Coexpression cluster: Cluster_24 (Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0046073 dTMP metabolic process 1.3% (2/154) 7.81 2e-05 0.001022
GO:0042083 5,10-methylenetetrahydrofolate-dependent methyltransferase activity 1.3% (2/154) 7.81 2e-05 0.001022
GO:0006231 dTMP biosynthetic process 1.3% (2/154) 7.81 2e-05 0.001022
GO:0004146 dihydrofolate reductase activity 1.3% (2/154) 7.81 2e-05 0.001022
GO:0004799 thymidylate synthase activity 1.3% (2/154) 7.81 2e-05 0.001022
GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor 1.95% (3/154) 6.59 3e-06 0.001397
GO:0006098 pentose-phosphate shunt 1.95% (3/154) 5.94 1.4e-05 0.001625
GO:0051156 glucose 6-phosphate metabolic process 1.95% (3/154) 5.94 1.4e-05 0.001625
GO:0006740 NADPH regeneration 1.95% (3/154) 5.94 1.4e-05 0.001625
GO:0009162 deoxyribonucleoside monophosphate metabolic process 1.3% (2/154) 7.23 5.9e-05 0.00172
GO:0009157 deoxyribonucleoside monophosphate biosynthetic process 1.3% (2/154) 7.23 5.9e-05 0.00172
GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity 1.3% (2/154) 7.23 5.9e-05 0.00172
GO:0009177 pyrimidine deoxyribonucleoside monophosphate biosynthetic process 1.3% (2/154) 7.23 5.9e-05 0.00172
GO:0009176 pyrimidine deoxyribonucleoside monophosphate metabolic process 1.3% (2/154) 7.23 5.9e-05 0.00172
GO:0046654 tetrahydrofolate biosynthetic process 1.3% (2/154) 7.23 5.9e-05 0.00172
GO:0006739 NADP metabolic process 1.95% (3/154) 5.49 3.8e-05 0.001769
GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors 1.95% (3/154) 5.23 6.7e-05 0.001848
GO:0032182 ubiquitin-like protein binding 1.95% (3/154) 5.0 0.000109 0.002669
GO:0043130 ubiquitin binding 1.95% (3/154) 5.0 0.000109 0.002669
GO:0016197 endosomal transport 1.95% (3/154) 4.94 0.000125 0.002926
GO:0009219 pyrimidine deoxyribonucleotide metabolic process 1.3% (2/154) 6.49 0.000195 0.003257
GO:0009265 2'-deoxyribonucleotide biosynthetic process 1.3% (2/154) 6.49 0.000195 0.003257
GO:0009394 2'-deoxyribonucleotide metabolic process 1.3% (2/154) 6.49 0.000195 0.003257
GO:0009130 pyrimidine nucleoside monophosphate biosynthetic process 1.3% (2/154) 6.49 0.000195 0.003257
GO:0046385 deoxyribose phosphate biosynthetic process 1.3% (2/154) 6.49 0.000195 0.003257
GO:0019692 deoxyribose phosphate metabolic process 1.3% (2/154) 6.49 0.000195 0.003257
GO:0009221 pyrimidine deoxyribonucleotide biosynthetic process 1.3% (2/154) 6.49 0.000195 0.003257
GO:0009129 pyrimidine nucleoside monophosphate metabolic process 1.3% (2/154) 6.49 0.000195 0.003257
GO:0007034 vacuolar transport 1.95% (3/154) 4.64 0.000234 0.00377
GO:0009263 deoxyribonucleotide biosynthetic process 1.3% (2/154) 6.0 0.000408 0.006142
GO:0006730 one-carbon metabolic process 1.3% (2/154) 6.0 0.000408 0.006142
GO:0009262 deoxyribonucleotide metabolic process 1.3% (2/154) 5.81 0.000542 0.00767
GO:0046653 tetrahydrofolate metabolic process 1.3% (2/154) 5.81 0.000542 0.00767
GO:0005783 endoplasmic reticulum 1.95% (3/154) 4.19 0.000602 0.008269
GO:0008219 cell death 1.3% (2/154) 5.49 0.000866 0.009864
GO:0043328 protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway 1.3% (2/154) 5.49 0.000866 0.009864
GO:0012501 programmed cell death 1.3% (2/154) 5.49 0.000866 0.009864
GO:2000031 regulation of salicylic acid mediated signaling pathway 1.3% (2/154) 5.49 0.000866 0.009864
GO:0051641 cellular localization 4.55% (7/154) 2.23 0.000792 0.010273
GO:0046907 intracellular transport 3.9% (6/154) 2.48 0.000782 0.010441
GO:0051649 establishment of localization in cell 3.9% (6/154) 2.46 0.000834 0.010527
GO:0055086 nucleobase-containing small molecule metabolic process 3.9% (6/154) 2.39 0.001067 0.011325
GO:0009396 folic acid-containing compound biosynthetic process 1.3% (2/154) 5.35 0.001055 0.011461
GO:0032511 late endosome to vacuole transport via multivesicular body sorting pathway 1.3% (2/154) 5.35 0.001055 0.011461
GO:0045324 late endosome to vacuole transport 1.3% (2/154) 5.23 0.001263 0.013104
GO:0032509 endosome transport via multivesicular body sorting pathway 1.3% (2/154) 5.11 0.001488 0.015105
GO:1901135 carbohydrate derivative metabolic process 3.9% (6/154) 2.27 0.00165 0.016395
GO:0072666 establishment of protein localization to vacuole 1.3% (2/154) 5.0 0.001731 0.016496
GO:0072665 protein localization to vacuole 1.3% (2/154) 5.0 0.001731 0.016496
GO:0042559 pteridine-containing compound biosynthetic process 1.3% (2/154) 4.9 0.001991 0.018599
GO:0005543 phospholipid binding 1.95% (3/154) 3.47 0.002579 0.023164
GO:0009117 nucleotide metabolic process 3.25% (5/154) 2.42 0.002561 0.023453
GO:0042398 cellular modified amino acid biosynthetic process 1.3% (2/154) 4.64 0.002876 0.023986
GO:0006760 folic acid-containing compound metabolic process 1.3% (2/154) 4.64 0.002876 0.023986
GO:0006753 nucleoside phosphate metabolic process 3.25% (5/154) 2.39 0.002778 0.024475
GO:0015031 protein transport 3.25% (5/154) 2.38 0.002834 0.024507
GO:0071985 multivesicular body sorting pathway 1.3% (2/154) 4.56 0.003205 0.025371
GO:0009124 nucleoside monophosphate biosynthetic process 1.3% (2/154) 4.56 0.003205 0.025371
GO:0009123 nucleoside monophosphate metabolic process 1.3% (2/154) 4.56 0.003205 0.025371
GO:0071705 nitrogen compound transport 3.9% (6/154) 2.06 0.003405 0.026499
GO:1990112 RQC complex 0.65% (1/154) 7.81 0.004453 0.030581
GO:0004489 methylenetetrahydrofolate reductase (NAD(P)H) activity 0.65% (1/154) 7.81 0.004453 0.030581
GO:0005663 DNA replication factor C complex 0.65% (1/154) 7.81 0.004453 0.030581
GO:0003689 DNA clamp loader activity 0.65% (1/154) 7.81 0.004453 0.030581
GO:1990116 ribosome-associated ubiquitin-dependent protein catabolic process 0.65% (1/154) 7.81 0.004453 0.030581
GO:0070727 cellular macromolecule localization 3.25% (5/154) 2.2 0.004927 0.031956
GO:0008104 protein localization 3.25% (5/154) 2.2 0.004927 0.031956
GO:0033036 macromolecule localization 3.25% (5/154) 2.2 0.004927 0.031956
GO:0042558 pteridine-containing compound metabolic process 1.3% (2/154) 4.35 0.004292 0.03233
GO:0016192 vesicle-mediated transport 3.25% (5/154) 2.24 0.004287 0.032817
GO:0006886 intracellular protein transport 2.6% (4/154) 2.56 0.004855 0.032856
GO:0045184 establishment of protein localization 3.25% (5/154) 2.23 0.004441 0.032918
GO:0006575 cellular modified amino acid metabolic process 1.3% (2/154) 4.11 0.005969 0.038185
GO:0046496 nicotinamide nucleotide metabolic process 1.95% (3/154) 3.02 0.006132 0.0387
GO:0019362 pyridine nucleotide metabolic process 1.95% (3/154) 2.99 0.00655 0.040783
GO:0008289 lipid binding 2.6% (4/154) 2.4 0.007175 0.044086
GO:0006220 pyrimidine nucleotide metabolic process 1.3% (2/154) 3.95 0.007392 0.044256
GO:0006221 pyrimidine nucleotide biosynthetic process 1.3% (2/154) 3.95 0.007392 0.044256
GO:0072524 pyridine-containing compound metabolic process 1.95% (3/154) 2.89 0.007902 0.04671
GO:0031332 RNAi effector complex 0.65% (1/154) 6.81 0.008886 0.047157
GO:0043023 ribosomal large subunit binding 0.65% (1/154) 6.81 0.008886 0.047157
GO:0008608 attachment of spindle microtubules to kinetochore 0.65% (1/154) 6.81 0.008886 0.047157
GO:0016442 RISC complex 0.65% (1/154) 6.81 0.008886 0.047157
GO:0051315 attachment of mitotic spindle microtubules to kinetochore 0.65% (1/154) 6.81 0.008886 0.047157
GO:0034553 mitochondrial respiratory chain complex II assembly 0.65% (1/154) 6.81 0.008886 0.047157
GO:0034552 respiratory chain complex II assembly 0.65% (1/154) 6.81 0.008886 0.047157
GO:0004801 transaldolase activity 0.65% (1/154) 6.81 0.008886 0.047157
GO:0019637 organophosphate metabolic process 3.9% (6/154) 1.78 0.008332 0.048639
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (154) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms