Coexpression cluster: Cluster_60 (Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0009987 cellular process 38.38% (76/198) 0.89 0.0 7e-06
GO:0098796 membrane protein complex 6.06% (12/198) 2.9 0.0 2.3e-05
GO:0008104 protein localization 5.56% (11/198) 2.97 0.0 2.4e-05
GO:0070727 cellular macromolecule localization 5.56% (11/198) 2.97 0.0 2.4e-05
GO:0033036 macromolecule localization 5.56% (11/198) 2.97 0.0 2.4e-05
GO:1902495 transmembrane transporter complex 2.02% (4/198) 5.99 0.0 2.4e-05
GO:1990351 transporter complex 2.02% (4/198) 5.99 0.0 2.4e-05
GO:0098800 inner mitochondrial membrane protein complex 3.03% (6/198) 4.48 0.0 2.6e-05
GO:0051179 localization 13.64% (27/198) 1.61 0.0 2.8e-05
GO:0051641 cellular localization 6.57% (13/198) 2.76 0.0 3e-05
GO:0098798 mitochondrial protein-containing complex 3.03% (6/198) 4.15 1e-06 7.6e-05
GO:0032991 protein-containing complex 11.11% (22/198) 1.69 1e-06 8.9e-05
GO:0006810 transport 12.63% (25/198) 1.54 2e-06 0.000104
GO:0051234 establishment of localization 12.63% (25/198) 1.51 3e-06 0.000131
GO:0045184 establishment of protein localization 4.55% (9/198) 2.72 1.1e-05 0.000522
GO:0008150 biological_process 48.99% (97/198) 0.52 1.3e-05 0.000573
GO:0005575 cellular_component 20.71% (41/198) 0.99 1.4e-05 0.000605
GO:1990204 oxidoreductase complex 2.53% (5/198) 3.96 1.8e-05 0.000718
GO:0015078 proton transmembrane transporter activity 3.03% (6/198) 3.43 2.1e-05 0.000807
GO:0098803 respiratory chain complex 2.02% (4/198) 4.59 2.2e-05 0.000811
GO:0016050 vesicle organization 1.52% (3/198) 5.57 2.9e-05 0.001029
GO:0008324 monoatomic cation transmembrane transporter activity 4.55% (9/198) 2.51 3.3e-05 0.00106
GO:0006997 nucleus organization 1.01% (2/198) 7.45 3.3e-05 0.001087
GO:0015031 protein transport 4.04% (8/198) 2.7 3.6e-05 0.001106
GO:0030964 NADH dehydrogenase complex 1.01% (2/198) 6.86 9.7e-05 0.002646
GO:0005747 mitochondrial respiratory chain complex I 1.01% (2/198) 6.86 9.7e-05 0.002646
GO:0045271 respiratory chain complex I 1.01% (2/198) 6.86 9.7e-05 0.002646
GO:0071705 nitrogen compound transport 4.55% (9/198) 2.28 0.000114 0.002973
GO:0006164 purine nucleotide biosynthetic process 2.53% (5/198) 3.38 0.000125 0.003162
GO:0015075 monoatomic ion transmembrane transporter activity 4.55% (9/198) 2.23 0.000146 0.003564
GO:0090407 organophosphate biosynthetic process 3.54% (7/198) 2.62 0.000158 0.003744
GO:0005093 Rab GDP-dissociation inhibitor activity 1.01% (2/198) 6.45 0.000194 0.004448
GO:0072522 purine-containing compound biosynthetic process 2.53% (5/198) 3.22 0.000212 0.004718
GO:0043227 membrane-bounded organelle 5.56% (11/198) 1.87 0.000249 0.004808
GO:0043231 intracellular membrane-bounded organelle 5.56% (11/198) 1.87 0.000249 0.004808
GO:0022853 active monoatomic ion transmembrane transporter activity 2.53% (5/198) 3.2 0.000223 0.004811
GO:1902600 proton transmembrane transport 2.02% (4/198) 3.72 0.000245 0.00499
GO:0071702 organic substance transport 5.05% (10/198) 1.99 0.000239 0.005011
GO:0016887 ATP hydrolysis activity 4.04% (8/198) 2.25 0.000313 0.00588
GO:0006796 phosphate-containing compound metabolic process 12.12% (24/198) 1.11 0.000343 0.005981
GO:0006996 organelle organization 4.04% (8/198) 2.24 0.000327 0.005999
GO:0006793 phosphorus metabolic process 12.12% (24/198) 1.1 0.000356 0.006062
GO:0015318 inorganic molecular entity transmembrane transporter activity 4.04% (8/198) 2.21 0.000366 0.006096
GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain 1.52% (3/198) 4.45 0.000342 0.00612
GO:0019829 ATPase-coupled monoatomic cation transmembrane transporter activity 2.02% (4/198) 3.47 0.000477 0.007435
GO:0022890 inorganic cation transmembrane transporter activity 3.54% (7/198) 2.35 0.000492 0.007512
GO:0042626 ATPase-coupled transmembrane transporter activity 3.03% (6/198) 2.62 0.000474 0.007561
GO:0016874 ligase activity 3.03% (6/198) 2.62 0.000474 0.007561
GO:0005524 ATP binding 13.64% (27/198) 0.99 0.000514 0.007693
GO:0009165 nucleotide biosynthetic process 2.53% (5/198) 2.92 0.000539 0.007749
GO:1901293 nucleoside phosphate biosynthetic process 2.53% (5/198) 2.92 0.000539 0.007749
GO:0006163 purine nucleotide metabolic process 3.03% (6/198) 2.56 0.000586 0.008262
GO:0045275 respiratory chain complex III 1.01% (2/198) 5.64 0.000672 0.008797
GO:0005750 mitochondrial respiratory chain complex III 1.01% (2/198) 5.64 0.000672 0.008797
GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c 1.01% (2/198) 5.64 0.000672 0.008797
GO:0006812 monoatomic cation transport 3.54% (7/198) 2.28 0.000641 0.008869
GO:0006754 ATP biosynthetic process 1.52% (3/198) 4.08 0.000738 0.009171
GO:0015986 proton motive force-driven ATP synthesis 1.52% (3/198) 4.08 0.000738 0.009171
GO:0043167 ion binding 23.74% (47/198) 0.67 0.000734 0.009434
GO:0022804 active transmembrane transporter activity 4.04% (8/198) 2.05 0.000782 0.009552
GO:0072521 purine-containing compound metabolic process 3.03% (6/198) 2.47 0.000802 0.009633
GO:1902494 catalytic complex 4.04% (8/198) 2.02 0.000876 0.010352
GO:0035639 purine ribonucleoside triphosphate binding 14.14% (28/198) 0.91 0.000904 0.01052
GO:0044237 cellular metabolic process 21.72% (43/198) 0.69 0.000996 0.011406
GO:0034654 nucleobase-containing compound biosynthetic process 4.04% (8/198) 1.95 0.001191 0.013231
GO:0097159 organic cyclic compound binding 27.78% (55/198) 0.57 0.001188 0.013401
GO:0009117 nucleotide metabolic process 3.03% (6/198) 2.32 0.001378 0.014028
GO:0005737 cytoplasm 3.03% (6/198) 2.32 0.001378 0.014028
GO:0009206 purine ribonucleoside triphosphate biosynthetic process 1.52% (3/198) 3.79 0.001345 0.014087
GO:0009145 purine nucleoside triphosphate biosynthetic process 1.52% (3/198) 3.79 0.001345 0.014087
GO:0019438 aromatic compound biosynthetic process 4.55% (9/198) 1.79 0.001297 0.014188
GO:0006811 monoatomic ion transport 3.54% (7/198) 2.08 0.001451 0.014377
GO:0098660 inorganic ion transmembrane transport 2.53% (5/198) 2.6 0.001479 0.014454
GO:0018130 heterocycle biosynthetic process 4.55% (9/198) 1.77 0.00144 0.014463
GO:0015399 primary active transmembrane transporter activity 3.03% (6/198) 2.33 0.001345 0.014497
GO:0006753 nucleoside phosphate metabolic process 3.03% (6/198) 2.29 0.001517 0.014627
GO:0017111 ribonucleoside triphosphate phosphatase activity 4.55% (9/198) 1.72 0.001817 0.016855
GO:0009201 ribonucleoside triphosphate biosynthetic process 1.52% (3/198) 3.64 0.0018 0.016917
GO:0009142 nucleoside triphosphate biosynthetic process 1.52% (3/198) 3.64 0.0018 0.016917
GO:0046034 ATP metabolic process 2.02% (4/198) 2.92 0.001966 0.017792
GO:0019637 organophosphate metabolic process 4.04% (8/198) 1.84 0.001965 0.018002
GO:0005488 binding 42.42% (84/198) 0.38 0.002315 0.020698
GO:1901362 organic cyclic compound biosynthetic process 4.55% (9/198) 1.66 0.002393 0.020886
GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) 1.01% (2/198) 4.75 0.00244 0.021044
GO:0031090 organelle membrane 2.02% (4/198) 2.85 0.002385 0.021059
GO:0032559 adenyl ribonucleotide binding 14.14% (28/198) 0.81 0.002478 0.021122
GO:0009144 purine nucleoside triphosphate metabolic process 2.02% (4/198) 2.82 0.002568 0.02115
GO:0009205 purine ribonucleoside triphosphate metabolic process 2.02% (4/198) 2.82 0.002568 0.02115
GO:0016192 vesicle-mediated transport 3.03% (6/198) 2.14 0.00253 0.021315
GO:0016462 pyrophosphatase activity 4.55% (9/198) 1.63 0.002732 0.022251
GO:0005092 GDP-dissociation inhibitor activity 1.01% (2/198) 4.64 0.002836 0.022846
GO:0009199 ribonucleoside triphosphate metabolic process 2.02% (4/198) 2.76 0.002963 0.023609
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 4.55% (9/198) 1.6 0.003107 0.024492
GO:0016817 hydrolase activity, acting on acid anhydrides 4.55% (9/198) 1.6 0.003187 0.024853
GO:0019646 aerobic electron transport chain 1.01% (2/198) 4.54 0.00326 0.025156
GO:0043226 organelle 6.57% (13/198) 1.25 0.003556 0.0266
GO:0043229 intracellular organelle 6.57% (13/198) 1.25 0.003556 0.0266
GO:0009141 nucleoside triphosphate metabolic process 2.02% (4/198) 2.69 0.003513 0.026825
GO:0035556 intracellular signal transduction 2.53% (5/198) 2.29 0.003792 0.02752
GO:0055086 nucleobase-containing small molecule metabolic process 3.03% (6/198) 2.03 0.003765 0.027601
GO:0032555 purine ribonucleotide binding 14.65% (29/198) 0.76 0.003742 0.027709
GO:0005261 monoatomic cation channel activity 1.52% (3/198) 3.25 0.003896 0.027998
GO:0046483 heterocycle metabolic process 9.09% (18/198) 1.01 0.00396 0.028182
GO:0015252 proton channel activity 1.01% (2/198) 4.36 0.004191 0.029259
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism 1.01% (2/198) 4.36 0.004191 0.029259
GO:0098655 monoatomic cation transmembrane transport 2.02% (4/198) 2.49 0.005731 0.029377
GO:0048280 vesicle fusion with Golgi apparatus 0.51% (1/198) 7.45 0.005725 0.029553
GO:0061780 mitotic cohesin loading 0.51% (1/198) 7.45 0.005725 0.029553
GO:0031056 regulation of histone modification 0.51% (1/198) 7.45 0.005725 0.029553
GO:0071168 protein localization to chromatin 0.51% (1/198) 7.45 0.005725 0.029553
GO:0071921 cohesin loading 0.51% (1/198) 7.45 0.005725 0.029553
GO:0000038 very long-chain fatty acid metabolic process 0.51% (1/198) 7.45 0.005725 0.029553
GO:2000756 regulation of peptidyl-lysine acetylation 0.51% (1/198) 7.45 0.005725 0.029553
GO:0009443 pyridoxal 5'-phosphate salvage 0.51% (1/198) 7.45 0.005725 0.029553
GO:0042761 very long-chain fatty acid biosynthetic process 0.51% (1/198) 7.45 0.005725 0.029553
GO:0061025 membrane fusion 0.51% (1/198) 7.45 0.005725 0.029553
GO:0006906 vesicle fusion 0.51% (1/198) 7.45 0.005725 0.029553
GO:0008478 pyridoxal kinase activity 0.51% (1/198) 7.45 0.005725 0.029553
GO:0090174 organelle membrane fusion 0.51% (1/198) 7.45 0.005725 0.029553
GO:0034502 protein localization to chromosome 0.51% (1/198) 7.45 0.005725 0.029553
GO:0004639 phosphoribosylaminoimidazolesuccinocarboxamide synthase activity 0.51% (1/198) 7.45 0.005725 0.029553
GO:0048284 organelle fusion 0.51% (1/198) 7.45 0.005725 0.029553
GO:0030904 retromer complex 0.51% (1/198) 7.45 0.005725 0.029553
GO:0035065 regulation of histone acetylation 0.51% (1/198) 7.45 0.005725 0.029553
GO:0005773 vacuole 0.51% (1/198) 7.45 0.005725 0.029553
GO:0003952 NAD+ synthase (glutamine-hydrolyzing) activity 0.51% (1/198) 7.45 0.005725 0.029553
GO:0005764 lysosome 0.51% (1/198) 7.45 0.005725 0.029553
GO:0000323 lytic vacuole 0.51% (1/198) 7.45 0.005725 0.029553
GO:1901983 regulation of protein acetylation 0.51% (1/198) 7.45 0.005725 0.029553
GO:0003723 RNA binding 5.56% (11/198) 1.35 0.004338 0.029999
GO:0032553 ribonucleotide binding 14.65% (29/198) 0.74 0.004466 0.030592
GO:0003712 transcription coregulator activity 1.52% (3/198) 3.18 0.004525 0.030712
GO:0016773 phosphotransferase activity, alcohol group as acceptor 9.09% (18/198) 0.95 0.006061 0.030853
GO:0009060 aerobic respiration 1.01% (2/198) 4.28 0.004698 0.031021
GO:0007264 small GTPase mediated signal transduction 1.01% (2/198) 4.28 0.004698 0.031021
GO:0022900 electron transport chain 1.52% (3/198) 3.15 0.004748 0.031072
GO:0140657 ATP-dependent activity 4.55% (9/198) 1.52 0.004643 0.031221
GO:0030554 adenyl nucleotide binding 14.14% (28/198) 0.74 0.004925 0.031944
GO:0097367 carbohydrate derivative binding 14.65% (29/198) 0.73 0.005003 0.032171
GO:0003951 NAD+ kinase activity 1.01% (2/198) 4.06 0.006375 0.032229
GO:0043168 anion binding 15.66% (31/198) 0.69 0.005073 0.032337
GO:0072525 pyridine-containing compound biosynthetic process 1.01% (2/198) 4.2 0.00523 0.032491
GO:0042579 microbody 1.01% (2/198) 4.2 0.00523 0.032491
GO:0045333 cellular respiration 1.01% (2/198) 4.2 0.00523 0.032491
GO:0009152 purine ribonucleotide biosynthetic process 1.52% (3/198) 2.99 0.006491 0.032586
GO:1901360 organic cyclic compound metabolic process 9.09% (18/198) 0.94 0.006599 0.032682
GO:0016043 cellular component organization 5.05% (10/198) 1.34 0.006581 0.032818
GO:0003714 transcription corepressor activity 1.01% (2/198) 3.99 0.006987 0.034141
GO:0034220 monoatomic ion transmembrane transport 2.02% (4/198) 2.42 0.006941 0.034144
GO:0006725 cellular aromatic compound metabolic process 9.09% (18/198) 0.96 0.005594 0.03446
GO:0017076 purine nucleotide binding 14.65% (29/198) 0.69 0.007227 0.035083
GO:0098662 inorganic cation transmembrane transport 2.02% (4/198) 2.39 0.007315 0.035275
GO:1901363 heterocyclic compound binding 15.66% (31/198) 0.65 0.007603 0.036426
GO:0005634 nucleus 3.54% (7/198) 1.64 0.007774 0.037003
GO:0042625 ATPase-coupled ion transmembrane transporter activity 1.01% (2/198) 3.86 0.008285 0.037488
GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism 1.01% (2/198) 3.86 0.008285 0.037488
GO:0046961 proton-transporting ATPase activity, rotational mechanism 1.01% (2/198) 3.86 0.008285 0.037488
GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain 1.01% (2/198) 3.86 0.008285 0.037488
GO:0016301 kinase activity 9.09% (18/198) 0.9 0.008547 0.038201
GO:0036094 small molecule binding 15.66% (31/198) 0.64 0.008505 0.038244
GO:0009260 ribonucleotide biosynthetic process 1.52% (3/198) 2.86 0.008251 0.038277
GO:0046390 ribose phosphate biosynthetic process 1.52% (3/198) 2.86 0.008251 0.038277
GO:0000166 nucleotide binding 15.15% (30/198) 0.66 0.008199 0.038526
GO:1901265 nucleoside phosphate binding 15.15% (30/198) 0.66 0.008199 0.038526
GO:0022904 respiratory electron transport chain 1.01% (2/198) 3.8 0.008972 0.039858
GO:0009150 purine ribonucleotide metabolic process 2.02% (4/198) 2.3 0.009163 0.040462
GO:0070069 cytochrome complex 1.01% (2/198) 3.75 0.009683 0.042249
GO:0044281 small molecule metabolic process 5.56% (11/198) 1.19 0.009657 0.042388
GO:0009259 ribonucleotide metabolic process 2.02% (4/198) 2.24 0.010551 0.04576
GO:0003676 nucleic acid binding 12.63% (25/198) 0.7 0.011461 0.045905
GO:0048208 COPII vesicle coating 0.51% (1/198) 6.45 0.011418 0.045985
GO:0016303 1-phosphatidylinositol-3-kinase activity 0.51% (1/198) 6.45 0.011418 0.045985
GO:0016418 S-acetyltransferase activity 0.51% (1/198) 6.45 0.011418 0.045985
GO:0080008 Cul4-RING E3 ubiquitin ligase complex 0.51% (1/198) 6.45 0.011418 0.045985
GO:0015386 potassium:proton antiporter activity 0.51% (1/198) 6.45 0.011418 0.045985
GO:0006901 vesicle coating 0.51% (1/198) 6.45 0.011418 0.045985
GO:0004359 glutaminase activity 0.51% (1/198) 6.45 0.011418 0.045985
GO:0036258 multivesicular body assembly 0.51% (1/198) 6.45 0.011418 0.045985
GO:0036257 multivesicular body organization 0.51% (1/198) 6.45 0.011418 0.045985
GO:0004742 dihydrolipoyllysine-residue acetyltransferase activity 0.51% (1/198) 6.45 0.011418 0.045985
GO:0022821 solute:potassium antiporter activity 0.51% (1/198) 6.45 0.011418 0.045985
GO:0008541 proteasome regulatory particle, lid subcomplex 0.51% (1/198) 6.45 0.011418 0.045985
GO:0019693 ribose phosphate metabolic process 2.02% (4/198) 2.2 0.011547 0.045999
GO:0016071 mRNA metabolic process 2.02% (4/198) 2.17 0.012332 0.048863
GO:0051246 regulation of protein metabolic process 1.52% (3/198) 2.69 0.01137 0.049025
GO:0016772 transferase activity, transferring phosphorus-containing groups 9.6% (19/198) 0.81 0.012452 0.049072
GO:0015980 energy derivation by oxidation of organic compounds 1.01% (2/198) 3.54 0.012768 0.049783
GO:0015299 obsolete solute:proton antiporter activity 1.01% (2/198) 3.54 0.012768 0.049783
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (198) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms