplasm 5.19% (7/135) 3.09 2e-05 0.000758
GO:0009987 cellular process 35.56% (48/135) 0.78 4.9e-05 0.001439
GO:0032968 positive regulation of transcription elongation by RNA polymerase II 1.48% (2/135) 7.42 4.5e-05 0.001463
GO:0034243 regulation of transcription elongation by RNA polymerase II 1.48% (2/135) 7.42 4.5e-05 0.001463
GO:0005575 cellular_component 22.22% (30/135) 1.09 4.8e-05 0.001487
GO:0051641 cellular localization 5.93% (8/135) 2.61 5.4e-05 0.001518
GO:0090304 nucleic acid metabolic process 11.11% (15/135) 1.75 4.3e-05 0.001552
GO:0009057 macromolecule catabolic process 5.19% (7/135) 2.84 6.1e-05 0.001638
GO:0003924 GTPase activity 4.44% (6/135) 3.08 8.4e-05 0.002143
GO:0032786 positive regulation of DNA-templated transcription, elongation 1.48% (2/135) 7.0 9e-05 0.002217
GO:0006357 regulation of transcription by RNA polymerase II 3.7% (5/135) 3.45 9.9e-05 0.002258
GO:0005839 proteasome core complex 2.22% (3/135) 5.06 9.7e-05 0.002297
GO:0006139 nucleobase-containing compound metabolic process 11.85% (16/135) 1.52 0.000152 0.003339
GO:0097159 organic cyclic compound binding 31.85% (43/135) 0.77 0.000179 0.003784
GO:0000398 mRNA splicing, via spliceosome 2.96% (4/135) 3.81 0.000196 0.004015
GO:0000502 proteasome complex 1.48% (2/135) 6.42 0.000225 0.004448
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 2.96% (4/135) 3.66 0.000293 0.005446
GO:0019001 guanyl nucleotide binding 4.44% (6/135) 2.75 0.000285 0.005461
GO:0080135 regulation of cellular response to stress 1.48% (2/135) 6.19 0.000314 0.005663
GO:0006886 intracellular protein transport 3.7% (5/135) 3.08 0.000336 0.0059
GO:0000375 RNA splicing, via transesterification reactions 2.96% (4/135) 3.59 0.000352 0.006003
GO:0032784 regulation of DNA-templated transcription elongation 1.48% (2/135) 6.0 0.000417 0.006245
GO:0070940 obsolete dephosphorylation of RNA polymerase II C-terminal domain 1.48% (2/135) 6.0 0.000417 0.006245
GO:0008420 RNA polymerase II CTD heptapeptide repeat phosphatase activity 1.48% (2/135) 6.0 0.000417 0.006245
GO:0003674 molecular_function 65.93% (89/135) 0.36 0.000393 0.006525
GO:0046483 heterocycle metabolic process 11.85% (16/135) 1.39 0.000407 0.006575
GO:0051603 proteolysis involved in protein catabolic process 3.7% (5/135) 2.98 0.00045 0.006582
GO:0140994 RNA polymerase II CTD heptapeptide repeat modifying activity 1.48% (2/135) 5.83 0.000535 0.007637
GO:0009893 positive regulation of metabolic process 2.96% (4/135) 3.33 0.000702 0.008131
GO:0010604 positive regulation of macromolecule metabolic process 2.96% (4/135) 3.34 0.000676 0.008143
GO:0051173 positive regulation of nitrogen compound metabolic process 2.96% (4/135) 3.34 0.000676 0.008143
GO:0006725 cellular aromatic compound metabolic process 11.85% (16/135) 1.34 0.000588 0.008201
GO:0048522 positive regulation of cellular process 2.96% (4/135) 3.39 0.000604 0.008239
GO:0009056 catabolic process 6.67% (9/135) 1.94 0.00062 0.008278
GO:1901360 organic cyclic compound metabolic process 11.85% (16/135) 1.32 0.000701 0.008283
GO:0016787 hydrolase activity 16.3% (22/135) 1.08 0.000635 0.008301
GO:0035303 regulation of dephosphorylation 1.48% (2/135) 5.68 0.000667 0.008356
GO:0008152 metabolic process 31.85% (43/135) 0.68 0.000659 0.008428
GO:0003723 RNA binding 7.41% (10/135) 1.76 0.000782 0.00889
GO:0019773 proteasome core complex, alpha-subunit complex 1.48% (2/135) 5.54 0.000813 0.009075
GO:0030163 protein catabolic process 2.22% (3/135) 4.0 0.000885 0.009701
GO:0140535 intracellular protein-containing complex 3.7% (5/135) 2.76 0.000903 0.009727
GO:1905369 endopeptidase complex 1.48% (2/135) 5.3 0.001147 0.011936
GO:0031124 mRNA 3'-end processing 1.48% (2/135) 5.3 0.001147 0.011936
GO:0034641 cellular nitrogen compound metabolic process 12.59% (17/135) 1.19 0.001235 0.012642
GO:0140657 ATP-dependent activity 5.93% (8/135) 1.9 0.001478 0.014881
GO:0034660 ncRNA metabolic process 3.7% (5/135) 2.57 0.00163 0.015642
GO:0045944 positive regulation of transcription by RNA polymerase II 2.22% (3/135) 3.7 0.001612 0.015709
GO:0015031 protein transport 3.7% (5/135) 2.57 0.001598 0.015821
GO:0032561 guanyl ribonucleotide binding 3.7% (5/135) 2.53 0.001838 0.017097
GO:0005525 GTP binding 3.7% (5/135) 2.53 0.001838 0.017097
GO:0048518 positive regulation of biological process 2.96% (4/135) 2.93 0.001927 0.017398
GO:0044237 cellular metabolic process 22.96% (31/135) 0.77 0.0019 0.017411
GO:0044238 primary metabolic process 27.41% (37/135) 0.67 0.002089 0.018323
GO:1901575 organic substance catabolic process 5.93% (8/135) 1.82 0.00208 0.018508
GO:0007005 mitochondrion organization 1.48% (2/135) 4.83 0.002221 0.018942
GO:0050789 regulation of biological process 13.33% (18/135) 1.07 0.002213 0.019137
GO:0045184 establishment of protein localization 3.7% (5/135) 2.42 0.00253 0.019917
GO:0006511 ubiquitin-dependent protein catabolic process 2.96% (4/135) 2.83 0.002502 0.01995
GO:0043632 modification-dependent macromolecule catabolic process 2.96% (4/135) 2.83 0.002502 0.01995
GO:0019941 modification-dependent protein catabolic process 2.96% (4/135) 2.83 0.002502 0.01995
GO:0005488 binding 44.44% (60/135) 0.45 0.002618 0.020344
GO:0032991 protein-containing complex 8.89% (12/135) 1.37 0.002456 0.02038
GO:0034470 ncRNA processing 2.96% (4/135) 2.84 0.00244 0.02052
GO:0008104 protein localization 3.7% (5/135) 2.39 0.002814 0.021074
GO:0070727 cellular macromolecule localization 3.7% (5/135) 2.39 0.002814 0.021074
GO:0033036 macromolecule localization 3.7% (5/135) 2.39 0.002814 0.021074
GO:0065007 biological regulation 13.33% (18/135) 1.03 0.00297 0.021712
GO:0101005 deubiquitinase activity 2.22% (3/135) 3.4 0.002964 0.021924
GO:0019783 ubiquitin-like protein peptidase activity 2.22% (3/135) 3.38 0.00308 0.021991
GO:0048583 regulation of response to stimulus 2.22% (3/135) 3.38 0.00308 0.021991
GO:0051254 positive regulation of RNA metabolic process 2.22% (3/135) 3.25 0.003974 0.02465
GO:0045893 positive regulation of DNA-templated transcription 2.22% (3/135) 3.25 0.003974 0.02465
GO:1902680 positive regulation of RNA biosynthetic process 2.22% (3/135) 3.25 0.003974 0.02465
GO:0051246 regulation of protein metabolic process 2.22% (3/135) 3.25 0.003974 0.02465
GO:0003676 nucleic acid binding 14.81% (20/135) 0.93 0.004016 0.024656
GO:0045935 positive regulation of nucleobase-containing compound metabolic process 2.22% (3/135) 3.23 0.004114 0.025008
GO:1903730 regulation of phosphatidate phosphatase activity 0.74% (1/135) 8.0 0.003904 0.025498
GO:0035196 miRNA processing 0.74% (1/135) 8.0 0.003904 0.025498
GO:0004573 Glc3Man9GlcNAc2 oligosaccharide glucosidase activity 0.74% (1/135) 8.0 0.003904 0.025498
GO:0019948 SUMO activating enzyme activity 0.74% (1/135) 8.0 0.003904 0.025498
GO:0042283 dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase activity 0.74% (1/135) 8.0 0.003904 0.025498
GO:0000422 autophagy of mitochondrion 0.74% (1/135) 8.0 0.003904 0.025498
GO:0016925 protein sumoylation 0.74% (1/135) 8.0 0.003904 0.025498
GO:0070918 regulatory ncRNA processing 0.74% (1/135) 8.0 0.003904 0.025498
GO:0031123 RNA 3'-end processing 1.48% (2/135) 4.42 0.003946 0.025504
GO:0016877 ligase activity, forming carbon-sulfur bonds 1.48% (2/135) 4.36 0.004278 0.025753
GO:0009891 positive regulation of biosynthetic process 2.22% (3/135) 3.18 0.004549 0.026602
GO:0010557 positive regulation of macromolecule biosynthetic process 2.22% (3/135) 3.18 0.004549 0.026602
GO:0031328 positive regulation of cellular biosynthetic process 2.22% (3/135) 3.18 0.004549 0.026602
GO:0016874 ligase activity 2.96% (4/135) 2.58 0.004621 0.026765
GO:0006807 nitrogen compound metabolic process 22.96% (31/135) 0.68 0.004723 0.0271
GO:1905368 peptidase complex 1.48% (2/135) 4.25 0.00498 0.028313
GO:0005484 SNAP receptor activity 1.48% (2/135) 4.19 0.00535 0.030134
GO:0080134 regulation of response to stress 1.48% (2/135) 4.14 0.005731 0.03199
GO:0051174 regulation of phosphorus metabolic process 1.48% (2/135) 3.91 0.007819 0.032221
GO:0019220 regulation of phosphate metabolic process 1.48% (2/135) 3.91 0.007819 0.032221
GO:0030674 protein-macromolecule adaptor activity 1.48% (2/135) 3.91 0.007819 0.032221
GO:0031325 positive regulation of cellular metabolic process 2.22% (3/135) 3.05 0.005843 0.032323
GO:0045862 positive regulation of proteolysis 0.74% (1/135) 7.0 0.007792 0.032769
GO:0070037 rRNA (pseudouridine) methyltransferase activity 0.74% (1/135) 7.0 0.007792 0.032769
GO:0042273 ribosomal large subunit biogenesis 0.74% (1/135) 7.0 0.007792 0.032769
GO:0033750 ribosome localization 0.74% (1/135) 7.0 0.007792 0.032769
GO:0000055 ribosomal large subunit export from nucleus 0.74% (1/135) 7.0 0.007792 0.032769
GO:1905898 positive regulation of response to endoplasmic reticulum stress 0.74% (1/135) 7.0 0.007792 0.032769
GO:0000054 ribosomal subunit export from nucleus 0.74% (1/135) 7.0 0.007792 0.032769
GO:0000266 mitochondrial fission 0.74% (1/135) 7.0 0.007792 0.032769
GO:1901800 positive regulation of proteasomal protein catabolic process 0.74% (1/135) 7.0 0.007792 0.032769
GO:0009896 positive regulation of catabolic process 0.74% (1/135) 7.0 0.007792 0.032769
GO:1905897 regulation of response to endoplasmic reticulum stress 0.74% (1/135) 7.0 0.007792 0.032769
GO:1904294 positive regulation of ERAD pathway 0.74% (1/135) 7.0 0.007792 0.032769
GO:1904292 regulation of ERAD pathway 0.74% (1/135) 7.0 0.007792 0.032769
GO:1903052 positive regulation of proteolysis involved in protein catabolic process 0.74% (1/135) 7.0 0.007792 0.032769
GO:0045732 positive regulation of protein catabolic process 0.74% (1/135) 7.0 0.007792 0.032769
GO:0004363 glutathione synthase activity 0.74% (1/135) 7.0 0.007792 0.032769
GO:0036002 pre-mRNA binding 0.74% (1/135) 7.0 0.007792 0.032769
GO:0015926 glucosidase activity 0.74% (1/135) 7.0 0.007792 0.032769
GO:1904091 non-ribosomal peptide synthetase activity 0.74% (1/135) 7.0 0.007792 0.032769
GO:0030628 pre-mRNA 3'-splice site binding 0.74% (1/135) 7.0 0.007792 0.032769
GO:0000386 second spliceosomal transesterification activity 0.74% (1/135) 7.0 0.007792 0.032769
GO:0005785 signal recognition particle receptor complex 0.74% (1/135) 7.0 0.007792 0.032769
GO:1900034 regulation of cellular response to heat 0.74% (1/135) 7.0 0.007792 0.032769
GO:0004455 ketol-acid reductoisomerase activity 0.74% (1/135) 7.0 0.007792 0.032769
GO:0016887 ATP hydrolysis activity 3.7% (5/135) 2.12 0.006065 0.032955
GO:0006099 tricarboxylic acid cycle 1.48% (2/135) 4.09 0.006125 0.032988
GO:0006810 transport 9.63% (13/135) 1.15 0.006057 0.033203
GO:0043170 macromolecule metabolic process 20.74% (28/135) 0.7 0.006231 0.033267
GO:0071704 organic substance metabolic process 27.41% (37/135) 0.55 0.008149 0.033356
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport 1.48% (2/135) 4.05 0.006531 0.034567
GO:0006631 fatty acid metabolic process 2.22% (3/135) 2.84 0.008592 0.034937
GO:0060090 molecular adaptor activity 1.48% (2/135) 3.83 0.008736 0.03529
GO:0050794 regulation of cellular process 11.85% (16/135) 0.99 0.006795 0.03566
GO:0051234 establishment of localization 9.63% (13/135) 1.12 0.006955 0.035883
GO:0022411 cellular component disassembly 1.48% (2/135) 4.0 0.006948 0.036155
GO:0071705 nitrogen compound transport 3.7% (5/135) 1.98 0.009021 0.036202
GO:1901265 nucleoside phosphate binding 16.3% (22/135) 0.76 0.009556 0.037853
GO:0000166 nucleotide binding 16.3% (22/135) 0.76 0.009556 0.037853
GO:0044877 protein-containing complex binding 2.22% (3/135) 2.78 0.009728 0.03829
GO:0019222 regulation of metabolic process 9.63% (13/135) 1.11 0.007519 0.038472
GO:0051179 localization 9.63% (13/135) 1.11 0.007597 0.03855
GO:0071702 organic substance transport 4.44% (6/135) 1.81 0.007703 0.038766
GO:0043487 regulation of RNA stability 0.74% (1/135) 6.42 0.011665 0.041402
GO:0031441 negative regulation of mRNA 3'-end processing 0.74% (1/135) 6.42 0.011665 0.041402
GO:0061013 regulation of mRNA catabolic process 0.74% (1/135) 6.42 0.011665 0.041402
GO:0043488 regulation of mRNA stability 0.74% (1/135) 6.42 0.011665 0.041402
GO:0005047 signal recognition particle binding 0.74% (1/135) 6.42 0.011665 0.041402
GO:0004818 glutamate-tRNA ligase activity 0.74% (1/135) 6.42 0.011665 0.041402
GO:0006424 glutamyl-tRNA aminoacylation 0.74% (1/135) 6.42 0.011665 0.041402
GO:0031503 protein-containing complex localization 0.74% (1/135) 6.42 0.011665 0.041402
GO:0050686 negative regulation of mRNA processing 0.74% (1/135) 6.42 0.011665 0.041402
GO:1903312 negative regulation of mRNA metabolic process 0.74% (1/135) 6.42 0.011665 0.041402
GO:0043175 RNA polymerase core enzyme binding 0.74% (1/135) 6.42 0.011665 0.041402
GO:0031440 regulation of mRNA 3'-end processing 0.74% (1/135) 6.42 0.011665 0.041402
GO:0008143 poly(A) binding 0.74% (1/135) 6.42 0.011665 0.041402
GO:0070717 poly-purine tract binding 0.74% (1/135) 6.42 0.011665 0.041402
GO:1900364 negative regulation of mRNA polyadenylation 0.74% (1/135) 6.42 0.011665 0.041402
GO:0003727 single-stranded RNA binding 0.74% (1/135) 6.42 0.011665 0.041402
GO:0035639 purine ribonucleoside triphosphate binding 13.33% (18/135) 0.83 0.012398 0.043749
GO:1902494 catalytic complex 3.7% (5/135) 1.9 0.01147 0.044856
GO:0004722 protein serine/threonine phosphatase activity 1.48% (2/135) 3.54 0.012854 0.045101
GO:0140098 catalytic activity, acting on RNA 3.7% (5/135) 1.84 0.013431 0.046855
GO:0016579 protein deubiquitination 1.48% (2/135) 3.48 0.013993 0.047997
GO:0022832 voltage-gated channel activity 1.48% (2/135) 3.48 0.013993 0.047997
GO:0005244 voltage-gated monoatomic ion channel activity 1.48% (2/135) 3.48 0.013993 0.047997
GO:1901363 heterocyclic compound binding 16.3% (22/135) 0.71 0.014234 0.048285
GO:0016192 vesicle-mediated transport 2.96% (4/135) 2.11 0.014157 0.048291
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (135) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms