Coexpression cluster: Cluster_165 (Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0140640 catalytic activity, acting on a nucleic acid 11.39% (9/79) 2.67 1.2e-05 0.000884
GO:0006139 nucleobase-containing compound metabolic process 16.46% (13/79) 1.99 2e-05 0.000941
GO:0006725 cellular aromatic compound metabolic process 17.72% (14/79) 1.92 1.6e-05 0.000991
GO:0046483 heterocycle metabolic process 17.72% (14/79) 1.97 1.1e-05 0.001017
GO:1901360 organic cyclic compound metabolic process 17.72% (14/79) 1.9 1.9e-05 0.001021
GO:0017119 Golgi transport complex 2.53% (2/79) 7.77 3.1e-05 0.00126
GO:0051168 nuclear export 3.8% (3/79) 6.11 1.1e-05 0.001328
GO:0006611 protein export from nucleus 2.53% (2/79) 7.45 5.1e-05 0.001716
GO:0009987 cellular process 40.51% (32/79) 0.96 5.1e-05 0.001867
GO:0090304 nucleic acid metabolic process 15.19% (12/79) 2.2 1.1e-05 0.00198
GO:0006807 nitrogen compound metabolic process 31.65% (25/79) 1.14 7e-05 0.002155
GO:0005049 nuclear export signal receptor activity 2.53% (2/79) 6.97 0.000107 0.002823
GO:0003676 nucleic acid binding 21.52% (17/79) 1.47 0.000102 0.002883
GO:0051641 cellular localization 7.59% (6/79) 2.97 0.000121 0.002973
GO:0043170 macromolecule metabolic process 31.65% (25/79) 1.31 1e-05 0.003616
GO:0140097 catalytic activity, acting on DNA 6.33% (5/79) 3.3 0.000163 0.003748
GO:0008150 biological_process 54.43% (43/79) 0.67 0.000179 0.003867
GO:0006913 nucleocytoplasmic transport 3.8% (3/79) 4.6 0.000262 0.005349
GO:0140142 nucleocytoplasmic carrier activity 2.53% (2/79) 6.19 0.000335 0.005604
GO:0051169 nuclear transport 3.8% (3/79) 4.55 0.000291 0.005645
GO:0032991 protein-containing complex 12.66% (10/79) 1.88 0.00037 0.00567
GO:0003723 RNA binding 10.13% (8/79) 2.22 0.000328 0.005756
GO:0034641 cellular nitrogen compound metabolic process 16.46% (13/79) 1.58 0.000361 0.005774
GO:0071704 organic substance metabolic process 35.44% (28/79) 0.92 0.000316 0.005807
GO:0016070 RNA metabolic process 10.13% (8/79) 2.16 0.000433 0.006369
GO:0044238 primary metabolic process 32.91% (26/79) 0.93 0.000522 0.007392
GO:0005488 binding 50.63% (40/79) 0.64 0.000666 0.009081
GO:0034061 DNA polymerase activity 2.53% (2/79) 5.45 0.000953 0.011314
GO:0003887 DNA-directed DNA polymerase activity 2.53% (2/79) 5.45 0.000953 0.011314
GO:0071705 nitrogen compound transport 6.33% (5/79) 2.76 0.000895 0.011356
GO:0008152 metabolic process 35.44% (28/79) 0.83 0.000894 0.011754
GO:0005643 nuclear pore 2.53% (2/79) 5.25 0.001264 0.01453
GO:0015031 protein transport 5.06% (4/79) 3.03 0.001516 0.016905
GO:0140104 molecular carrier activity 2.53% (2/79) 5.07 0.001616 0.01749
GO:0003697 single-stranded DNA binding 2.53% (2/79) 5.02 0.001743 0.018322
GO:0033036 macromolecule localization 5.06% (4/79) 2.84 0.002436 0.020376
GO:0070727 cellular macromolecule localization 5.06% (4/79) 2.84 0.002436 0.020376
GO:0051649 establishment of localization in cell 5.06% (4/79) 2.84 0.002436 0.020376
GO:0008104 protein localization 5.06% (4/79) 2.84 0.002436 0.020376
GO:0046907 intracellular transport 5.06% (4/79) 2.86 0.00233 0.021439
GO:0035639 purine ribonucleoside triphosphate binding 17.72% (14/79) 1.24 0.002101 0.02148
GO:0006480 N-terminal protein amino acid methylation 1.27% (1/79) 8.77 0.002284 0.021554
GO:0010387 COP9 signalosome assembly 1.27% (1/79) 8.77 0.002284 0.021554
GO:0045184 establishment of protein localization 5.06% (4/79) 2.87 0.002228 0.022156
GO:0006457 protein folding 3.8% (3/79) 3.4 0.002917 0.023854
GO:0003674 molecular_function 67.09% (53/79) 0.39 0.003172 0.025378
GO:0071702 organic substance transport 6.33% (5/79) 2.32 0.003364 0.025787
GO:0140513 nuclear protein-containing complex 5.06% (4/79) 2.71 0.003316 0.025964
GO:0006479 protein methylation 2.53% (2/79) 4.45 0.003799 0.027959
GO:0008213 protein alkylation 2.53% (2/79) 4.45 0.003799 0.027959
GO:0004150 dihydroneopterin aldolase activity 1.27% (1/79) 7.77 0.004563 0.028954
GO:0031087 deadenylation-independent decapping of nuclear-transcribed mRNA 1.27% (1/79) 7.77 0.004563 0.028954
GO:0000338 protein deneddylation 1.27% (1/79) 7.77 0.004563 0.028954
GO:0034518 RNA cap binding complex 1.27% (1/79) 7.77 0.004563 0.028954
GO:0000339 RNA cap binding 1.27% (1/79) 7.77 0.004563 0.028954
GO:0004385 guanylate kinase activity 1.27% (1/79) 7.77 0.004563 0.028954
GO:0005846 nuclear cap binding complex 1.27% (1/79) 7.77 0.004563 0.028954
GO:0097159 organic cyclic compound binding 31.65% (25/79) 0.76 0.004092 0.029527
GO:0004222 metalloendopeptidase activity 2.53% (2/79) 4.19 0.005429 0.033863
GO:0003724 RNA helicase activity 2.53% (2/79) 4.1 0.00611 0.036858
GO:0008186 ATP-dependent activity, acting on RNA 2.53% (2/79) 4.1 0.00611 0.036858
GO:0005575 cellular_component 20.25% (16/79) 0.96 0.006858 0.037116
GO:0006891 intra-Golgi vesicle-mediated transport 1.27% (1/79) 7.19 0.006837 0.037555
GO:0008180 COP9 signalosome 1.27% (1/79) 7.19 0.006837 0.037555
GO:0042753 positive regulation of circadian rhythm 1.27% (1/79) 7.19 0.006837 0.037555
GO:0003909 DNA ligase activity 1.27% (1/79) 7.19 0.006837 0.037555
GO:0003910 DNA ligase (ATP) activity 1.27% (1/79) 7.19 0.006837 0.037555
GO:0032555 purine ribonucleotide binding 17.72% (14/79) 1.03 0.007623 0.038426
GO:0006810 transport 11.39% (9/79) 1.39 0.007233 0.038576
GO:0000166 nucleotide binding 18.99% (15/79) 0.98 0.007615 0.038922
GO:1901265 nucleoside phosphate binding 18.99% (15/79) 0.98 0.007615 0.038922
GO:0005524 ATP binding 15.19% (12/79) 1.14 0.007488 0.039365
GO:0019899 enzyme binding 2.53% (2/79) 3.89 0.008103 0.039757
GO:0016886 ligase activity, forming phosphoric ester bonds 1.27% (1/79) 6.77 0.009106 0.039894
GO:0070063 RNA polymerase binding 1.27% (1/79) 6.77 0.009106 0.039894
GO:0004825 methionine-tRNA ligase activity 1.27% (1/79) 6.77 0.009106 0.039894
GO:0006431 methionyl-tRNA aminoacylation 1.27% (1/79) 6.77 0.009106 0.039894
GO:0140098 catalytic activity, acting on RNA 5.06% (4/79) 2.29 0.009228 0.039952
GO:0051234 establishment of localization 11.39% (9/79) 1.37 0.008052 0.040041
GO:0140535 intracellular protein-containing complex 3.8% (3/79) 2.8 0.009371 0.040099
GO:0005515 protein binding 22.78% (18/79) 0.89 0.006781 0.040251
GO:0051179 localization 11.39% (9/79) 1.35 0.008624 0.040689
GO:0140657 ATP-dependent activity 6.33% (5/79) 1.99 0.008582 0.041018
GO:0032553 ribonucleotide binding 17.72% (14/79) 1.01 0.008481 0.041067
GO:0051082 unfolded protein binding 2.53% (2/79) 3.82 0.008916 0.041531
GO:0097367 carbohydrate derivative binding 17.72% (14/79) 1.0 0.009087 0.041801
GO:0017076 purine nucleotide binding 17.72% (14/79) 0.96 0.01138 0.042735
GO:0006259 DNA metabolic process 5.06% (4/79) 2.25 0.010134 0.042865
GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity 1.27% (1/79) 6.45 0.01137 0.043136
GO:0015924 mannosyl-oligosaccharide mannosidase activity 1.27% (1/79) 6.45 0.01137 0.043136
GO:0031365 N-terminal protein amino acid modification 1.27% (1/79) 6.45 0.01137 0.043136
GO:0140318 protein transporter activity 1.27% (1/79) 6.45 0.01137 0.043136
GO:2000028 regulation of photoperiodism, flowering 1.27% (1/79) 6.45 0.01137 0.043136
GO:0022884 macromolecule transmembrane transporter activity 1.27% (1/79) 6.45 0.01137 0.043136
GO:0008320 protein transmembrane transporter activity 1.27% (1/79) 6.45 0.01137 0.043136
GO:0099023 vesicle tethering complex 2.53% (2/79) 3.71 0.010348 0.043274
GO:1901363 heterocyclic compound binding 18.99% (15/79) 0.93 0.010524 0.043516
GO:0036094 small molecule binding 18.99% (15/79) 0.92 0.01129 0.046165
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (79) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms